Regulog GarR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Galactarate utilization
Effector:	Galactarate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - GntR/Others
By effector - Galactarate
By pathway - Galactarate utilization

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16	7	1
Bacillus halodurans C-125
Bacillus licheniformis DSM 13
Bacillus pumilus SAFR-032
Bacillus subtilis subsp. subtilis str. 168
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831	9	2
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
OB2846	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	* Oceanobacillus iheyensis HTE831 Site: position = -41 score = 6.65147 sequence = GTTGATATATCAGATATCAAC Gene: OB2846: (R)-2-hydroxyacid dehydrogenase, similar to L-sulfolactate dehydrogenase (EC 1.1.1.272)	Paenibacillus sp. JDR-2	(R)-2-hydroxyacid dehydrogenase, similar to L-sulfolactate dehydrogenase (EC 1.1.1.272)
kdgD	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC3015: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB2845: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Paenibacillus sp. JDR-2	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
OB2844	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB2844: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Paenibacillus sp. JDR-2	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
garD2	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC3013: D-galactarate dehydratase (EC 4.2.1.42), alternative enzyme	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB2843: D-galactarate dehydratase (EC 4.2.1.42), alternative enzyme	Paenibacillus sp. JDR-2	D-galactarate dehydratase (EC 4.2.1.42), alternative enzyme
ycbG	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB2842: Predicted 5-dehydro-4-deoxyglucarate regulator YcbG	Paenibacillus sp. JDR-2	Predicted 5-dehydro-4-deoxyglucarate regulator YcbG
ycbC	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB2841: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Paenibacillus sp. JDR-2	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
kgsD	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC3014: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # in D-glucarate/D-galactarate catabolism	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB2840: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # in D-glucarate/D-galactarate catabolism	Paenibacillus sp. JDR-2	Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # in D-glucarate/D-galactarate catabolism
garR	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	* Bacillus clausii KSM-K16 Site: position = -42 score = 6.27438 sequence = TGTGATATATCAGATTTCATA Gene: ABC3016: Predicted transcriptional regulator for galactarate utilization, GntR family	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB2847: Predicted transcriptional regulator for galactarate utilization, GntR family	Paenibacillus sp. JDR-2	Predicted transcriptional regulator for galactarate utilization, GntR family
tctC_Gar	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC3012: Tripartite tricarboxylate transporter family receptor, putative transporter for galactarate	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Tripartite tricarboxylate transporter family receptor, putative transporter for galactarate
tctB_Gar	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC3011: Tripartite tricarboxylate transporter family small permease component, putative transporter for galactarate	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Tripartite tricarboxylate transporter family small permease component, putative transporter for galactarate
tctA_Gar	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC3010: Tripartite tricarboxylate transporter family large permease component, putative transporter for galactarate	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Tripartite tricarboxylate transporter family large permease component, putative transporter for galactarate
OB2848	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	* Oceanobacillus iheyensis HTE831 Site: position = -48 score = 6.56782 sequence = TCTGATATATCATATACCAAA Gene: OB2848: Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)	Paenibacillus sp. JDR-2	Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GarR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --