Regulon of Crp in Shewanella denitrificans OS217
| Regulator type: | Transcription factor |
| TF locus tag: | Sden_3190 |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Regulog: | Crp - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 111 |
| - Operons | 55 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - CRP
- By effector - Cyclic 3',5'-AMP
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -109
Score: 3.9 Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: Sden_1529
Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Sden_1530
Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
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fadI
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3-ketoacyl-CoA thiolase (EC 2.3.1.16)
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fadJ
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Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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Position: -143
Score: 3.8 Sequence: AAAAGGGATATTTCTCACTAAT
Locus tag: Sden_2561
Name: icd Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) |
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icd
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Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
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Position: -316
Score: 4 Sequence: AAGTATGAATCGGCTCACACTG
Locus tag: Sden_3378
Name: yniC Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC |
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yniC
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2-deoxyglucose-6-phosphate hydrolase YniC
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Position: -122
Score: 4.3 Sequence: AAGCGTGAACAGCATCACGTAA
Locus tag: Sden_3210
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -161
Score: 3.7 Sequence: TATTGTATACAATATCACGTTA
Locus tag: Sden_0887
Name: SO1388 Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9) |
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SO1388
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Xaa-Pro aminopeptidase (EC 3.4.11.9)
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Position: -139
Score: 4.2 Sequence: ATTTATGAGTGCGATCAAAATT
Locus tag: Sden_1731
Name: ycbW Funciton: probable membrane protein YcbW |
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ycbW
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probable membrane protein YcbW
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Position: -145
Score: 4 Sequence: AGTCACGATATTGTTCACATAT
Locus tag: Sden_1024
Name: tsx Funciton: nucleoside-specific channel-forming protein, Tsx |
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tsx
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nucleoside-specific channel-forming protein, Tsx
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Position: -298
Score: 3.8 Sequence: TCTTGTTATTTAAACAACATTT
Position: -197
Score: 4.2 Sequence: TAATGTGATGCATAGCAGCCTT
Locus tag: Sden_3353
Name: SO4118 Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
Locus tag: Sden_3352
Name: mshH Funciton: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Locus tag: Sden_3351
Name: mshI Funciton: MSHA biogenesis protein MshI |
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SO4118
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NADP-dependent malic enzyme (EC 1.1.1.40)
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mshH
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MSHA biogenesis protein MshH, GGDEF:EAL domain protein
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mshI
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MSHA biogenesis protein MshI
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Position: -94
Score: 3.7 Sequence: AAATATTATTTCGAGCATAATA
Locus tag: Sden_3622
Name: cytcB Funciton: diheme cytochrome c4 |
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cytcB
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diheme cytochrome c4
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Position: -186
Score: 4 Sequence: TTTTGTGATAAGCCTCCCAGCT
Locus tag: Sden_3569
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Sden_3570
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Sden_3571
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Sden_3572
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Sden_3573
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
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ccmA
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ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
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ccmB
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ABC transporter involved in cytochrome c biogenesis, CcmB subunit
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ccmC
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cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
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ccmD
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cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
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ccmE
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cytochrome c-type biogenesis protein CcmE, heme chaperone
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Position: -157
Score: 4.6 Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: Sden_1528
Name: SO3090 Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: Sden_1527
Name: SO3091 Funciton: Conserved hypothetical protein
Locus tag: Sden_1526
Name: null Funciton: hypothetical protein
Locus tag: Sden_1525
Name: SO3093 Funciton: von Willebrand factor type A domain protein
Locus tag: Sden_1524
Name: SO3094 Funciton: TPR domain protein in aerotolerance operon
Locus tag: Sden_1523
Name: SO3095 Funciton: hypothetical protein |
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SO3090
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MoxR-like ATPase in aerotolerance operon
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SO3091
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Conserved hypothetical protein
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hypothetical protein
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SO3093
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von Willebrand factor type A domain protein
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SO3094
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TPR domain protein in aerotolerance operon
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SO3095
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hypothetical protein
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Position: -131
Score: 3.8 Sequence: AGCTGGGAGGCTTATCACAAAA
Position: -109
Score: 4.1 Sequence: AGGTGTGATTTTATTAACTTTA
Locus tag: Sden_3568
Name: scyA Funciton: cytochrome c-type protein |
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scyA
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cytochrome c-type protein
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Position: -139
Score: 4.1 Sequence: CAGTGTGAGCCGATTCATACTT
Position: -67
Score: 3.9 Sequence: AATTGTTAGCCTTATCACTATG
Locus tag: Sden_3377
Name: acnB Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
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acnB
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aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
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Position: -157
Score: 4.1 Sequence: TAAATTGATCTAAATCAATTTA
Locus tag: Sden_1274
Name: cydA Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: Sden_1275
Name: cydB Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB |
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cydA
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cytochrome d ubiquinol oxidase, subunit I, CydA
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cydB
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cytochrome d ubiquinol oxidase, subunit II, CydB
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Position: -92
Score: 4.4 Sequence: AACTGTGATGAAGTTAACCAAA
Locus tag: Sden_3074
Name: udp Funciton: Uridine phosphorylase (EC 2.4.2.3) |
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udp
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Uridine phosphorylase (EC 2.4.2.3)
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Position: -34
Score: 3.9 Sequence: TAATATGACTAGAGTCAAACAT
Locus tag: Sden_0657
Name: SO0543 Funciton: hypothetical protein |
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SO0543
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hypothetical protein
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Position: -148
Score: 3.9 Sequence: ATCTGCGGTATTTATCACATAA
Locus tag: Sden_2415
Name: feoA Funciton: Ferrous iron transport protein A
Locus tag: Sden_2414
Name: feoB Funciton: Ferrous iron transport protein B |
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feoA
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Ferrous iron transport protein A
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feoB
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Ferrous iron transport protein B
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Position: -136
Score: 4.1 Sequence: AACTGGTATTTTGATCACATTT
Locus tag: Sden_3193
Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Sden_3192
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Sden_3191
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
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astC
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Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
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astA
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Arginine N-succinyltransferase (EC 2.3.1.109)
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astD
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Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
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Position: -204
Score: 3.7 Sequence: TATGATGATCCTATTCACAAGT
Locus tag: Sden_1765
Name: SO2535 Funciton: Predicted glutamine amidotransferase |
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SO2535
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Predicted glutamine amidotransferase
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Position: -94
Score: 3.7 Sequence: AAATATTATTTCGAGCATAATA
Locus tag: Sden_3622
Name: cytcB Funciton: Cytochrome c4 |
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cytcB
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Cytochrome c4
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Position: -182
Score: 3.8 Sequence: TATTATGCTCGAAATAATATTT
Locus tag: Sden_3621
Name: engB Funciton: GTP-binding protein EngB |
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engB
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GTP-binding protein EngB
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Position: -122
Score: 3.6 Sequence: AATTGATAGCTAGATCACAACG
Locus tag: Sden_2162
Name: hmgA Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) |
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hmgA
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Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
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Position: -35
Score: 3.9 Sequence: ATATTTTATGCCGTTCACTCAT
Locus tag: Sden_1453
Name: SO2806 Funciton: hypothetical protein |
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SO2806
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hypothetical protein
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Position: -81
Score: 4.8 Sequence: AAATGTGATCCAGCTCAGCTTT
Locus tag: Sden_2384
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -85
Score: 3.9 Sequence: AAATCTGCTTTGCTTCAAACAT
Locus tag: Sden_0388
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Sden_0387
Name: hemD Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Sden_0386
Name: hemX Funciton: Homolog of E. coli HemX protein
Locus tag: Sden_0385
Name: hemY Funciton: HemY domain-containing protein |
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hemC
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Porphobilinogen deaminase (EC 2.5.1.61)
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hemD
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Uroporphyrinogen-III synthase (EC 4.2.1.75)
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hemX
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Homolog of E. coli HemX protein
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hemY
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HemY domain-containing protein
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Position: -88
Score: 4.7 Sequence: GATTGTGATCCCTCTCGCATAT
Locus tag: Sden_2091
Name: Swoo_2741 Funciton: Alkyl hydroperoxide reductase subunit C-like protein |
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Swoo_2741
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Alkyl hydroperoxide reductase subunit C-like protein
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Position: -100
Score: 3.7 Sequence: ATTTTTGACTAGGGTCAATATT
Locus tag: Sden_0534
Name: SO0572 Funciton: enoyl-CoA hydratase (EC 4.2.1.17) |
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SO0572
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enoyl-CoA hydratase (EC 4.2.1.17)
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Position: -189
Score: 4.1 Sequence: TTATGTGATTATGGGCCCAAAT
Locus tag: Sden_1625
Name: fadD1 Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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fadD1
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Position: -131
Score: 3.9 Sequence: AAATGTGATGTAGCCCCAAAAG
Locus tag: Sden_1912
Name: fumB Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2) |
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fumB
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Fumarate hydratase class I, aerobic (EC 4.2.1.2)
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Position: -186
Score: 4.3 Sequence: TGAGGTGAGCTGTGTCACAAAA
Locus tag: Sden_0101
Name: moaA Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: Sden_0102
Name: moaC Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: Sden_0103
Name: moaD Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: Sden_0104
Name: moaE Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: Sden_0105
Name: modA Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Sden_0106
Name: modB Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: Sden_0107
Name: modC Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) |
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moaA
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molybdenum cofactor biosynthesis protein MoaA
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moaC
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molybdenum cofactor biosynthesis protein MoaC
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moaD
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molybdenum cofactor biosynthesis protein MoaD
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moaE
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molybdenum cofactor biosynthesis protein MoaE
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modA
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molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
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modB
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molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
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modC
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molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
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Position: -165
Score: 3.8 Sequence: ATATGTCAACAATTTCATATTT
Locus tag: Sden_3073
Name: SO4131 Funciton: nucleoside-binding outer membrane protein |
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SO4131
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nucleoside-binding outer membrane protein
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Position: -157
Score: 4.2 Sequence: TTTTGTGAATTAGATCAAGACT
Locus tag: Sden_2589
Name: ompW Funciton: outer membrane protein W precursor |
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ompW
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outer membrane protein W precursor
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Position: -146
Score: 4.3 Sequence: CGTTGTGATCTAGCTATCAATT
Locus tag: Sden_2161
Name: hmgR Funciton: Tyrosine degradation transcriptional regulator, LysR family |
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hmgR
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Tyrosine degradation transcriptional regulator, LysR family
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Position: -315
Score: 3.7 Sequence: AATTCTGACTCATCTTAAATTA
Locus tag: Sden_1224
Name: purE Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Sden_1223
Name: purK Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: Sden_1222
Name: SO3556 Funciton: cyclic nucleotide phosphodiesterase, putative |
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purE
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phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
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purK
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phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
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SO3556
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cyclic nucleotide phosphodiesterase, putative
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Position: -182
Score: 4.7 Sequence: TTTTTTGATGTAGCTCAAGTAT
Locus tag: Sden_1851
Name: ccoN Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: Sden_1850
Name: ccoO Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: Sden_1849
Name: ccoQ Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: Sden_1848
Name: ccoP Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP |
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ccoN
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Cbb3-type cytochrome c oxidase, subunit I, CcoN
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ccoO
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Cbb3-type cytochrome c oxidase, subunit II, CcoO
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ccoQ
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Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
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ccoP
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Cbb3-type cytochrome c oxidase, subunit III, CcoP
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Position: -61
Score: 4.1 Sequence: AATTGTGCGCCATGGCACACTA
Locus tag: Sden_2595
Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Sden_2594
Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
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phhA
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Phenylalanine-4-hydroxylase (EC 1.14.16.1)
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phhB
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Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
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Position: -77
Score: 4.8 Sequence: AAGTGTGACTTTGATCACGCTT
Position: -38
Score: 4.1 Sequence: TAATCTGAAGTTAAGCACATAA
Locus tag: Sden_2746
Name: yfiA-2 Funciton: Ribosome hibernation protein YfiA |
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yfiA-2
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Ribosome hibernation protein YfiA
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Position: -107
Score: 4.7 Sequence: AAATGTGATTTTGCGCACGCTA
Locus tag: Sden_2592
Name: fahA Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: Sden_2591
Name: maiA Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) |
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fahA
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Fumarylacetoacetate hydrolase family protein
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maiA
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Maleylacetoacetate isomerase (EC 5.2.1.2)
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Position: -116
Score: 4 Sequence: TTCTTTGATGTTAATCAAGCAT
Locus tag: Sden_0638
Name: Sfri_4035 Funciton: Conserved hypothetical signal peptide protein
Locus tag: Sden_0639
Name: Sfri_4034 Funciton: FMN-binding domain-containing protein
Locus tag: Sden_0640
Name: Sfri_4033 Funciton: PepSY-associated TM helix domain-containing protein |
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Sfri_4035
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Conserved hypothetical signal peptide protein
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Sfri_4034
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FMN-binding domain-containing protein
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Sfri_4033
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PepSY-associated TM helix domain-containing protein
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Position: -175
Score: 4 Sequence: TAATGTGATTGGTATAAGAACA
Locus tag: Sden_3048
Name: Sputcn32_0834 Funciton: ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Locus tag: Sden_3049
Name: asnC Funciton: regulatory protein AsnC |
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Sputcn32_0834
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ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
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asnC
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regulatory protein AsnC
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Position: -175
Score: 4.4 Sequence: TCATATGATTTTCATCACACTT
Locus tag: Sden_2539
Name: etfB Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Sden_2538
Name: etfA Funciton: electron transfer flavoprotein, alpha subunit |
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etfB
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electron transfer flavoprotein, beta subunit
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etfA
|
electron transfer flavoprotein, alpha subunit
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Position: -140
Score: 4.6 Sequence: TAATGTGAACTGGATCACTAAG
Locus tag: Sden_2730
Name: SO3541 Funciton: sodium:alanine symporter family protein |
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SO3541
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sodium:alanine symporter family protein
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Position: -316
Score: 4.4 Sequence: AAAAGTGATCTTGATCAATATT
Locus tag: Sden_3517
Name: SO4606 Funciton: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: Sden_3518
Name: SO4607 Funciton: cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: Sden_3519
Name: coxG Funciton: cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: Sden_3520
Name: SO4609 Funciton: cytochrome c oxidase polypeptide III (EC 1.9.3.1) |
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SO4606
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cytochrome c oxidase polypeptide II (EC 1.9.3.1)
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SO4607
|
cytochrome c oxidase polypeptide I (EC 1.9.3.1)
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coxG
|
cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
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SO4609
|
cytochrome c oxidase polypeptide III (EC 1.9.3.1)
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Position: -94
Score: 3.6 Sequence: AAACACGATCTTGGTCAAAGTT
Locus tag: Sden_3190
Name: crp Funciton: Cyclic AMP receptor protein Crp |
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crp
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Cyclic AMP receptor protein Crp
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Position: -128
Score: 4.3 Sequence: CAGCGTGATTGCGATCGCATTA
Locus tag: Sden_0982
Name: nqrA-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: Sden_0983
Name: nqrB-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: Sden_0984
Name: nqrC-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: Sden_0985
Name: nqrD-1 Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: Sden_0986
Name: nqrE-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: Sden_0987
Name: nqrF-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) |
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nqrA-2
|
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
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nqrB-2
|
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
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nqrC-2
|
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
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nqrD-1
|
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
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nqrE-2
|
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
|
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nqrF-2
|
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
|
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Position: -137
Score: 4.5 Sequence: TTTTGTGATGTGCATCATTGTT
Locus tag: Sden_1640
Name: ydhD Funciton: Probable monothiol glutaredoxin ydhD |
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ydhD
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Probable monothiol glutaredoxin ydhD
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Position: -157
Score: 4.8 Sequence: TGAATTGATCTAGATCACATTT
Locus tag: Sden_2784
Name: cyaC Funciton: Adenylate cyclase (EC 4.6.1.1) |
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cyaC
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Adenylate cyclase (EC 4.6.1.1)
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Position: -4
Score: 3.8 Sequence: ATTCGTGAACTTGCGCAACATT
Locus tag: Sden_2910
Name: SO1064 Funciton: FOG: WD40 repeat
Locus tag: Sden_2911
Name: slyX Funciton: protein SlyX
Locus tag: Sden_2912
Name: def-2 Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: Sden_2913
Name: SO1061 Funciton: TPR domain protein
Locus tag: Sden_2914
Name: spaP Funciton: Putative lipoprotein
Locus tag: Sden_2915
Name: SO1059 Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2) |
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SO1064
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FOG: WD40 repeat
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slyX
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protein SlyX
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def-2
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peptide deformylase (EC 3.5.1.88)
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SO1061
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TPR domain protein
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spaP
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Putative lipoprotein
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SO1059
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membrane alanine aminopeptidase N (EC 3.4.11.2)
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Position: -274
Score: 3.7 Sequence: TGGATTGATGCAAATTACAAAA
Position: -186
Score: 3.8 Sequence: AAGGGCGACAAACATCACAATT
Locus tag: Sden_2187
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Sden_2186
Name: SO1927.1 Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Sden_2185
Name: sdhA Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Sden_2184
Name: sdhB Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Sden_2183
Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Sden_2182
Name: sucB Funciton: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Sden_2181
Name: sucC Funciton: succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Sden_2180
Name: sucD Funciton: succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
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sdhC
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Succinate dehydrogenase cytochrome b-556 subunit
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SO1927.1
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Succinate dehydrogenase hydrophobic membrane anchor protein
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sdhA
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succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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sdhB
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succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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sucA
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2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
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sucB
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dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
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sucC
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succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
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sucD
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succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
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Position: -106
Score: 4.3 Sequence: AACAATGATGCACATCACAAAA
Locus tag: Sden_1639
Name: sodB Funciton: superoxide dismutase [Fe] (EC 1.15.1.1) |
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sodB
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superoxide dismutase [Fe] (EC 1.15.1.1)
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Position: -291
Score: 4.7 Sequence: AAGCGTGATCAAAGTCACACTT
Locus tag: Sden_2745
Name: SO3421 Funciton: b-type cytochrome, putative |
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SO3421
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b-type cytochrome, putative
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Position: -66
Score: 3.8 Sequence: ACTTGTGAATAGGATCATCATA
Locus tag: Sden_1764
Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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fadE2
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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Position: -233
Score: 5 Sequence: CTTAGTGATCCAGTTCACATTA
Position: -94
Score: 3.7 Sequence: AAGTTAGATCGGGGACACATTT
Locus tag: Sden_2731
Name: phk Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
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phk
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Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
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Position: -208
Score: 4.3 Sequence: ATATGCGAGAGGGATCACAATC
Locus tag: Sden_2092
Name: SO2757 Funciton: Histidine permease YuiF |
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SO2757
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Histidine permease YuiF
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Position: -130
Score: 4.6 Sequence: TTTTGTGACACAGCTCACCTCA
Locus tag: Sden_0100
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |