Regulon of GarR in Bacillus clausii KSM-K16
| Regulator type: | Transcription factor |
| TF locus tag: | ABC3016 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Galactarate utilization |
| Effector: | Galactarate |
| Regulog: | GarR - Bacillales |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 1 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - GntR/Others
- By effector - Galactarate
- By pathway - Galactarate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -42
Score: 6.3 Sequence: TGTGATATATCAGATTTCATA
Locus tag: ABC3016
Name: garR Funciton: Predicted transcriptional regulator for galactarate utilization, GntR family
Locus tag: ABC3015
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: ABC3014
Name: kgsD Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # in D-glucarate/D-galactarate catabolism
Locus tag: ABC3013
Name: garD2 Funciton: D-galactarate dehydratase (EC 4.2.1.42), alternative enzyme
Locus tag: ABC3012
Name: tctC_Gar Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for galactarate
Locus tag: ABC3011
Name: tctB_Gar Funciton: Tripartite tricarboxylate transporter family small permease component, putative transporter for galactarate
Locus tag: ABC3010
Name: tctA_Gar Funciton: Tripartite tricarboxylate transporter family large permease component, putative transporter for galactarate |
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garR
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Predicted transcriptional regulator for galactarate utilization, GntR family
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kdgD
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5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
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kgsD
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Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # in D-glucarate/D-galactarate catabolism
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garD2
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D-galactarate dehydratase (EC 4.2.1.42), alternative enzyme
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tctC_Gar
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Tripartite tricarboxylate transporter family receptor, putative transporter for galactarate
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tctB_Gar
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Tripartite tricarboxylate transporter family small permease component, putative transporter for galactarate
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tctA_Gar
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Tripartite tricarboxylate transporter family large permease component, putative transporter for galactarate
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |