Regulon of AlgR in Shewanella frigidimarina NCIMB 400

Properties
Regulator type:	Transcription factor
TF locus tag:	Sfri_3102
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Alginate utilization
Effector:	Glucuronate; Galacturonate
Regulog:	AlgR - Shewanellaceae
Statistics of regulated genes:
- Genes	6
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - GntR/Others
By effector - Glucuronate
By effector - Galacturonate
By pathway - Alginate utilization

Regulated operons
	Locus Tag	Name	Function
Position: -673 Score: 5.6 Sequence: TAATTGGTAAAACAATTT Locus tag: Sfri_3103 Name: algL1 Funciton: Alginate lyase precursor (EC 4.2.2.3) Locus tag: Sfri_3104 Name: algL2 Funciton: poly(beta-D-mannuronate) lyase (EC 4.2.2.3) Locus tag: Sfri_3105 Name: kdgF Funciton: Pectin degradation protein KdgF Locus tag: Sfri_3106 Name: algT Funciton: Predicted mannuronate transporter Locus tag: Sfri_3107 Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
	Sfri_3103	algL1	Alginate lyase precursor (EC 4.2.2.3)
	Sfri_3104	algL2	poly(beta-D-mannuronate) lyase (EC 4.2.2.3)
	Sfri_3105	kdgF	Pectin degradation protein KdgF
	Sfri_3106	algT	Predicted mannuronate transporter
	Sfri_3107	kdgK	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Position: -192 Score: 5.6 Sequence: AAATTGTTTTACCAATTA Locus tag: Sfri_3102 Name: algR Funciton: Alginate utilization operon transcriptional repressor, AlgR
	Sfri_3102	algR	Alginate utilization operon transcriptional repressor, AlgR

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD