Regulon of TPP in Shewanella denitrificans OS217

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Shewanellaceae
Under regulation:
- Genes	10
- Operons	2

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -164 Score: 71.4 Sequence: CCCTCGCGCCAAGGG... Locus tag: Sden_2321 Name: omp_thi Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent Locus tag: Sden_2320 Name: ykoF Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative Locus tag: Sden_2319 Name: pnuT Funciton: Predicted thiamin transporter PnuT Locus tag: Sden_2318 Name: thiK Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
	Sden_2321	omp_thi	predicted thiamin-specific outer membrane transporter, TonB-dependent
	Sden_2320	ykoF	Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
	Sden_2319	pnuT	Predicted thiamin transporter PnuT
	Sden_2318	thiK	predicted thiamine kinase, aminoglycoside phosphotransferase family
Position: -384 Score: 76.3 Sequence: ACCTCTTGTCGGAGT... Locus tag: Sden_1770 Name: thiC Funciton: Phosphomethylpyrimidine synthase Locus tag: Sden_1771 Name: thiDE Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Locus tag: Sden_1772 Name: thiF Funciton: Sulfur carrier protein adenylyltransferase ThiF Locus tag: Sden_1773 Name: thiS Funciton: Sulfur carrier protein ThiS Locus tag: Sden_1774 Name: thiG Funciton: Thiazole synthase Locus tag: Sden_1775 Name: thiH Funciton: 2-iminoacetate synthase (EC 1.3.99.n2)
	Sden_1770	thiC	Phosphomethylpyrimidine synthase
	Sden_1771	thiDE	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	Sden_1772	thiF	Sulfur carrier protein adenylyltransferase ThiF
	Sden_1773	thiS	Sulfur carrier protein ThiS
	Sden_1774	thiG	Thiazole synthase
	Sden_1775	thiH	2-iminoacetate synthase (EC 1.3.99.n2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD