Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Shewanella denitrificans OS217

Properties
Regulator type: Transcription factor
TF locus tag: Sden_1843
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes 32
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 541 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -133
Score: 4.5
Sequence: GTGATGTGCATCAT
Locus tag: Sden_1640
Name: ydhD
Funciton: Glutaredoxin-related protein
Sden_1640
ydhD
Glutaredoxin-related protein
Position: -153
Score: 5
Sequence: TTGATCTAGATCAC
Locus tag: Sden_2784
Name: cyaB
Funciton: Adenylate cyclase (EC 4.6.1.1)
Sden_2784
cyaB
Adenylate cyclase (EC 4.6.1.1)
Position: -153
Score: 5.3
Sequence: TTGATCTAAATCAA
Locus tag: Sden_1274
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Sden_1275
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Sden_1276
Name: ybgT
Funciton: Cyd operon protein YbgT
Sden_1274
cydA
Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Sden_1275
cydB
Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Sden_1276
ybgT
Cyd operon protein YbgT
Position: -220
Score: 5.3
Sequence: TTGATCCAGATCAA
Position: -178
Score: 5.1
Sequence: TTGATGTAGCTCAA
Locus tag: Sden_1851
Name: ccoN
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: Sden_1850
Name: ccoO
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: Sden_1849
Name: ccoQ
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: Sden_1848
Name: ccoP
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: Sden_1847
Name: ccoH
Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: Sden_1846
Name: ccoI
Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Sden_1845
Name: ccoS
Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: Sden_1844
Name: ccoX
Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: Sden_1843
Name: fnr
Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Sden_1851
ccoN
Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Sden_1850
ccoO
Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Sden_1849
ccoQ
Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Sden_1848
ccoP
Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Sden_1847
ccoH
Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Sden_1846
ccoI
Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Sden_1845
ccoS
Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Sden_1844
ccoX
Cytochrome c oxidase, cbb3-type, predicted component
Sden_1843
fnr
Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -69
Score: 5.1
Sequence: CTGATCTAGATCAA
Locus tag: Sden_1495
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Sden_1496
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sden_1497
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sden_1498
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Sden_1499
Name: napC2
Funciton: Cytochrome c-type protein NapC
Sden_1495
napE2
Periplasmic nitrate reductase component NapE
Sden_1496
napD2
Periplasmic nitrate reductase component NapD
Sden_1497
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Sden_1498
napB2
Nitrate reductase cytochrome c550-type subunit
Sden_1499
napC2
Cytochrome c-type protein NapC
Position: -69
Score: 4.2
Sequence: TTGATATAGCTCAC
Locus tag: Sden_1842
Name: uspE
Funciton: Universal stress protein E
Sden_1842
uspE
Universal stress protein E
Position: -153
Score: 4.5
Sequence: GTGAATTAGATCAA
Position: -103
Score: 5.3
Sequence: TTGATCCAGATCAA
Locus tag: Sden_2589
Name: ompW
Funciton: Outer membrane protein W precursor
Sden_2589
ompW
Outer membrane protein W precursor
Position: -222
Score: 4.4
Sequence: CTGAGCTAAATCAA
Locus tag: Sden_0860
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Sden_0859
Name: cydC
Funciton: Transport ATP-binding protein CydC
Sden_0860
cydD
Transport ATP-binding protein CydD
Sden_0859
cydC
Transport ATP-binding protein CydC
Position: -36
Score: 4.6
Sequence: TTGATTTGGATCAC
Locus tag: Sden_0990
Name: bfr2
Funciton: Bacterioferritin
Locus tag: Sden_0991
Name: bfr1
Funciton: Bacterioferritin
Sden_0990
bfr2
Bacterioferritin
Sden_0991
bfr1
Bacterioferritin
Position: -312
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: Sden_3517
Name: coxB
Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: Sden_3518
Name: coxA
Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: Sden_3519
Name: coxZ
Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: Sden_3520
Name: coxC
Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Sden_3517
coxB
Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Sden_3518
coxA
Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Sden_3519
coxZ
Cytochrome c oxidase biogenesis protein, predicted copper delivery
Sden_3520
coxC
Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -166
Score: 5.5
Sequence: ATGATCTAGATCAA
Locus tag: Sden_1419
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sden_1420
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Sden_1419
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Sden_1420
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -87
Score: 4.5
Sequence: TTGATGCAGGTCAA
Locus tag: Sden_0539
Name: SO0579
Funciton: Predicted serine/threonine protein kinase
Sden_0539
SO0579
Predicted serine/threonine protein kinase
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