Regulog GarR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Galactarate utilization |
| Effector: | Galactarate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - GntR/Others
- By effector - Galactarate
- By pathway - Galactarate utilization
| Genome | Genes | Operons |
|---|---|---|
| Anoxybacillus flavithermus WK1 | ||
| Bacillus amyloliquefaciens FZB42 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus clausii KSM-K16 | 7 | 1 |
| Bacillus halodurans C-125 | ||
| Bacillus licheniformis DSM 13 | ||
| Bacillus pumilus SAFR-032 | ||
| Bacillus subtilis subsp. subtilis str. 168 | ||
| Geobacillus kaustophilus HTA426 | ||
| Oceanobacillus iheyensis HTE831 | 9 | 2 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| OB2846 |
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Oceanobacillus iheyensis HTE831 Site: position = -41 score = 6.65147 sequence = GTTGATATATCAGATATCAAC Gene: OB2846: (R)-2-hydroxyacid dehydrogenase, similar to L-sulfolactate dehydrogenase (EC 1.1.1.272) |
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(R)-2-hydroxyacid dehydrogenase, similar to L-sulfolactate dehydrogenase (EC 1.1.1.272) |
| kdgD |
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Gene: ABC3015: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
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Gene: OB2845: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
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5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
| OB2844 |
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Gene: OB2844: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
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D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
| garD2 |
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Gene: ABC3013: D-galactarate dehydratase (EC 4.2.1.42), alternative enzyme |
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Gene: OB2843: D-galactarate dehydratase (EC 4.2.1.42), alternative enzyme |
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D-galactarate dehydratase (EC 4.2.1.42), alternative enzyme |
| ycbG |
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Gene: OB2842: Predicted 5-dehydro-4-deoxyglucarate regulator YcbG |
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Predicted 5-dehydro-4-deoxyglucarate regulator YcbG |
| ycbC |
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Gene: OB2841: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
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5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
| kgsD |
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Gene: ABC3014: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # in D-glucarate/D-galactarate catabolism |
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Gene: OB2840: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # in D-glucarate/D-galactarate catabolism |
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Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # in D-glucarate/D-galactarate catabolism |
| garR |
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Bacillus clausii KSM-K16 Site: position = -42 score = 6.27438 sequence = TGTGATATATCAGATTTCATA Gene: ABC3016: Predicted transcriptional regulator for galactarate utilization, GntR family |
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Gene: OB2847: Predicted transcriptional regulator for galactarate utilization, GntR family |
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Predicted transcriptional regulator for galactarate utilization, GntR family |
| tctC_Gar |
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Gene: ABC3012: Tripartite tricarboxylate transporter family receptor, putative transporter for galactarate |
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Tripartite tricarboxylate transporter family receptor, putative transporter for galactarate |
| tctB_Gar |
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Gene: ABC3011: Tripartite tricarboxylate transporter family small permease component, putative transporter for galactarate |
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Tripartite tricarboxylate transporter family small permease component, putative transporter for galactarate |
| tctA_Gar |
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Gene: ABC3010: Tripartite tricarboxylate transporter family large permease component, putative transporter for galactarate |
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Tripartite tricarboxylate transporter family large permease component, putative transporter for galactarate |
| OB2848 |
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Oceanobacillus iheyensis HTE831 Site: position = -48 score = 6.56782 sequence = TCTGATATATCATATACCAAA Gene: OB2848: Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) |
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Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |