Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Shewanella sediminis HAW-EB3

Type Regulator Effector Pathway Genes Sites
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 20 43
TF AzrR Paraquat Superoxide stress response 2 2
TF BetI Betaine Osmotic stress response 1 1
TF BirA Biotin Biotin biosynthesis 2 2
TF CalR Utilization of aromatic compounds 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 232 428
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF DeoR Nucleoside utilization 1 1
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 7 7
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 4 4
TF Fnr Oxygen Anaerobic metabolism 40 56
TF Fur Iron ion, (Fe2+) Iron homeostasis 23 28
TF GcvA Glycine Glycine metabolism 6 7
TF GlmR Glucosamine-6-phosphate Lipopolysaccharide biosynthesis 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 19 33
TF HmgQ 4-hydroxyphenylpyruvate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 3
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 7 10
TF IlvY Acetohydroxybutyrate; 2-Acetolactate Branched-chain amino acid biosynthesis 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 5 7
TF LexA DNA damage SOS response 9 11
TF LiuR Branched-chain amino acid degradation 6 7
TF LldR L-lactate Lactate utilization 1 1
TF MetR Homocysteine Methionine biosynthesis 4 6
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 5 6
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 16 20
TF NhaR Potassium ion Osmotic stress response 2 2
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 2 2
TF NorR Nitric oxide Nitrosative stress response 3 5
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 4 5
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 5
TF PdhR Pyruvate Pyruvate metabolism 6 8
TF PflR Formate Formate metabolism 3 4
TF PrpR 2-methylcitrate Methylcitrate utilization 2 3
TF PsrA Oleate Fatty acid degradation 16 19
TF PUR Purine metabolism 4 4
TF SdaR Glycerate Glycerate utilization 1 1
TF SO0072 Hypothetical ABC transporter 1 1
TF SO1415 3 3
TF SO1703 Multidrug resistance 1 1
TF SO1758 1 1
TF SO3277 Multidrug resistance 2 2
TF SO3393 Drug resistance 2 2
TF SO3627 2 2
TF SO4326 Multidrug resistance 1 1
TF SO4468 2 2
TF SO4705 2 2
TF TrpR Tryptophan Aromatic amino acid metabolism 2 2
TF TyrR Tyrosine; Phenylalanine Amino acid utilization 22 31
TF ZntR Zinc ion, (Zn2+); Cadmium, ion (Cd2+) Zinc resistance; Cadmium resistance 1 1
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