Regulon of PerR in Paenibacillus sp. JDR-2
| Regulator type: | Transcription factor |
| TF locus tag: | Pjdr2_1094 |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Oxidative stress response; Peroxide stress response |
| Effector: | Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) |
| Regulog: | PerR - Bacillales |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - FUR
- By effector - Hydrogen peroxide
- By effector - Manganese ion, (Mn2+)
- By effector - Iron ion, (Fe2+)
- By pathway - Oxidative stress response
- By pathway - Peroxide stress response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -69
Score: 5.3 Sequence: TTGTAATAATTTTAA
Locus tag: Pjdr2_0784
Name: trxB Funciton: Thioredoxin reductase |
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trxB
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Thioredoxin reductase
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Position: -91
Score: 6 Sequence: TTATAATTATTATAA
Locus tag: Pjdr2_5937
Name: yeiH Funciton: Putative membrane protein YeiH |
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yeiH
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Putative membrane protein YeiH
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Position: -209
Score: 4.1 Sequence: TTGGAAGCATTACAA
Locus tag: Pjdr2_1094
Name: perR Funciton: Transcriptional regulator of peroxide stress response, Fur family |
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perR
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Transcriptional regulator of peroxide stress response, Fur family
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Position: -47
Score: 5.5 Sequence: TTATAATCATTCTAA
Locus tag: Pjdr2_4440
Name: hemA Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70)
Locus tag: Pjdr2_4439
Name: hemX Funciton: HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase
Locus tag: Pjdr2_4438
Name: null Funciton: Siroheme synthase
Locus tag: Pjdr2_4437
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Pjdr2_4436
Name: hemD Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Pjdr2_4435
Name: hemB Funciton: Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)
Locus tag: Pjdr2_4434
Name: hemL Funciton: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
Locus tag: Pjdr2_4433
Name: yhcT Funciton: Putative RNA pseudouridine synthase |
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hemA
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Glutamyl-tRNA reductase (EC 1.2.1.70)
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hemX
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HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase
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Siroheme synthase
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hemC
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Porphobilinogen deaminase (EC 2.5.1.61)
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hemD
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Uroporphyrinogen-III synthase (EC 4.2.1.75)
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hemB
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Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)
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hemL
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Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
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yhcT
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Putative RNA pseudouridine synthase
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Position: -117
Score: 4.1 Sequence: GTGTAATAATGATAA
Position: -91
Score: 5.7 Sequence: TTATAATTATTCTAA
Position: -75
Score: 5.5 Sequence: TTATAATCATTCTAA
Locus tag: Pjdr2_1270
Name: fur Funciton: Transcriptional regulator for iron transport and metabolism |
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fur
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Transcriptional regulator for iron transport and metabolism
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Position: -37
Score: 5.5 Sequence: TTATAATCATTCTAA
Locus tag: Pjdr2_4210
Name: czcD Funciton: Co/Zn/Cd efflux system component |
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czcD
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Co/Zn/Cd efflux system component
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |