Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Shewanella denitrificans OS217

Properties
Regulator type: Transcription factor
TF locus tag: Sden_3190
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Shewanellaceae
Statistics of regulated genes:
- Genes 111
- Operons 55
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2713 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -109
Score: 3.9
Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: Sden_1529
Name: fadI
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Sden_1530
Name: fadJ
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Sden_1529
fadI
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Sden_1530
fadJ
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -143
Score: 3.8
Sequence: AAAAGGGATATTTCTCACTAAT
Locus tag: Sden_2561
Name: icd
Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Sden_2561
icd
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Position: -316
Score: 4
Sequence: AAGTATGAATCGGCTCACACTG
Locus tag: Sden_3378
Name: yniC
Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC
Sden_3378
yniC
2-deoxyglucose-6-phosphate hydrolase YniC
Position: -122
Score: 4.3
Sequence: AAGCGTGAACAGCATCACGTAA
Locus tag: Sden_3210
Name: null
Funciton: hypothetical protein
Sden_3210
hypothetical protein
Position: -161
Score: 3.7
Sequence: TATTGTATACAATATCACGTTA
Locus tag: Sden_0887
Name: SO1388
Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9)
Sden_0887
SO1388
Xaa-Pro aminopeptidase (EC 3.4.11.9)
Position: -139
Score: 4.2
Sequence: ATTTATGAGTGCGATCAAAATT
Locus tag: Sden_1731
Name: ycbW
Funciton: probable membrane protein YcbW
Sden_1731
ycbW
probable membrane protein YcbW
Position: -145
Score: 4
Sequence: AGTCACGATATTGTTCACATAT
Locus tag: Sden_1024
Name: tsx
Funciton: nucleoside-specific channel-forming protein, Tsx
Sden_1024
tsx
nucleoside-specific channel-forming protein, Tsx
Position: -298
Score: 3.8
Sequence: TCTTGTTATTTAAACAACATTT
Position: -197
Score: 4.2
Sequence: TAATGTGATGCATAGCAGCCTT
Locus tag: Sden_3353
Name: SO4118
Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
Locus tag: Sden_3352
Name: mshH
Funciton: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Locus tag: Sden_3351
Name: mshI
Funciton: MSHA biogenesis protein MshI
Sden_3353
SO4118
NADP-dependent malic enzyme (EC 1.1.1.40)
Sden_3352
mshH
MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Sden_3351
mshI
MSHA biogenesis protein MshI
Position: -94
Score: 3.7
Sequence: AAATATTATTTCGAGCATAATA
Locus tag: Sden_3622
Name: cytcB
Funciton: diheme cytochrome c4
Sden_3622
cytcB
diheme cytochrome c4
Position: -186
Score: 4
Sequence: TTTTGTGATAAGCCTCCCAGCT
Locus tag: Sden_3569
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Sden_3570
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Sden_3571
Name: ccmC
Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Sden_3572
Name: ccmD
Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Sden_3573
Name: ccmE
Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone
Sden_3569
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Sden_3570
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Sden_3571
ccmC
cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Sden_3572
ccmD
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Sden_3573
ccmE
cytochrome c-type biogenesis protein CcmE, heme chaperone
Position: -157
Score: 4.6
Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: Sden_1528
Name: SO3090
Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: Sden_1527
Name: SO3091
Funciton: Conserved hypothetical protein
Locus tag: Sden_1526
Name: null
Funciton: hypothetical protein
Locus tag: Sden_1525
Name: SO3093
Funciton: von Willebrand factor type A domain protein
Locus tag: Sden_1524
Name: SO3094
Funciton: TPR domain protein in aerotolerance operon
Locus tag: Sden_1523
Name: SO3095
Funciton: hypothetical protein
Sden_1528
SO3090
MoxR-like ATPase in aerotolerance operon
Sden_1527
SO3091
Conserved hypothetical protein
Sden_1526
hypothetical protein
Sden_1525
SO3093
von Willebrand factor type A domain protein
Sden_1524
SO3094
TPR domain protein in aerotolerance operon
Sden_1523
SO3095
hypothetical protein
Position: -131
Score: 3.8
Sequence: AGCTGGGAGGCTTATCACAAAA
Position: -109
Score: 4.1
Sequence: AGGTGTGATTTTATTAACTTTA
Locus tag: Sden_3568
Name: scyA
Funciton: cytochrome c-type protein
Sden_3568
scyA
cytochrome c-type protein
Position: -139
Score: 4.1
Sequence: CAGTGTGAGCCGATTCATACTT
Position: -67
Score: 3.9
Sequence: AATTGTTAGCCTTATCACTATG
Locus tag: Sden_3377
Name: acnB
Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Sden_3377
acnB
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -157
Score: 4.1
Sequence: TAAATTGATCTAAATCAATTTA
Locus tag: Sden_1274
Name: cydA
Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: Sden_1275
Name: cydB
Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB
Sden_1274
cydA
cytochrome d ubiquinol oxidase, subunit I, CydA
Sden_1275
cydB
cytochrome d ubiquinol oxidase, subunit II, CydB
Position: -92
Score: 4.4
Sequence: AACTGTGATGAAGTTAACCAAA
Locus tag: Sden_3074
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
Sden_3074
udp
Uridine phosphorylase (EC 2.4.2.3)
Position: -34
Score: 3.9
Sequence: TAATATGACTAGAGTCAAACAT
Locus tag: Sden_0657
Name: SO0543
Funciton: hypothetical protein
Sden_0657
SO0543
hypothetical protein
Position: -148
Score: 3.9
Sequence: ATCTGCGGTATTTATCACATAA
Locus tag: Sden_2415
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Sden_2414
Name: feoB
Funciton: Ferrous iron transport protein B
Sden_2415
feoA
Ferrous iron transport protein A
Sden_2414
feoB
Ferrous iron transport protein B
Position: -136
Score: 4.1
Sequence: AACTGGTATTTTGATCACATTT
Locus tag: Sden_3193
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Sden_3192
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Sden_3191
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Sden_3193
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Sden_3192
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
Sden_3191
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Position: -204
Score: 3.7
Sequence: TATGATGATCCTATTCACAAGT
Locus tag: Sden_1765
Name: SO2535
Funciton: Predicted glutamine amidotransferase
Sden_1765
SO2535
Predicted glutamine amidotransferase
Position: -94
Score: 3.7
Sequence: AAATATTATTTCGAGCATAATA
Locus tag: Sden_3622
Name: cytcB
Funciton: Cytochrome c4
Sden_3622
cytcB
Cytochrome c4
Position: -182
Score: 3.8
Sequence: TATTATGCTCGAAATAATATTT
Locus tag: Sden_3621
Name: engB
Funciton: GTP-binding protein EngB
Sden_3621
engB
GTP-binding protein EngB
Position: -122
Score: 3.6
Sequence: AATTGATAGCTAGATCACAACG
Locus tag: Sden_2162
Name: hmgA
Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Sden_2162
hmgA
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Position: -35
Score: 3.9
Sequence: ATATTTTATGCCGTTCACTCAT
Locus tag: Sden_1453
Name: SO2806
Funciton: hypothetical protein
Sden_1453
SO2806
hypothetical protein
Position: -81
Score: 4.8
Sequence: AAATGTGATCCAGCTCAGCTTT
Locus tag: Sden_2384
Name: null
Funciton: hypothetical protein
Sden_2384
hypothetical protein
Position: -85
Score: 3.9
Sequence: AAATCTGCTTTGCTTCAAACAT
Locus tag: Sden_0388
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Sden_0387
Name: hemD
Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Sden_0386
Name: hemX
Funciton: Homolog of E. coli HemX protein
Locus tag: Sden_0385
Name: hemY
Funciton: HemY domain-containing protein
Sden_0388
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
Sden_0387
hemD
Uroporphyrinogen-III synthase (EC 4.2.1.75)
Sden_0386
hemX
Homolog of E. coli HemX protein
Sden_0385
hemY
HemY domain-containing protein
Position: -88
Score: 4.7
Sequence: GATTGTGATCCCTCTCGCATAT
Locus tag: Sden_2091
Name: Swoo_2741
Funciton: Alkyl hydroperoxide reductase subunit C-like protein
Sden_2091
Swoo_2741
Alkyl hydroperoxide reductase subunit C-like protein
Position: -100
Score: 3.7
Sequence: ATTTTTGACTAGGGTCAATATT
Locus tag: Sden_0534
Name: SO0572
Funciton: enoyl-CoA hydratase (EC 4.2.1.17)
Sden_0534
SO0572
enoyl-CoA hydratase (EC 4.2.1.17)
Position: -189
Score: 4.1
Sequence: TTATGTGATTATGGGCCCAAAT
Locus tag: Sden_1625
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Sden_1625
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -131
Score: 3.9
Sequence: AAATGTGATGTAGCCCCAAAAG
Locus tag: Sden_1912
Name: fumB
Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Sden_1912
fumB
Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Position: -186
Score: 4.3
Sequence: TGAGGTGAGCTGTGTCACAAAA
Locus tag: Sden_0101
Name: moaA
Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: Sden_0102
Name: moaC
Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: Sden_0103
Name: moaD
Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: Sden_0104
Name: moaE
Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: Sden_0105
Name: modA
Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Sden_0106
Name: modB
Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: Sden_0107
Name: modC
Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Sden_0101
moaA
molybdenum cofactor biosynthesis protein MoaA
Sden_0102
moaC
molybdenum cofactor biosynthesis protein MoaC
Sden_0103
moaD
molybdenum cofactor biosynthesis protein MoaD
Sden_0104
moaE
molybdenum cofactor biosynthesis protein MoaE
Sden_0105
modA
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Sden_0106
modB
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Sden_0107
modC
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Position: -165
Score: 3.8
Sequence: ATATGTCAACAATTTCATATTT
Locus tag: Sden_3073
Name: SO4131
Funciton: nucleoside-binding outer membrane protein
Sden_3073
SO4131
nucleoside-binding outer membrane protein
Position: -157
Score: 4.2
Sequence: TTTTGTGAATTAGATCAAGACT
Locus tag: Sden_2589
Name: ompW
Funciton: outer membrane protein W precursor
Sden_2589
ompW
outer membrane protein W precursor
Position: -146
Score: 4.3
Sequence: CGTTGTGATCTAGCTATCAATT
Locus tag: Sden_2161
Name: hmgR
Funciton: Tyrosine degradation transcriptional regulator, LysR family
Sden_2161
hmgR
Tyrosine degradation transcriptional regulator, LysR family
Position: -315
Score: 3.7
Sequence: AATTCTGACTCATCTTAAATTA
Locus tag: Sden_1224
Name: purE
Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Sden_1223
Name: purK
Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: Sden_1222
Name: SO3556
Funciton: cyclic nucleotide phosphodiesterase, putative
Sden_1224
purE
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Sden_1223
purK
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Sden_1222
SO3556
cyclic nucleotide phosphodiesterase, putative
Position: -182
Score: 4.7
Sequence: TTTTTTGATGTAGCTCAAGTAT
Locus tag: Sden_1851
Name: ccoN
Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: Sden_1850
Name: ccoO
Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: Sden_1849
Name: ccoQ
Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: Sden_1848
Name: ccoP
Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP
Sden_1851
ccoN
Cbb3-type cytochrome c oxidase, subunit I, CcoN
Sden_1850
ccoO
Cbb3-type cytochrome c oxidase, subunit II, CcoO
Sden_1849
ccoQ
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Sden_1848
ccoP
Cbb3-type cytochrome c oxidase, subunit III, CcoP
Position: -61
Score: 4.1
Sequence: AATTGTGCGCCATGGCACACTA
Locus tag: Sden_2595
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Sden_2594
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Sden_2595
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Sden_2594
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -77
Score: 4.8
Sequence: AAGTGTGACTTTGATCACGCTT
Position: -38
Score: 4.1
Sequence: TAATCTGAAGTTAAGCACATAA
Locus tag: Sden_2746
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
Sden_2746
yfiA-2
Ribosome hibernation protein YfiA
Position: -107
Score: 4.7
Sequence: AAATGTGATTTTGCGCACGCTA
Locus tag: Sden_2592
Name: fahA
Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: Sden_2591
Name: maiA
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Sden_2592
fahA
Fumarylacetoacetate hydrolase family protein
Sden_2591
maiA
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -116
Score: 4
Sequence: TTCTTTGATGTTAATCAAGCAT
Locus tag: Sden_0638
Name: Sfri_4035
Funciton: Conserved hypothetical signal peptide protein
Locus tag: Sden_0639
Name: Sfri_4034
Funciton: FMN-binding domain-containing protein
Locus tag: Sden_0640
Name: Sfri_4033
Funciton: PepSY-associated TM helix domain-containing protein
Sden_0638
Sfri_4035
Conserved hypothetical signal peptide protein
Sden_0639
Sfri_4034
FMN-binding domain-containing protein
Sden_0640
Sfri_4033
PepSY-associated TM helix domain-containing protein
Position: -175
Score: 4
Sequence: TAATGTGATTGGTATAAGAACA
Locus tag: Sden_3048
Name: Sputcn32_0834
Funciton: ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Locus tag: Sden_3049
Name: asnC
Funciton: regulatory protein AsnC
Sden_3048
Sputcn32_0834
ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Sden_3049
asnC
regulatory protein AsnC
Position: -175
Score: 4.4
Sequence: TCATATGATTTTCATCACACTT
Locus tag: Sden_2539
Name: etfB
Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Sden_2538
Name: etfA
Funciton: electron transfer flavoprotein, alpha subunit
Sden_2539
etfB
electron transfer flavoprotein, beta subunit
Sden_2538
etfA
electron transfer flavoprotein, alpha subunit
Position: -140
Score: 4.6
Sequence: TAATGTGAACTGGATCACTAAG
Locus tag: Sden_2730
Name: SO3541
Funciton: sodium:alanine symporter family protein
Sden_2730
SO3541
sodium:alanine symporter family protein
Position: -316
Score: 4.4
Sequence: AAAAGTGATCTTGATCAATATT
Locus tag: Sden_3517
Name: SO4606
Funciton: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: Sden_3518
Name: SO4607
Funciton: cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: Sden_3519
Name: coxG
Funciton: cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: Sden_3520
Name: SO4609
Funciton: cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Sden_3517
SO4606
cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Sden_3518
SO4607
cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Sden_3519
coxG
cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Sden_3520
SO4609
cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -94
Score: 3.6
Sequence: AAACACGATCTTGGTCAAAGTT
Locus tag: Sden_3190
Name: crp
Funciton: Cyclic AMP receptor protein Crp
Sden_3190
crp
Cyclic AMP receptor protein Crp
Position: -128
Score: 4.3
Sequence: CAGCGTGATTGCGATCGCATTA
Locus tag: Sden_0982
Name: nqrA-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: Sden_0983
Name: nqrB-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: Sden_0984
Name: nqrC-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: Sden_0985
Name: nqrD-1
Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: Sden_0986
Name: nqrE-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: Sden_0987
Name: nqrF-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
Sden_0982
nqrA-2
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Sden_0983
nqrB-2
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Sden_0984
nqrC-2
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Sden_0985
nqrD-1
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Sden_0986
nqrE-2
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Sden_0987
nqrF-2
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
Position: -137
Score: 4.5
Sequence: TTTTGTGATGTGCATCATTGTT
Locus tag: Sden_1640
Name: ydhD
Funciton: Probable monothiol glutaredoxin ydhD
Sden_1640
ydhD
Probable monothiol glutaredoxin ydhD
Position: -157
Score: 4.8
Sequence: TGAATTGATCTAGATCACATTT
Locus tag: Sden_2784
Name: cyaC
Funciton: Adenylate cyclase (EC 4.6.1.1)
Sden_2784
cyaC
Adenylate cyclase (EC 4.6.1.1)
Position: -4
Score: 3.8
Sequence: ATTCGTGAACTTGCGCAACATT
Locus tag: Sden_2910
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Sden_2911
Name: slyX
Funciton: protein SlyX
Locus tag: Sden_2912
Name: def-2
Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: Sden_2913
Name: SO1061
Funciton: TPR domain protein
Locus tag: Sden_2914
Name: spaP
Funciton: Putative lipoprotein
Locus tag: Sden_2915
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
Sden_2910
SO1064
FOG: WD40 repeat
Sden_2911
slyX
protein SlyX
Sden_2912
def-2
peptide deformylase (EC 3.5.1.88)
Sden_2913
SO1061
TPR domain protein
Sden_2914
spaP
Putative lipoprotein
Sden_2915
SO1059
membrane alanine aminopeptidase N (EC 3.4.11.2)
Position: -274
Score: 3.7
Sequence: TGGATTGATGCAAATTACAAAA
Position: -186
Score: 3.8
Sequence: AAGGGCGACAAACATCACAATT
Locus tag: Sden_2187
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Sden_2186
Name: SO1927.1
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Sden_2185
Name: sdhA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Sden_2184
Name: sdhB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Sden_2183
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Sden_2182
Name: sucB
Funciton: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Sden_2181
Name: sucC
Funciton: succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Sden_2180
Name: sucD
Funciton: succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Sden_2187
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
Sden_2186
SO1927.1
Succinate dehydrogenase hydrophobic membrane anchor protein
Sden_2185
sdhA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Sden_2184
sdhB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Sden_2183
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Sden_2182
sucB
dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Sden_2181
sucC
succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Sden_2180
sucD
succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Position: -106
Score: 4.3
Sequence: AACAATGATGCACATCACAAAA
Locus tag: Sden_1639
Name: sodB
Funciton: superoxide dismutase [Fe] (EC 1.15.1.1)
Sden_1639
sodB
superoxide dismutase [Fe] (EC 1.15.1.1)
Position: -291
Score: 4.7
Sequence: AAGCGTGATCAAAGTCACACTT
Locus tag: Sden_2745
Name: SO3421
Funciton: b-type cytochrome, putative
Sden_2745
SO3421
b-type cytochrome, putative
Position: -66
Score: 3.8
Sequence: ACTTGTGAATAGGATCATCATA
Locus tag: Sden_1764
Name: fadE2
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Sden_1764
fadE2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -233
Score: 5
Sequence: CTTAGTGATCCAGTTCACATTA
Position: -94
Score: 3.7
Sequence: AAGTTAGATCGGGGACACATTT
Locus tag: Sden_2731
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Sden_2731
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -208
Score: 4.3
Sequence: ATATGCGAGAGGGATCACAATC
Locus tag: Sden_2092
Name: SO2757
Funciton: Histidine permease YuiF
Sden_2092
SO2757
Histidine permease YuiF
Position: -130
Score: 4.6
Sequence: TTTTGTGACACAGCTCACCTCA
Locus tag: Sden_0100
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Sden_0100
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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