Regulon of TnrA in Bacillus clausii KSM-K16
| Regulator type: | Transcription factor |
| TF locus tag: | ABC1760 |
| Regulator family: | MerR |
| Regulation mode: | repressor (activator) |
| Biological process: | Nitrogen assimilation |
| Effector: | NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase |
| Regulog: | TnrA - Bacillales |
| Statistics of regulated genes: | |
| - Genes | 61 |
| - Operons | 15 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - MerR
- By effector - NrgB, ammonium uptake protein
- By effector - NrgA, ammonium uptake protein
- By effector - Feedback-inhibited GlnA, glutamine synthetase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -173
Score: 4.2 Sequence: TGTAAACAATCCTAACA
Locus tag: ABC3733
Name: arcD Funciton: Arginine/ornithine antiporter ArcD
Locus tag: ABC3732
Name: pucH Funciton: Allantoinase (EC 3.5.2.5)
Locus tag: ABC3731
Name: null Funciton: Glutamyl-tRNA(Gln) amidotransferase subunit A |
|||
|
arcD
|
Arginine/ornithine antiporter ArcD
|
||
|
pucH
|
Allantoinase (EC 3.5.2.5)
|
||
|
Glutamyl-tRNA(Gln) amidotransferase subunit A
|
|||
|
Position: -8
Score: 3.4 Sequence: GGACAGCAATGATCACA
Locus tag: ABC0770
Name: glnQ Funciton: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Locus tag: ABC0771
Name: glnH Funciton: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
Locus tag: ABC0772
Name: glnM Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Locus tag: ABC0773
Name: glnP Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2) |
|||
|
glnQ
|
Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
|
||
|
glnH
|
Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
|
||
|
glnM
|
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
|
||
|
glnP
|
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
|
||
|
Position: -89
Score: 5.2 Sequence: TGTCACAAAATATTACA
Locus tag: ABC1620
Name: nasF Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: ABC1621
Name: nasD Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: ABC1622
Name: nasE Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Locus tag: ABC1623
Name: nasB Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: ABC1624
Name: nasC Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Locus tag: ABC1625
Name: nasA Funciton: Nitrate/nitrite transporter |
|||
|
nasF
|
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
|
||
|
nasD
|
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
|
||
|
nasE
|
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
|
||
|
nasB
|
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
|
||
|
nasC
|
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
|
||
|
nasA
|
Nitrate/nitrite transporter
|
||
|
Position: -84
Score: 5.2 Sequence: TGTTAGATATCCTGACA
Locus tag: ABC3928
Name: nrgA Funciton: Ammonium transporter
Locus tag: ABC3927
Name: null Funciton: Predicted nucleotidyltransferase DUF294 family
Locus tag: ABC3926
Name: dpo3 Funciton: DNA polymerase III, epsilon subunit |
|||
|
nrgA
|
Ammonium transporter
|
||
|
Predicted nucleotidyltransferase DUF294 family
|
|||
|
dpo3
|
DNA polymerase III, epsilon subunit
|
||
|
Position: -139
Score: 5.7 Sequence: TGTCAGATTTTCTGACA
Locus tag: ABC0565
Name: gsiC Funciton: Glutathione transport system permease
Locus tag: ABC0566
Name: gsiD Funciton: Glutathione transport system permease
Locus tag: ABC0567
Name: appD Funciton: Glutathione import ATP-binding protein
Locus tag: ABC0568
Name: appF Funciton: Glutathione import ATP-binding protein |
|||
|
gsiC
|
Glutathione transport system permease
|
||
|
gsiD
|
Glutathione transport system permease
|
||
|
appD
|
Glutathione import ATP-binding protein
|
||
|
appF
|
Glutathione import ATP-binding protein
|
||
|
Position: -135
Score: 5.1 Sequence: TGTTAGAAAACATAACA
Locus tag: ABC1238
Name: appD Funciton: Glutathione import ATP-binding protein
Locus tag: ABC1239
Name: appF Funciton: Glutathione import ATP-binding protein
Locus tag: ABC1240
Name: gsiA Funciton: Glutathione import ATP-binding protein
Locus tag: ABC1241
Name: gsiC Funciton: Glutathione transport system permease
Locus tag: ABC1242
Name: gsiD Funciton: Glutathione transport system permease |
|||
|
appD
|
Glutathione import ATP-binding protein
|
||
|
appF
|
Glutathione import ATP-binding protein
|
||
|
gsiA
|
Glutathione import ATP-binding protein
|
||
|
gsiC
|
Glutathione transport system permease
|
||
|
gsiD
|
Glutathione transport system permease
|
||
|
Position: -446
Score: 5 Sequence: TGTTATATCTTCTTACA
Locus tag: ABC3095
Name: null Funciton: Transcriptional regulator, Lrp/AsnC family
Locus tag: ABC3094
Name: oppD Funciton: Oligopeptide ABC transporter ATP-binding protein
Locus tag: ABC3093
Name: oppF Funciton: Oligopeptide ABC transporter ATP-binding protein
Locus tag: ABC3092
Name: appB Funciton: Oligopeptide ABC transporter (permease)
Locus tag: ABC3091
Name: oppC Funciton: Oligopeptide ABC transporter permease
Locus tag: ABC3090
Name: oppA Funciton: Oligopeptide ABC transporter substrate-binding protein |
|||
|
Transcriptional regulator, Lrp/AsnC family
|
|||
|
oppD
|
Oligopeptide ABC transporter ATP-binding protein
|
||
|
oppF
|
Oligopeptide ABC transporter ATP-binding protein
|
||
|
appB
|
Oligopeptide ABC transporter (permease)
|
||
|
oppC
|
Oligopeptide ABC transporter permease
|
||
|
oppA
|
Oligopeptide ABC transporter substrate-binding protein
|
||
|
Position: -111
Score: 4.2 Sequence: TGTGAGAAAATCTATTA
Locus tag: ABC2416
Name: appD Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Locus tag: ABC2415
Name: appF Funciton: oligopeptide ABC transporter (ATP-binding protein)
Locus tag: ABC2414
Name: appA Funciton: Oligopeptide ABC transporter (substrate-binding)
Locus tag: ABC2413
Name: appB Funciton: Oligopeptide ABC transporter (permease)
Locus tag: ABC2412
Name: appC Funciton: Oligopeptide ABC transporter (permease) |
|||
|
appD
|
Oligopeptide ABC transporter (ATP-binding protein)
|
||
|
appF
|
oligopeptide ABC transporter (ATP-binding protein)
|
||
|
appA
|
Oligopeptide ABC transporter (substrate-binding)
|
||
|
appB
|
Oligopeptide ABC transporter (permease)
|
||
|
appC
|
Oligopeptide ABC transporter (permease)
|
||
|
Position: -558
Score: 4.3 Sequence: TGTAAGATTTCTTATCA
Locus tag: ABC3661
Name: appA Funciton: Oligopeptide ABC transporter (oligopeptide-binding protein)
Locus tag: ABC3660
Name: appB Funciton: Oligopeptide ABC transporter (permease)
Locus tag: ABC3659
Name: null Funciton: Oligopeptide ABC transporter (permease)
Locus tag: ABC3658
Name: appD Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Locus tag: ABC3657
Name: oppF Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Locus tag: ABC3656
Name: null Funciton: Peptidase
Locus tag: ABC3655
Name: null Funciton: Sodium-dependent dicarboxylate transporter
Locus tag: ABC3654
Name: null Funciton: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
Locus tag: ABC3653
Name: null Funciton: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) |
|||
|
appA
|
Oligopeptide ABC transporter (oligopeptide-binding protein)
|
||
|
appB
|
Oligopeptide ABC transporter (permease)
|
||
|
Oligopeptide ABC transporter (permease)
|
|||
|
appD
|
Oligopeptide ABC transporter (ATP-binding protein)
|
||
|
oppF
|
Oligopeptide ABC transporter (ATP-binding protein)
|
||
|
Peptidase
|
|||
|
Sodium-dependent dicarboxylate transporter
|
|||
|
N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
|
|||
|
N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
|
|||
|
Position: -321
Score: 4.1 Sequence: CGTAAAGAAATGTAACA
Position: -212
Score: 5.2 Sequence: TGTCAGAGAATCTGACA
Locus tag: ABC4033
Name: null Funciton: Cytosine/purine/uracil/thiamine/allantoin permease family protein
Locus tag: ABC4032
Name: null Funciton: Cytosine deaminase (EC 3.5.4.1) |
|||
|
Cytosine/purine/uracil/thiamine/allantoin permease family protein
|
|||
|
Cytosine deaminase (EC 3.5.4.1)
|
|||
|
Position: -270
Score: 4.5 Sequence: TGTGAAAAAACCTTACA
Position: -141
Score: 4 Sequence: GGGGAGAAGATCTAACA
Locus tag: ABC3747
Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
Locus tag: ABC3746
Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter permease
Locus tag: ABC3745
Name: null Funciton: Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Locus tag: ABC3744
Name: pucA Funciton: Xanthine dehydrogenase subunit A
Locus tag: ABC3743
Name: pucB Funciton: Xanthine dehydrogenase
Locus tag: ABC3742
Name: pucC Funciton: Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)
Locus tag: ABC3741
Name: pucD Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
Locus tag: ABC3740
Name: pucE Funciton: Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) |
|||
|
Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
|
|||
|
Nitrate/sulfonate/bicarbonate ABC transporter permease
|
|||
|
Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
|
|||
|
pucA
|
Xanthine dehydrogenase subunit A
|
||
|
pucB
|
Xanthine dehydrogenase
|
||
|
pucC
|
Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)
|
||
|
pucD
|
Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
|
||
|
pucE
|
Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)
|
||
|
Position: -173
Score: 4.2 Sequence: TGTAAACAATCCTAACA
Locus tag: ABC3733
Name: arcD Funciton: Arginine/ornithine antiporter ArcD
Locus tag: ABC3732
Name: pucH Funciton: Allantoinase (EC 3.5.2.5)
Locus tag: ABC3731
Name: null Funciton: Glutamyl-tRNA(Gln) amidotransferase subunit A |
|||
|
arcD
|
Arginine/ornithine antiporter ArcD
|
||
|
pucH
|
Allantoinase (EC 3.5.2.5)
|
||
|
Glutamyl-tRNA(Gln) amidotransferase subunit A
|
|||
|
Position: -99
Score: 5.5 Sequence: TGTTAGATTTTCTTACA
Position: -57
Score: 5 Sequence: TGTGATATATTGTTACA
Locus tag: ABC1760
Name: tnrA Funciton: Transcriptional regulator of nitrogen assimilation, MerR family |
|||
|
tnrA
|
Transcriptional regulator of nitrogen assimilation, MerR family
|
||
|
Position: -181
Score: 4.8 Sequence: TGACAGAAAATCTTCCA
Locus tag: ABC3708
Name: yrbD Funciton: Sodium/proton-dependent alanine transporter |
|||
|
yrbD
|
Sodium/proton-dependent alanine transporter
|
||
|
Position: -103
Score: 5.7 Sequence: TGTCAGATAATCTGACA
Locus tag: ABC3940
Name: glnA2 Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
|||
|
glnA2
|
Glutamine synthetase type I (EC 6.3.1.2)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |