Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Shewanella denitrificans OS217

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 20 25
TF BetI Betaine Osmotic stress response 1 1
TF BglR Beta-glucoside Beta-glucosides utilization 3 4
TF BirA Biotin Biotin biosynthesis 2 2
TF CalR Utilization of aromatic compounds 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 133 61
TF CueR Copper ion, (Cu+) Copper resistance 1 1
TF Dnr Nitric oxide Denitrification 3 2
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 8 6
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 5
TF Fnr Oxygen Anaerobic metabolism 21 14
TF Fur Iron ion, (Fe2+) Iron homeostasis 25 23
TF GcvA Glycine Glycine metabolism 5 4
TF GlmR Glucosamine-6-phosphate Lipopolysaccharide biosynthesis 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 16 13
TF HmgQ 4-hydroxyphenylpyruvate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 2
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 3 2
TF IlvY Acetohydroxybutyrate; 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF LexA DNA damage SOS response 12 12
TF LiuR Branched-chain amino acid degradation 9 8
TF MalR Maltose Maltodextrin utilization 5 7
TF MetJ S-adenosylmethionine Methionine biosynthesis; Methionine metabolism 13 17
TF MetR Homocysteine Methionine biosynthesis 7 8
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 7 7
TF NhaR Potassium ion Osmotic stress response 2 1
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 1 1
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 6
TF PUR Purine metabolism 5 2
TF PdhR Pyruvate Pyruvate metabolism 9 6
TF PrpR 2-methylcitrate Methylcitrate utilization 1 3
TF PsrA Oleate Fatty acid degradation 18 16
TF SO0072 Hypothetical ABC transporter 2 2
TF SO1703 Multidrug resistance 1 1
TF SO3277 Multidrug resistance 2 4
TF SO3393 Drug resistance 2 4
TF SO3494 Multidrug resistance 1 2
TF SO4468 3 2
TF SO4705 2 2
TF SoxR Paraquat Superoxide stress response 4 3
TF TrpR Tryptophan Aromatic amino acid metabolism 2 2
TF TyrR Tyrosine; Phenylalanine Amino acid utilization 21 19
TF ZntR Zinc ion, (Zn2+); Cadmium, ion (Cd2+) Zinc resistance; Cadmium resistance 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 4 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 2 1
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 2
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 2
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA yybP-ykoY 1 1
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