Regulog AlgR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Alginate utilization |
| Effector: | Glucuronate; Galacturonate |
| Phylum: | Proteobacteria/gamma |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - GntR/Others
- By effector - Glucuronate
- By effector - Galacturonate
- By pathway - Alginate utilization
| Genome | Genes | Operons |
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| Shewanella oneidensis MR-1 | ||
| Shewanella putrefaciens CN-32 | ||
| Shewanella sp W3-18-1 | ||
| Shewanella sp ANA-3 | ||
| Shewanella sp MR-4 | ||
| Shewanella sp MR-7 | ||
| Shewanella baltica OS155 | ||
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | 6 | 2 |
| Shewanella amazonensis SB2B | ||
| Shewanella loihica PV-4 | ||
| Shewanella pealeana ATCC 700345 | ||
| Shewanella halifaxensis HAW-EB4 | ||
| Shewanella piezotolerans WP3 | ||
| Shewanella sediminis HAW-EB3 | ||
| Shewanella woodyi ATCC 51908 |
| Genes | Function | ||||||||||||||||
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| CRON 1. | |||||||||||||||||
| algL1 |
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Shewanella frigidimarina NCIMB 400 Site: position = -673 score = 5.58445 sequence = TAATTGGTAAAACAATTT Gene: Sfri_3103: Alginate lyase precursor (EC 4.2.2.3) |
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Alginate lyase precursor (EC 4.2.2.3) |
| algL2 |
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Gene: Sfri_3104: poly(beta-D-mannuronate) lyase (EC 4.2.2.3) |
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poly(beta-D-mannuronate) lyase (EC 4.2.2.3) |
| kdgF |
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Gene: Sfri_3105: Pectin degradation protein KdgF |
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Pectin degradation protein KdgF |
| algT |
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Gene: Sfri_3106: Predicted mannuronate transporter |
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Predicted mannuronate transporter |
| kdgK |
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Gene: Sfri_3107: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
| CRON 2. | |||||||||||||||||
| algR |
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Shewanella frigidimarina NCIMB 400 Site: position = -192 score = 5.58445 sequence = AAATTGTTTTACCAATTA Gene: Sfri_3102: Alginate utilization operon transcriptional repressor, AlgR |
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Alginate utilization operon transcriptional repressor, AlgR |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |