Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PflR regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: PflR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Formate metabolism
Effector: Formate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_1712
Regulated genes 3
Built upon 35 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -275
Score: 5.2
Sequence: ATTCAAGATTATTGATA
Locus tag: Ssed_1709
Ssed_1709 -275 5.2 ATTCAAGATTATTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pflX
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_2377 -262 5.1 TTTCAGATTTATTGATA
Shewanella sp W3-18-1 Sputw3181_1632 -262 5.1 TTTCAGATTTATTGATA
Shewanella frigidimarina NCIMB 400 Sfri_2472 -263 5.1 CATCAACTTTCTTGATA
Shewanella amazonensis SB2B Sama_1499 -242 4.7 CTTCAGAAAGATTGATA
Shewanella loihica PV-4 Shew_2389 -265 5.4 TTTCAAGTTTATTGATA
Shewanella pealeana ATCC 700345 Spea_1673 -275 5.4 ATTCAATAATATTGATA
Shewanella halifaxensis HAW-EB4 Shal_2591 -276 5.2 ATTCAAGAATATTGATA
Shewanella piezotolerans WP3 swp_1953 -275 4.8 ATTCAATAACTTTGATA
Shewanella sediminis HAW-EB3 Ssed_1709 -275 5.2 ATTCAAGATTATTGATA
Shewanella woodyi ATCC 51908 Swoo_2882 -274 5.2 ATTCAAGAATATTGATA
Position: -161
Score: 5.2
Sequence: CATCAATGTACTTGATA
Locus tag: Ssed_1710
Ssed_1710 -161 5.2 CATCAATGTACTTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Shewanella putrefaciens CN-32 Sputcn32_2376 -163 5.1 TATCAGGGTTATTGATG
Shewanella sp W3-18-1 Sputw3181_1633 -163 5.1 TATCAGGGTTATTGATG
Shewanella frigidimarina NCIMB 400 Sfri_2470 -186 5.6 AATCAATAATATTGATG
Shewanella amazonensis SB2B Sama_1500 -128 4.6 TATAAGAAAAACTGATA
Shewanella loihica PV-4 Shew_2388 -210 5.4 TATCAATTTTACTGATT
Shewanella pealeana ATCC 700345 Spea_1674 -157 5.2 TATCAAGAAGTTTGATA
Shewanella halifaxensis HAW-EB4 Shal_2590 -158 5.1 CATCAGGATATTTGATA
Shewanella piezotolerans WP3 swp_1954 -158 5.3 TATCAAAATTAATGATA
Shewanella sediminis HAW-EB3 Ssed_1710 -161 5.2 CATCAATGTACTTGATA
Shewanella woodyi ATCC 51908 Swoo_2880 -155 5.8 TATCAATTATATTGATG
Position: -277
Score: 4.9
Sequence: TATCCAGAATTTTGATA
Position: -61
Score: 5.9
Sequence: TATCAATTTTATTGATA
Locus tag: Ssed_1712
Ssed_1712 -277 4.9 TATCCAGAATTTTGATA
-61 5.9 TATCAATTTTATTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pflR
Ortholog function: Predicted transcriptional regulator for formate metabolism, LysR family
Shewanella putrefaciens CN-32 Sputcn32_2375 -58 5.9 TATCAATAAAATTGATA
Shewanella sp W3-18-1 Sputw3181_1634 -58 5.9 TATCAATAAAATTGATA
Shewanella frigidimarina NCIMB 400 Sfri_2469 -53 5.8 CATCAATTTTATTGATA
Shewanella amazonensis SB2B Sama_1501 -26 4.4 CATCAATTCCTCTGATA
Shewanella loihica PV-4 Shew_2387 -59 5.8 CATCAATTTTATTGATA
Shewanella pealeana ATCC 700345 Spea_1675 -63 5.8 CATCAATTTTATTGATA
Shewanella halifaxensis HAW-EB4 Shal_2589 -62 5.8 CATCAATTTTATTGATA
Shewanella piezotolerans WP3 swp_1955 -60 5.4 CATCAAATAAATTGATA
Shewanella sediminis HAW-EB3 Ssed_1712 -61 5.9 TATCAATTTTATTGATA
Shewanella woodyi ATCC 51908 Swoo_2879 -61 5.7 CATCAATTTAATTGATA
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