Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TnrA in Paenibacillus sp. JDR-2

Properties
Regulator type: Transcription factor
TF locus tag: Pjdr2_5154
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Regulog: TnrA - Bacillales
Statistics of regulated genes:
- Genes 71
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 304 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -255
Score: 4.6
Sequence: GGTGAGAAAATGTTACA
Locus tag: Pjdr2_4828
Name: appA
Funciton: Oligopeptide ABC transporter (substrate-binding)
Pjdr2_4828
appA
Oligopeptide ABC transporter (substrate-binding)
Position: -63
Score: 4.7
Sequence: TGTTATCTAACCTAACA
Locus tag: Pjdr2_2874
Name: glnQ
Funciton: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Locus tag: Pjdr2_2875
Name: glnH
Funciton: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
Locus tag: Pjdr2_2876
Name: glnM
Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Locus tag: Pjdr2_2877
Name: glnP
Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Pjdr2_2874
glnQ
Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Pjdr2_2875
glnH
Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
Pjdr2_2876
glnM
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Pjdr2_2877
glnP
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Position: -310
Score: 5
Sequence: TGTTATTATATATAACA
Position: -249
Score: 4
Sequence: TGTCAAGTATGTTGACA
Locus tag: Pjdr2_5917
Name: nasD
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: Pjdr2_5916
Name: nasE
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Pjdr2_5917
nasD
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Pjdr2_5916
nasE
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Position: -223
Score: 4
Sequence: TGTCAATAAACTTAACA
Position: -159
Score: 4
Sequence: TGTGACCTATATTGACA
Locus tag: Pjdr2_2174
Name: null
Funciton: Molybdenum cofactor synthesis domain protein
Locus tag: Pjdr2_2175
Name: nasB
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: Pjdr2_2176
Name: nasC
Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Locus tag: Pjdr2_2177
Name: null
Funciton: Formate dehydrogenase family accessory protein
Locus tag: Pjdr2_2178
Name: null
Funciton: Molybdopterin-guanine dinucleotide biosynthesis protein B
Pjdr2_2174
Molybdenum cofactor synthesis domain protein
Pjdr2_2175
nasB
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Pjdr2_2176
nasC
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Pjdr2_2177
Formate dehydrogenase family accessory protein
Pjdr2_2178
Molybdopterin-guanine dinucleotide biosynthesis protein B
Position: -159
Score: 4.2
Sequence: TGTGAAAAAACTTAACA
Position: -34
Score: 4.5
Sequence: TGTTAGTAAACATCACA
Locus tag: Pjdr2_2141
Name: nrgA
Funciton: Ammonium transporter
Locus tag: Pjdr2_2142
Name: null
Funciton: Predicted nucleotidyltransferase DUF294 family
Locus tag: Pjdr2_2143
Name: dpo3
Funciton: DNA polymerase III, epsilon subunit
Pjdr2_2141
nrgA
Ammonium transporter
Pjdr2_2142
Predicted nucleotidyltransferase DUF294 family
Pjdr2_2143
dpo3
DNA polymerase III, epsilon subunit
Position: -183
Score: 4.4
Sequence: TGGTATATTAATTAACA
Locus tag: Pjdr2_5833
Name: oppA
Funciton: Oligopeptide ABC transporter (binding lipoprotein)
Locus tag: Pjdr2_5832
Name: oppB
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: Pjdr2_5831
Name: oppC
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: Pjdr2_5830
Name: oppD
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Locus tag: Pjdr2_5829
Name: oppF
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Pjdr2_5833
oppA
Oligopeptide ABC transporter (binding lipoprotein)
Pjdr2_5832
oppB
Oligopeptide ABC transporter (permease)
Pjdr2_5831
oppC
Oligopeptide ABC transporter (permease)
Pjdr2_5830
oppD
Oligopeptide ABC transporter (ATP-binding protein)
Pjdr2_5829
oppF
Oligopeptide ABC transporter (ATP-binding protein)
Position: -55
Score: 4.9
Sequence: TGTTATATAAAGTAACA
Locus tag: Pjdr2_3327
Name: null
Funciton: Hypothetical protein
Locus tag: Pjdr2_3326
Name: null
Funciton: N-ethylammeline chlorohydrolase
Locus tag: Pjdr2_3325
Name: pucA
Funciton: Xanthine dehydrogenase subunit A
Locus tag: Pjdr2_3324
Name: pucB
Funciton: Xanthine dehydrogenase
Pjdr2_3327
Hypothetical protein
Pjdr2_3326
N-ethylammeline chlorohydrolase
Pjdr2_3325
pucA
Xanthine dehydrogenase subunit A
Pjdr2_3324
pucB
Xanthine dehydrogenase
Position: -179
Score: 4.1
Sequence: TGTGATCTATTGTTACG
Position: -96
Score: 4.3
Sequence: TGTAAGATATATTGACG
Locus tag: Pjdr2_3323
Name: null
Funciton: Basic membrane lipoprotein
Locus tag: Pjdr2_3322
Name: null
Funciton: ABC transporter related
Locus tag: Pjdr2_3321
Name: null
Funciton: Inner-membrane translocator
Locus tag: Pjdr2_3320
Name: null
Funciton: Inner-membrane translocator
Locus tag: Pjdr2_3319
Name: pucC
Funciton: Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)
Locus tag: Pjdr2_3318
Name: pucD
Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
Locus tag: Pjdr2_3317
Name: null
Funciton: (2Fe-2S)-binding domain protein
Locus tag: Pjdr2_3316
Name: null
Funciton: Uricase (EC 1.7.3.3)
Locus tag: Pjdr2_3315
Name: pucL
Funciton: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (EC 4.1.1.n1) / Uricase (EC 1.7.3.3)
Locus tag: Pjdr2_3314
Name: pucM
Funciton: 5-hydroxyisourate hydrolase
Locus tag: Pjdr2_3313
Name: pucH
Funciton: Allantoinase (EC 3.5.2.5)
Locus tag: Pjdr2_3312
Name: pucF
Funciton: Allantoate amidohydrolase (EC 3.5.3.9)
Locus tag: Pjdr2_3311
Name: pucG
Funciton: Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)
Pjdr2_3323
Basic membrane lipoprotein
Pjdr2_3322
ABC transporter related
Pjdr2_3321
Inner-membrane translocator
Pjdr2_3320
Inner-membrane translocator
Pjdr2_3319
pucC
Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)
Pjdr2_3318
pucD
Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
Pjdr2_3317
(2Fe-2S)-binding domain protein
Pjdr2_3316
Uricase (EC 1.7.3.3)
Pjdr2_3315
pucL
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (EC 4.1.1.n1) / Uricase (EC 1.7.3.3)
Pjdr2_3314
pucM
5-hydroxyisourate hydrolase
Pjdr2_3313
pucH
Allantoinase (EC 3.5.2.5)
Pjdr2_3312
pucF
Allantoate amidohydrolase (EC 3.5.3.9)
Pjdr2_3311
pucG
Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)
Position: -169
Score: 4.9
Sequence: TGTTATGAAATGTAACA
Position: -31
Score: 3.9
Sequence: AGTTAACAAATGTGACA
Locus tag: Pjdr2_3622
Name: null
Funciton: Cytosine deaminase (EC 3.5.4.1)
Locus tag: Pjdr2_3621
Name: null
Funciton: Extracellular ligand-binding receptor
Locus tag: Pjdr2_3620
Name: null
Funciton: Inner-membrane translocator
Locus tag: Pjdr2_3619
Name: null
Funciton: ABC transporter related
Locus tag: Pjdr2_3618
Name: null
Funciton: ABC transporter related
Locus tag: Pjdr2_3617
Name: null
Funciton: Cytosine deaminase (EC 3.5.4.1)
Pjdr2_3622
Cytosine deaminase (EC 3.5.4.1)
Pjdr2_3621
Extracellular ligand-binding receptor
Pjdr2_3620
Inner-membrane translocator
Pjdr2_3619
ABC transporter related
Pjdr2_3618
ABC transporter related
Pjdr2_3617
Cytosine deaminase (EC 3.5.4.1)
Position: -47
Score: 5.1
Sequence: TGTTATCTATTCTAACA
Locus tag: Pjdr2_6138
Name: null
Funciton: Creatininase
Locus tag: Pjdr2_6137
Name: null
Funciton: Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
Locus tag: Pjdr2_6136
Name: null
Funciton: FAD linked oxidase domain protein
Locus tag: Pjdr2_6135
Name: null
Funciton: Nitrate/sulfonate/bicarbonate ABC transporter permease
Locus tag: Pjdr2_6134
Name: null
Funciton: Cytosine deaminase (EC 3.5.4.1)
Locus tag: Pjdr2_6133
Name: null
Funciton: Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Locus tag: Pjdr2_6132
Name: null
Funciton: Flavoprotein
Locus tag: Pjdr2_6131
Name: null
Funciton: Cytosine deaminase (EC 3.5.4.1)
Pjdr2_6138
Creatininase
Pjdr2_6137
Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
Pjdr2_6136
FAD linked oxidase domain protein
Pjdr2_6135
Nitrate/sulfonate/bicarbonate ABC transporter permease
Pjdr2_6134
Cytosine deaminase (EC 3.5.4.1)
Pjdr2_6133
Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Pjdr2_6132
Flavoprotein
Pjdr2_6131
Cytosine deaminase (EC 3.5.4.1)
Position: -11
Score: 4.5
Sequence: TGATATAAAAAGTGACA
Locus tag: Pjdr2_2655
Name: thyB
Funciton: Thymidylate synthase (EC 2.1.1.45)
Locus tag: Pjdr2_2656
Name: dfrA
Funciton: Dihydrofolate reductase (EC 1.5.1.3)
Pjdr2_2655
thyB
Thymidylate synthase (EC 2.1.1.45)
Pjdr2_2656
dfrA
Dihydrofolate reductase (EC 1.5.1.3)
Position: -302
Score: 5.7
Sequence: TGTTAGATAATCTAACA
Position: -41
Score: 5
Sequence: TGTTAGAAAACATTACA
Locus tag: Pjdr2_5154
Name: tnrA
Funciton: Transcriptional regulator of nitrogen assimilation, MerR family
Pjdr2_5154
tnrA
Transcriptional regulator of nitrogen assimilation, MerR family
Position: -286
Score: 4.2
Sequence: TCTTATATTTTCTTTCA
Position: -113
Score: 3.9
Sequence: TGTCATGTATATTGACG
Locus tag: Pjdr2_0557
Name: urtA
Funciton: Urea ABC transporter, urea binding protein
Locus tag: Pjdr2_0558
Name: urtB
Funciton: Urea ABC transporter, permease protein UrtB
Locus tag: Pjdr2_0559
Name: urtC
Funciton: Urea ABC transporter, permease protein UrtC
Locus tag: Pjdr2_0560
Name: utrD
Funciton: Urea ABC transporter, ATPase protein UrtD
Locus tag: Pjdr2_0561
Name: urtE
Funciton: Urea ABC transporter, ATPase protein UrtE
Pjdr2_0557
urtA
Urea ABC transporter, urea binding protein
Pjdr2_0558
urtB
Urea ABC transporter, permease protein UrtB
Pjdr2_0559
urtC
Urea ABC transporter, permease protein UrtC
Pjdr2_0560
utrD
Urea ABC transporter, ATPase protein UrtD
Pjdr2_0561
urtE
Urea ABC transporter, ATPase protein UrtE
Position: -84
Score: 5.2
Sequence: TGTCATATTACCTAACA
Locus tag: Pjdr2_4328
Name: ureA
Funciton: Urease gamma subunit (EC 3.5.1.5)
Locus tag: Pjdr2_4327
Name: ureB
Funciton: Urease beta subunit (EC 3.5.1.5)
Locus tag: Pjdr2_4326
Name: ureC
Funciton: Urease alpha subunit (EC 3.5.1.5)
Locus tag: Pjdr2_4325
Name: ureF
Funciton: Urease accessory protein UreF
Locus tag: Pjdr2_4324
Name: ureG
Funciton: Urease accessory protein UreG
Locus tag: Pjdr2_4323
Name: ureD
Funciton: Urease accessory protein UreD
Pjdr2_4328
ureA
Urease gamma subunit (EC 3.5.1.5)
Pjdr2_4327
ureB
Urease beta subunit (EC 3.5.1.5)
Pjdr2_4326
ureC
Urease alpha subunit (EC 3.5.1.5)
Pjdr2_4325
ureF
Urease accessory protein UreF
Pjdr2_4324
ureG
Urease accessory protein UreG
Pjdr2_4323
ureD
Urease accessory protein UreD
Position: -39
Score: 3.9
Sequence: TGTAAGATTATACACAA
Locus tag: Pjdr2_4626
Name: ywdK
Funciton: Uncharacterized small membrane protein
Pjdr2_4626
ywdK
Uncharacterized small membrane protein
Position: -34
Score: 3.6
Sequence: GGTTAGTAAACCTGACT
Locus tag: Pjdr2_5903
Name: ywrD
Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Locus tag: Pjdr2_5902
Name: null
Funciton: Putative gamma-glutamyltransferase
Locus tag: Pjdr2_5901
Name: null
Funciton: Fumarylacetoacetate (FAA) hydrolase
Locus tag: Pjdr2_5900
Name: null
Funciton: Asparaginase/glutaminase
Locus tag: Pjdr2_5899
Name: null
Funciton: Peroxiredoxin
Pjdr2_5903
ywrD
Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Pjdr2_5902
Putative gamma-glutamyltransferase
Pjdr2_5901
Fumarylacetoacetate (FAA) hydrolase
Pjdr2_5900
Asparaginase/glutaminase
Pjdr2_5899
Peroxiredoxin
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