Regulon of CodY in Paenibacillus sp. JDR-2
| Regulator type: | Transcription factor |
| TF locus tag: | Pjdr2_3461 |
| Regulator family: | CodY |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Guanosine triphosphate; Branched-chain amino acids |
| Regulog: | CodY - Bacillales |
| Statistics of regulated genes: | |
| - Genes | 21 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - CodY
- By effector - Guanosine triphosphate
- By effector - Branched-chain amino acids
- By pathway - Amino acid metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -607
Score: 4.6 Sequence: AATTGACAGAATATT
Locus tag: Pjdr2_1025
Name: Pjdr2_1025 Funciton: Hypothetical protein
Locus tag: Pjdr2_1026
Name: leuA Funciton: 2-isopropylmalate synthase (EC 2.3.3.13) |
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Pjdr2_1025
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Hypothetical protein
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leuA
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2-isopropylmalate synthase (EC 2.3.3.13)
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Position: -6
Score: 4.4 Sequence: AACTTTATGAAAATT
Locus tag: Pjdr2_4798
Name: metI Funciton: Cystathionine gamma-synthase (EC 2.5.1.48)
Locus tag: Pjdr2_4797
Name: metC Funciton: Cystathionine beta-lyase (EC 4.4.1.8) |
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metI
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Cystathionine gamma-synthase (EC 2.5.1.48)
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metC
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Cystathionine beta-lyase (EC 4.4.1.8)
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Position: -129
Score: 4.6 Sequence: AATATTTTAAAAATA
Locus tag: Pjdr2_0817
Name: suhB Funciton: Inositol-1-monophosphatase (EC 3.1.3.25) |
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suhB
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Inositol-1-monophosphatase (EC 3.1.3.25)
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Position: -96
Score: 5.2 Sequence: AATTTTCAGATAATT
Locus tag: Pjdr2_0438
Name: ushA Funciton: 5'-nucleotidase (EC 3.1.3.5) |
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ushA
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5'-nucleotidase (EC 3.1.3.5)
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Position: -131
Score: 4.8 Sequence: AATTTACAAAAAATT
Locus tag: Pjdr2_3723
Name: Pjdr2_3723 Funciton: Oligopeptide/dipeptide ABC transporter, periplasmic component
Locus tag: Pjdr2_3722
Name: Pjdr2_3722 Funciton: Oligopeptide/dipeptide ABC transporter, permease components
Locus tag: Pjdr2_3721
Name: Pjdr2_3721 Funciton: Oligopeptide/dipeptide ABC transporter, permease components
Locus tag: Pjdr2_3720
Name: null Funciton: Oligopeptide/dipeptide ABC transporter, ATPase subunit
Locus tag: Pjdr2_3719
Name: Pjdr2_3719 Funciton: Oligopeptide/dipeptide ABC transporter, ATPase subunit
Locus tag: Pjdr2_3718
Name: Pjdr2_3718 Funciton: Hydrolase (HAD superfamily)-like protein
Locus tag: Pjdr2_3717
Name: Pjdr2_3717 Funciton: Transcriptional regulator, LacI family |
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Pjdr2_3723
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Oligopeptide/dipeptide ABC transporter, periplasmic component
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Pjdr2_3722
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Oligopeptide/dipeptide ABC transporter, permease components
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Pjdr2_3721
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Oligopeptide/dipeptide ABC transporter, permease components
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Oligopeptide/dipeptide ABC transporter, ATPase subunit
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Pjdr2_3719
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Oligopeptide/dipeptide ABC transporter, ATPase subunit
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Pjdr2_3718
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Hydrolase (HAD superfamily)-like protein
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Pjdr2_3717
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Transcriptional regulator, LacI family
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Position: -199
Score: 4.7 Sequence: AATTGTGTGAAAATT
Position: -103
Score: 5.3 Sequence: AATATTCAGAAAATT
Locus tag: Pjdr2_6138
Name: crnA Funciton: Creatininase (EC 3.5.2.10)
Locus tag: Pjdr2_6137
Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
Locus tag: Pjdr2_6136
Name: null Funciton: FAD linked oxidase domain protein
Locus tag: Pjdr2_6135
Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter permease
Locus tag: Pjdr2_6134
Name: null Funciton: Amidohydrolase 3
Locus tag: Pjdr2_6133
Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Locus tag: Pjdr2_6132
Name: wrbA Funciton: Flavoprotein WrbA
Locus tag: Pjdr2_6131
Name: codA Funciton: Cytosine deaminase (EC 3.5.4.1) |
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crnA
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Creatininase (EC 3.5.2.10)
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Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
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FAD linked oxidase domain protein
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Nitrate/sulfonate/bicarbonate ABC transporter permease
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Amidohydrolase 3
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Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
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wrbA
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Flavoprotein WrbA
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codA
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Cytosine deaminase (EC 3.5.4.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |