Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Bacillus clausii KSM-K16

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ABC1167 Sugar utilization 1 2
TF ABC3918 1 1
TF AdaA DNA alkylation response 3 2
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 4 5
TF ArsR Arsenite; Cadmium, ion (Cd2+); Silver ion, (Ag+) Arsenic resistance 3 4
TF AseR Arsenite Arsenic resistance 1 1
TF BC2903 Multidrug resistance; Multidrug efflux 2 2
TF BH0651 Multidrug resistance; Multidrug efflux 2 3
TF BH1250 Sugar utilization 2 2
TF BH1516 Maltose utilization 3 2
TF BirA Biotin Biotin biosynthesis 2 2
TF BkdR Branched-chain amino acid degradation 2 1
TF Btr Bacillibactin; Fe-Bacillibactin Iron homeostasis 1 1
TF CcpA HPr, phosphocarrier protein Carbon catabolism 92 57
TF CcpN Gluconeogenesis 2 2
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CitR Citrate metabolism 2 2
TF CitT Citrate Citrate utilization 2 1
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 88 9
TF CsoR Copper ion, (Cu+) Copper resistance 4 3
TF CtsR Heat shock Heat shock response 4 3
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 8 3
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 2 1
TF DesR Cold shock response 1 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 4
TF FapR Malonyl-CoA Fatty acid biosynthesis 6 3
TF Fnr Oxygen Anaerobic metabolism 4 2
TF FruR Fructose-6-phosphate Fructose utilization 1 1
TF Fur Iron ion, (Fe2+) Iron homeostasis 15 15
TF GamR Glucosamine-6-phosphate Glucosamine utilization 4 5
TF GanR Beta-galactosides Galactan utilization 2 1
TF GarR Galactarate Galactarate utilization 1 1
TF GbsR (YuaC) Choline Glycine betaine synthesis 1 1
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 3 1
TF GltC2 Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF GlvR2 Maltose-6-phosphate Maltose utilization 2 3
TF GntR2 D-gluconate Gluconate utilization 3 1
TF GudR Glucarate utilization; Galactarate utilization 3 3
TF HisR Histidine Histidine biosynthesis 2 2
TF HrcA Heat shock Heat shock response 3 3
TF IolR 2-deoxy-5-keto-D-gluconate 6-phosphate Inositol utilization 3 2
TF LexA DNA damage SOS response 17 10
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF LicR HPr, phosphocarrier protein; LicB, lichenan-specific enzyme IIB PTS component Beta-glucosides utilization 1 1
TF LutR L-lactate Lactate utilization 2 1
TF MalR2 Maltose Maltose utilization; Maltodextrin utilization 3 3
TF MhqR 2-Methylhydroquinone and catechol resistance 4 3
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 2 1
TF NiaR Niacin NAD biosynthesis 3 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF NsrR Nitric oxide Nitrosative stress response 4 4
TF PdxR Pyridoxal-5-phosphate Pyridoxine biosynthesis 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 6 6
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 10 11
TF RbsR Ribose Ribose utilization 3 1
TF Rex NADH Energy metabolism 5 6
TF RmgR Rhamnogalacturonides utilization 1 1
TF RocR Ornithine; L-citrulline Arginine degradation; Ornithine degradation 3 4
TF ScrR Sucrose Sucrose utilization 2 1
TF ScrR2 Sucrose-6-phosphate Sucrose utilization 1 2
TF SdpR SdpI, signal transduction protein Toxin-antitoxin system 1 1
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 36 18
TF TreR Trehalose-6-phosphate Trehalose utilization 2 3
TF UxuR Aldotetraouronic acid Glucuronate utilization 4 3
TF UxuR Glucuronate utilization 2 4
TF XylR Xylose Xylose utilization 5 2
TF YbfI Drug resistance 1 1
TF YbzH Metabolite transport 2 2
TF YdfD/YisV Metabolite transport 3 2
TF YdfF 3 3
TF YhcF Multidrug resistance; Multidrug efflux 2 1
TF YhcF2 Multidrug resistance; Multidrug efflux 1 2
TF YvcP YvcQ, sensor histidine kinase Bacitracin resistance 1 1
TF YybA Polyamine homeostasis 3 3
TF YybR/YdeP Multidrug resistance 4 3
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 8 6
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 3 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 3 2
RNA Glycine Glycine Glycine metabolism 2 2
RNA L10_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 3 2
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 2
RNA Purine Adenine; Guanine Purine metabolism 7 3
RNA PyrR PyrR Pyrimidine metabolism 2 2
RNA SAM S-adenosylmethionine Methionine biosynthesis 16 8
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 2 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 3 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 3 2
RNA T-box(Lys) Lys-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 1 1
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 2 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 3 2
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 3 2
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 3 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 5 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 9 5
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ykkC-yxkD Multidrug resistance 1 1
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 2 1
RNA yybP-ykoY 3 2
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