Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of ArgR in Shewanella denitrificans OS217

Properties
Regulator type: Transcription factor
TF locus tag: Sden_0825
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Regulog: ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes 25
- Operons 13
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 502 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -300
Score: 4.4
Sequence: TATGGCTATTTATTCACT
Position: -188
Score: 4.8
Sequence: ATTCAATTTATATGCAGA
Locus tag: Sden_3193
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Sden_3192
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Sden_3191
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Sden_3193
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Sden_3192
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
Sden_3191
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Position: -98
Score: 4.1
Sequence: ACTCTATTTTTATGCAGC
Locus tag: Sden_1037
Name: argW
Funciton: Predicted arginine uptake transporter, COG3314 family
Sden_1037
argW
Predicted arginine uptake transporter, COG3314 family
Position: -201
Score: 4.7
Sequence: CTTGCATTTTTAATCACT
Locus tag: Sden_2329
Name: astB
Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
Sden_2329
astB
Succinylarginine dihydrolase (EC 3.5.3.23)
Position: -235
Score: 4.3
Sequence: AATAAATATGTATTCACA
Position: -214
Score: 3.7
Sequence: ATTGCATAACAATTTGAT
Position: -145
Score: 4.3
Sequence: ATCGAATATAAAAGCACA
Locus tag: Sden_0250
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Sden_0250
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Position: -81
Score: 4.7
Sequence: TTTGAAAAATTATTCAAA
Position: -58
Score: 4.2
Sequence: CTTGAATGAATGTTCAAA
Position: -31
Score: 4
Sequence: CTTGAATGCACATTCAAG
Locus tag: Sden_1230
Name: SO3392
Funciton: NADH-dependent flavin oxidoreductase, Oye family
Sden_1230
SO3392
NADH-dependent flavin oxidoreductase, Oye family
Position: -266
Score: 4.9
Sequence: AATGAGTTTTTATGCAAA
Position: -163
Score: 4.3
Sequence: GCTGATTAATCATGCAAA
Locus tag: Sden_3031
Name: potF
Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
Locus tag: Sden_3030
Name: potG
Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
Locus tag: Sden_3029
Name: potH
Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
Locus tag: Sden_3028
Name: potI
Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
Sden_3031
potF
Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
Sden_3030
potG
Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
Sden_3029
potH
Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
Sden_3028
potI
Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
Position: -235
Score: 4.4
Sequence: ATTGAATTTAAAAGAATT
Position: -121
Score: 4
Sequence: AAGTCATAATAATTCACT
Position: -37
Score: 4.8
Sequence: CGTGCATGATTATTCAAT
Locus tag: Sden_1095
Name: pbpG
Funciton: D-alanyl-D-alanine endopeptidase
Sden_1095
pbpG
D-alanyl-D-alanine endopeptidase
Position: -359
Score: 5.1
Sequence: AGTGAATATTTAGTCAGT
Locus tag: Sden_2790
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Sden_2791
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Sden_2790
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Sden_2791
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -95
Score: 3.7
Sequence: ACTCAAAATTAACTCAGC
Position: -70
Score: 3.9
Sequence: ACTGTATAAAAAACCAGT
Position: -48
Score: 3.7
Sequence: ACTGTTTATCAATACAGT
Locus tag: Sden_1151
Name: recN
Funciton: DNA repair protein RecN
Sden_1151
recN
DNA repair protein RecN
Position: -89
Score: 5.7
Sequence: AGTGAATTTTTATTCACT
Locus tag: Sden_0825
Name: argR
Funciton: Arginine metabolism transcriptional regulator ArgR
Sden_0825
argR
Arginine metabolism transcriptional regulator ArgR
Position: -212
Score: 4.3
Sequence: TCTGTAATAAAATGCACT
Position: -144
Score: 5.4
Sequence: ACTGCATTAAAATGCAAT
Position: -123
Score: 4
Sequence: ATTGCGTTTTTATTGATG
Locus tag: Sden_0329
Name: argA
Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
Sden_0329
argA
N-acetylglutamate synthase (EC 2.3.1.1)
Position: -153
Score: 4.6
Sequence: AGTGATTATTAAGTCACA
Locus tag: Sden_3414
Name: ilvG
Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: Sden_3413
Name: ilvM
Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: Sden_3412
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: Sden_3411
Name: ilvA
Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
Sden_3414
ilvG
Acetolactate synthase large subunit (EC 2.2.1.6)
Sden_3413
ilvM
Acetolactate synthase small subunit (EC 2.2.1.6)
Sden_3412
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
Sden_3411
ilvA
Threonine dehydratase biosynthetic (EC 4.3.1.19)
Position: -53
Score: 4.9
Sequence: AGTGCATAAAGATTCATT
Locus tag: Sden_0251
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Sden_0252
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Sden_0253
Name: argG
Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Sden_0254
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
Sden_0251
argB
Acetylglutamate kinase (EC 2.7.2.8)
Sden_0252
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)
Sden_0253
argG
Argininosuccinate synthase (EC 6.3.4.5)
Sden_0254
argH
Argininosuccinate lyase (EC 4.3.2.1)
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