Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Paenibacillus sp. JDR-2

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ABC3918 1 1
TF AdaA DNA alkylation response 3 2
TF AraR Arabinose Arabinose utilization 6 3
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 5 2
TF BC2903 Multidrug resistance; Multidrug efflux 1 1
TF BH0651 Multidrug resistance; Multidrug efflux 1 1
TF BirA Biotin Biotin biosynthesis 2 2
TF CcpA HPr, phosphocarrier protein Carbon catabolism 67 11
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 64 7
TF CsoR Copper ion, (Cu+) Copper resistance 3 4
TF CtsR Heat shock Heat shock response 4 2
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 13 10
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 3 2
TF FapR Malonyl-CoA Fatty acid biosynthesis 5 3
TF Fnr Oxygen Anaerobic metabolism 2 3
TF Fur Iron ion, (Fe2+) Iron homeostasis 14 11
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 5 3
TF GltC2 Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF GltR unknown 3 3
TF HisR Histidine Histidine biosynthesis 2 1
TF HrcA Heat shock Heat shock response 3 3
TF HxlR Formaldehyde Ribulose monophosphate pathway 1 1
TF IolR1 Inositol utilization 2 1
TF LexA DNA damage SOS response 19 17
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 2 1
TF MalR2 Maltose Maltose utilization; Maltodextrin utilization 3 1
TF MhqR 2-Methylhydroquinone and catechol resistance 4 2
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 1 1
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 1 1
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 3
TF OhrR tert-Butyl hydroperoxide; Diamide; Cumene hydroperoxide; Hydrogen peroxide Peroxide stress response 2 1
TF PdxW Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 9 8
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 13 3
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 6 6
TF RhaR Rhamnulose-1-phosphate Rhamnose utilization 3 3
TF RhgR Rhamnogalacturonides utilization 2 2
TF RmgR Rhamnogalacturonides utilization 2 1
TF ScrR Sucrose Sucrose utilization 2 2
TF SdpR SdpI, signal transduction protein Toxin-antitoxin system 1 1
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 37 23
TF UxuR Aldotetraouronic acid Glucuronate utilization 5 1
TF XylR Xylose Xylose utilization 9 2
TF YcxD Multidrug efflux 1 1
TF YdeF Metabolite transport 1 1
TF YdfD/YisV Metabolite transport 2 2
TF YfmP Metal efflux 2 2
TF YhcF Multidrug resistance; Multidrug efflux 2 1
TF YhcF2 Multidrug resistance; Multidrug efflux 2 2
TF YhgD 3 2
TF YodB/CatR Diamide; Quinone Oxidative stress response 6 4
TF YtcD 2 2
TF YvcP YvcQ, sensor histidine kinase Bacitracin resistance 1 1
TF YvfU YvfT, sensor histidine kinase Metabolite transport 1 1
TF YwbI Cell wall metabolism 2 1
TF YwrC Metal homeostasis 1 1
TF YybA Polyamine homeostasis 3 2
TF YybR/YdeP Multidrug resistance 5 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 8
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 5 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 1 1
RNA L10_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 3 1
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 1
RNA Purine Adenine; Guanine Purine metabolism 8 5
RNA PyrR PyrR Pyrimidine metabolism 2 1
RNA SAM S-adenosylmethionine Methionine biosynthesis 16 1
RNA T-box(Arg) Arg-tRNA Amino acid metabolism 2 1
RNA T-box(Asp) Asp-tRNA Amino acid metabolism 2 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 8 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 7 4
RNA T-box(Lys) Lys-tRNA Amino acid metabolism 2 2
RNA T-box(Met) Met-tRNA Amino acid metabolism 2 2
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 3 2
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 3 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 3 2
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 3 2
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 2 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 6 3
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ydaO-yuaA Cell wall metabolism; Osmotic stress response 5 5
RNA ykkC-yxkD Multidrug resistance 1 1
RNA ylbH 1 1
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