Regulon of TnrA in Bacillus clausii KSM-K16

Properties
Regulator type:	Transcription factor
TF locus tag:	ABC1760
Regulator family:	MerR
Regulation mode:	repressor (activator)
Biological process:	Nitrogen assimilation
Effector:	NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Regulog:	TnrA - Bacillales
Statistics of regulated genes:
- Genes	61
- Operons	15
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 304 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - MerR
By effector - NrgB, ammonium uptake protein
By effector - NrgA, ammonium uptake protein
By effector - Feedback-inhibited GlnA, glutamine synthetase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -173 Score: 4.2 Sequence: TGTAAACAATCCTAACA Locus tag: ABC3733 Name: arcD Funciton: Arginine/ornithine antiporter ArcD Locus tag: ABC3732 Name: pucH Funciton: Allantoinase (EC 3.5.2.5) Locus tag: ABC3731 Name: null Funciton: Glutamyl-tRNA(Gln) amidotransferase subunit A
	ABC3733	arcD	Arginine/ornithine antiporter ArcD
	ABC3732	pucH	Allantoinase (EC 3.5.2.5)
	ABC3731		Glutamyl-tRNA(Gln) amidotransferase subunit A
Position: -8 Score: 3.4 Sequence: GGACAGCAATGATCACA Locus tag: ABC0770 Name: glnQ Funciton: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2) Locus tag: ABC0771 Name: glnH Funciton: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) Locus tag: ABC0772 Name: glnM Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2) Locus tag: ABC0773 Name: glnP Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
	ABC0770	glnQ	Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
	ABC0771	glnH	Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
	ABC0772	glnM	Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
	ABC0773	glnP	Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Position: -89 Score: 5.2 Sequence: TGTCACAAAATATTACA Locus tag: ABC1620 Name: nasF Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) Locus tag: ABC1621 Name: nasD Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) Locus tag: ABC1622 Name: nasE Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) Locus tag: ABC1623 Name: nasB Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) Locus tag: ABC1624 Name: nasC Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) Locus tag: ABC1625 Name: nasA Funciton: Nitrate/nitrite transporter
	ABC1620	nasF	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
	ABC1621	nasD	Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
	ABC1622	nasE	Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
	ABC1623	nasB	Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
	ABC1624	nasC	Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
	ABC1625	nasA	Nitrate/nitrite transporter
Position: -84 Score: 5.2 Sequence: TGTTAGATATCCTGACA Locus tag: ABC3928 Name: nrgA Funciton: Ammonium transporter Locus tag: ABC3927 Name: null Funciton: Predicted nucleotidyltransferase DUF294 family Locus tag: ABC3926 Name: dpo3 Funciton: DNA polymerase III, epsilon subunit
	ABC3928	nrgA	Ammonium transporter
	ABC3927		Predicted nucleotidyltransferase DUF294 family
	ABC3926	dpo3	DNA polymerase III, epsilon subunit
Position: -139 Score: 5.7 Sequence: TGTCAGATTTTCTGACA Locus tag: ABC0565 Name: gsiC Funciton: Glutathione transport system permease Locus tag: ABC0566 Name: gsiD Funciton: Glutathione transport system permease Locus tag: ABC0567 Name: appD Funciton: Glutathione import ATP-binding protein Locus tag: ABC0568 Name: appF Funciton: Glutathione import ATP-binding protein
	ABC0565	gsiC	Glutathione transport system permease
	ABC0566	gsiD	Glutathione transport system permease
	ABC0567	appD	Glutathione import ATP-binding protein
	ABC0568	appF	Glutathione import ATP-binding protein
Position: -135 Score: 5.1 Sequence: TGTTAGAAAACATAACA Locus tag: ABC1238 Name: appD Funciton: Glutathione import ATP-binding protein Locus tag: ABC1239 Name: appF Funciton: Glutathione import ATP-binding protein Locus tag: ABC1240 Name: gsiA Funciton: Glutathione import ATP-binding protein Locus tag: ABC1241 Name: gsiC Funciton: Glutathione transport system permease Locus tag: ABC1242 Name: gsiD Funciton: Glutathione transport system permease
	ABC1238	appD	Glutathione import ATP-binding protein
	ABC1239	appF	Glutathione import ATP-binding protein
	ABC1240	gsiA	Glutathione import ATP-binding protein
	ABC1241	gsiC	Glutathione transport system permease
	ABC1242	gsiD	Glutathione transport system permease
Position: -446 Score: 5 Sequence: TGTTATATCTTCTTACA Locus tag: ABC3095 Name: null Funciton: Transcriptional regulator, Lrp/AsnC family Locus tag: ABC3094 Name: oppD Funciton: Oligopeptide ABC transporter ATP-binding protein Locus tag: ABC3093 Name: oppF Funciton: Oligopeptide ABC transporter ATP-binding protein Locus tag: ABC3092 Name: appB Funciton: Oligopeptide ABC transporter (permease) Locus tag: ABC3091 Name: oppC Funciton: Oligopeptide ABC transporter permease Locus tag: ABC3090 Name: oppA Funciton: Oligopeptide ABC transporter substrate-binding protein
	ABC3095		Transcriptional regulator, Lrp/AsnC family
	ABC3094	oppD	Oligopeptide ABC transporter ATP-binding protein
	ABC3093	oppF	Oligopeptide ABC transporter ATP-binding protein
	ABC3092	appB	Oligopeptide ABC transporter (permease)
	ABC3091	oppC	Oligopeptide ABC transporter permease
	ABC3090	oppA	Oligopeptide ABC transporter substrate-binding protein
Position: -111 Score: 4.2 Sequence: TGTGAGAAAATCTATTA Locus tag: ABC2416 Name: appD Funciton: Oligopeptide ABC transporter (ATP-binding protein) Locus tag: ABC2415 Name: appF Funciton: oligopeptide ABC transporter (ATP-binding protein) Locus tag: ABC2414 Name: appA Funciton: Oligopeptide ABC transporter (substrate-binding) Locus tag: ABC2413 Name: appB Funciton: Oligopeptide ABC transporter (permease) Locus tag: ABC2412 Name: appC Funciton: Oligopeptide ABC transporter (permease)
	ABC2416	appD	Oligopeptide ABC transporter (ATP-binding protein)
	ABC2415	appF	oligopeptide ABC transporter (ATP-binding protein)
	ABC2414	appA	Oligopeptide ABC transporter (substrate-binding)
	ABC2413	appB	Oligopeptide ABC transporter (permease)
	ABC2412	appC	Oligopeptide ABC transporter (permease)
Position: -558 Score: 4.3 Sequence: TGTAAGATTTCTTATCA Locus tag: ABC3661 Name: appA Funciton: Oligopeptide ABC transporter (oligopeptide-binding protein) Locus tag: ABC3660 Name: appB Funciton: Oligopeptide ABC transporter (permease) Locus tag: ABC3659 Name: null Funciton: Oligopeptide ABC transporter (permease) Locus tag: ABC3658 Name: appD Funciton: Oligopeptide ABC transporter (ATP-binding protein) Locus tag: ABC3657 Name: oppF Funciton: Oligopeptide ABC transporter (ATP-binding protein) Locus tag: ABC3656 Name: null Funciton: Peptidase Locus tag: ABC3655 Name: null Funciton: Sodium-dependent dicarboxylate transporter Locus tag: ABC3654 Name: null Funciton: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) Locus tag: ABC3653 Name: null Funciton: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
	ABC3661	appA	Oligopeptide ABC transporter (oligopeptide-binding protein)
	ABC3660	appB	Oligopeptide ABC transporter (permease)
	ABC3659		Oligopeptide ABC transporter (permease)
	ABC3658	appD	Oligopeptide ABC transporter (ATP-binding protein)
	ABC3657	oppF	Oligopeptide ABC transporter (ATP-binding protein)
	ABC3656		Peptidase
	ABC3655		Sodium-dependent dicarboxylate transporter
	ABC3654		N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
	ABC3653		N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
Position: -321 Score: 4.1 Sequence: CGTAAAGAAATGTAACA Position: -212 Score: 5.2 Sequence: TGTCAGAGAATCTGACA Locus tag: ABC4033 Name: null Funciton: Cytosine/purine/uracil/thiamine/allantoin permease family protein Locus tag: ABC4032 Name: null Funciton: Cytosine deaminase (EC 3.5.4.1)
	ABC4033		Cytosine/purine/uracil/thiamine/allantoin permease family protein
	ABC4032		Cytosine deaminase (EC 3.5.4.1)
Position: -270 Score: 4.5 Sequence: TGTGAAAAAACCTTACA Position: -141 Score: 4 Sequence: GGGGAGAAGATCTAACA Locus tag: ABC3747 Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein Locus tag: ABC3746 Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter permease Locus tag: ABC3745 Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Locus tag: ABC3744 Name: pucA Funciton: Xanthine dehydrogenase subunit A Locus tag: ABC3743 Name: pucB Funciton: Xanthine dehydrogenase Locus tag: ABC3742 Name: pucC Funciton: Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4) Locus tag: ABC3741 Name: pucD Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) Locus tag: ABC3740 Name: pucE Funciton: Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)
	ABC3747		Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
	ABC3746		Nitrate/sulfonate/bicarbonate ABC transporter permease
	ABC3745		Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
	ABC3744	pucA	Xanthine dehydrogenase subunit A
	ABC3743	pucB	Xanthine dehydrogenase
	ABC3742	pucC	Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)
	ABC3741	pucD	Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
	ABC3740	pucE	Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)
Position: -173 Score: 4.2 Sequence: TGTAAACAATCCTAACA Locus tag: ABC3733 Name: arcD Funciton: Arginine/ornithine antiporter ArcD Locus tag: ABC3732 Name: pucH Funciton: Allantoinase (EC 3.5.2.5) Locus tag: ABC3731 Name: null Funciton: Glutamyl-tRNA(Gln) amidotransferase subunit A
	ABC3733	arcD	Arginine/ornithine antiporter ArcD
	ABC3732	pucH	Allantoinase (EC 3.5.2.5)
	ABC3731		Glutamyl-tRNA(Gln) amidotransferase subunit A
Position: -99 Score: 5.5 Sequence: TGTTAGATTTTCTTACA Position: -57 Score: 5 Sequence: TGTGATATATTGTTACA Locus tag: ABC1760 Name: tnrA Funciton: Transcriptional regulator of nitrogen assimilation, MerR family
	ABC1760	tnrA	Transcriptional regulator of nitrogen assimilation, MerR family
Position: -181 Score: 4.8 Sequence: TGACAGAAAATCTTCCA Locus tag: ABC3708 Name: yrbD Funciton: Sodium/proton-dependent alanine transporter
	ABC3708	yrbD	Sodium/proton-dependent alanine transporter
Position: -103 Score: 5.7 Sequence: TGTCAGATAATCTGACA Locus tag: ABC3940 Name: glnA2 Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	ABC3940	glnA2	Glutamine synthetase type I (EC 6.3.1.2)

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of TnrA in Bacillus clausii KSM-K16

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --