Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PsrA regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: PsrA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_2066
Regulated genes 16
Built upon 295 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -228
Score: 6.1
Sequence: AATCAAACACCCGTTTAAAT
Locus tag: Ssed_0023
Ssed_0023 -228 6.1 AATCAAACACCCGTTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: fatty oxidation complex, alpha subunit
Shewanella oneidensis MR-1 SO_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella putrefaciens CN-32 Sputcn32_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp W3-18-1 Sputw3181_0013 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp ANA-3 Shewana3_0024 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-4 Shewmr4_0018 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella sp MR-7 Shewmr7_0016 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella baltica OS155 Sbal_0021 -162 6.1 AATTAAACAGTCGTTTAAAT
Shewanella denitrificans OS217 Sden_0015 -149 6.1 AATTAAACGGCCGTTTAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0013 -161 6.1 AATTAAACGGCCGTTTAAAT
Shewanella amazonensis SB2B Sama_0032 -145 5.9 AATTAAACGATCGTTTTAAT
Shewanella loihica PV-4 Shew_0019 -161 6.1 AATTAAACAAGTGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_0018 -168 5.6 AACTAAACGGTCGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_0016 -168 5.5 AACCAAACGACCGTTTAAAT
Shewanella piezotolerans WP3 swp_0035 -161 5.5 ATTCGAACACTCGTTTAAAT
Shewanella sediminis HAW-EB3 Ssed_0023 -228 6.1 AATCAAACACCCGTTTAAAT
Shewanella woodyi ATCC 51908 Swoo_0021 -166 6.1 AATCAAACAAGTGTTTAAAT
Position: -120
Score: 5.6
Sequence: ATACAAACGGTCGTTTGAAT
Locus tag: Ssed_1445
Ssed_1445 -120 5.6 ATACAAACGGTCGTTTGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfB
Ortholog function: electron transfer flavoprotein, beta subunit
Shewanella oneidensis MR-1 SO_3145 -121 5.4 ATGCAAACAGGCGTTTGACT
Shewanella putrefaciens CN-32 Sputcn32_2511 -121 5.2 ATGCAAACAGTCGTTTGAGT
Shewanella sp W3-18-1 Sputw3181_1497 -121 5.2 ATGCAAACAGTCGTTTGAGT
Shewanella sp ANA-3 Shewana3_1405 -121 5.2 ATGCAAACAGGCGTTTGAGT
Shewanella sp MR-4 Shewmr4_1352 -121 5.2 ATGCAAACAGGCGTTTGAGT
Shewanella sp MR-7 Shewmr7_1417 -121 5.2 ATGCAAACAGGCGTTTGAGT
Shewanella baltica OS155 Sbal_2847 -121 5.4 ATGCAAACAGGCGTTTGACT
Shewanella denitrificans OS217 Sden_2539 -120 5.1 ATGCAAACGCTTGTTTAACA
Shewanella frigidimarina NCIMB 400 Sfri_2748 -122 5.4 ATGTAAACAGTCGTTTGACT
Shewanella sediminis HAW-EB3 Ssed_1445 -120 5.6 ATACAAACGGTCGTTTGAAT
Shewanella woodyi ATCC 51908 Swoo_3236 -123 5.4 ATACAAACGGGCGTTTGAAA
Position: -183
Score: 5.4
Sequence: AACCAAACAACTGTTTAAAA
Locus tag: Ssed_1628
Ssed_1628 -183 5.4 AACCAAACAACTGTTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: fatty oxidation complex, beta subunit
Shewanella oneidensis MR-1 SO_3089 -163 5.4 AAACAAACAGGTGTTTAAAA
Shewanella putrefaciens CN-32 Sputcn32_2460 -168 5.4 AAACAAACAGGTGTTTAAAA
Shewanella sp W3-18-1 Sputw3181_1548 -168 5.4 AAACAAACAGGTGTTTAAAA
Shewanella sp ANA-3 Shewana3_1460 -167 5.4 AAACAAACAGGTGTTTAAAA
Shewanella sp MR-4 Shewmr4_1407 -167 5.4 AAACAAACAGGTGTTTAAAA
Shewanella sp MR-7 Shewmr7_1472 -167 5.4 AAACAAACAGGTGTTTAAAA
Shewanella baltica OS155 Sbal_2761 -168 5.4 AAACAAACAGGTGTTTAAAA
Shewanella denitrificans OS217 Sden_1529 -141 5.4 AAATAAACGGGTGTTTAAAA
Shewanella frigidimarina NCIMB 400 Sfri_2677 -136 5.4 TTGTAAACGCCTGTTTAAAA
Shewanella amazonensis SB2B Sama_2168 -144 5.6 ATGCAAACAAGTGTTTAAAA
Shewanella loihica PV-4 Shew_2426 -166 5.4 AACCAAACAGGTGTTTAAAA
Shewanella pealeana ATCC 700345 Spea_2599 -148 5.4 AAACAAACAAGTGTTTAAAA
Shewanella halifaxensis HAW-EB4 Shal_2671 -151 5.4 AAACAAACAAGTGTTTAAAA
Shewanella piezotolerans WP3 swp_3140 -154 5.4 AAACAAACAAGTGTTTAAAA
Shewanella sediminis HAW-EB3 Ssed_1628 -183 5.4 AACCAAACAACTGTTTAAAA
Shewanella woodyi ATCC 51908 Swoo_3027 -170 5.4 AACCAAACAAGTGTTTAAAA
Position: -180
Score: 5.5
Sequence: ATTAAAACGATCGTTTGCTT
Locus tag: Ssed_1667
Ssed_1667 -180 5.5 ATTAAAACGATCGTTTGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD3
Ortholog function: long-chain-fatty-acid--CoA ligase
Shewanella sediminis HAW-EB3 Ssed_1667 -180 5.5 ATTAAAACGATCGTTTGCTT
Position: -86
Score: 5.1
Sequence: AATTAATCATTTGTTTTAAA
Locus tag: Ssed_1692
Ssed_1692 -86 5.1 AATTAATCATTTGTTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2935
Ortholog function: oxidoreductase, short-chain dehydrogenase/reductase family
Shewanella oneidensis MR-1 SO_2935 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella putrefaciens CN-32 Sputcn32_2396 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTATCA
Shewanella sp W3-18-1 Sputw3181_1612 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTATCA
Shewanella sp ANA-3 Shewana3_1528 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella sp MR-4 Shewmr4_1468 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella sp MR-7 Shewmr7_1534 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTAGCA
Shewanella baltica OS155 Sbal_2694 -86 4.5 TTTCATTCATTTGTTTGAAA
-73 4.5 TTTGAAACATGCGTTTATCA
Shewanella denitrificans OS217 Sden_2473 -73 5.3 TTTAAAACAATCGTTTACTT
Shewanella frigidimarina NCIMB 400 Sfri_2572 -86 4.6 TATTAATCATTTGTTTCAAA
-73 5.3 TTTCAAACGGTCGTTTATTT
Shewanella amazonensis SB2B Sama_2121 -73 5.1 TTTTAAACAGCTGTATGACT
Shewanella loihica PV-4 Shew_2409 -87 4.4 AATCAGTCATTTGTTTTAAA
-74 4.4 TTTTAAACATTCGTTTCAGG
Shewanella pealeana ATCC 700345 Spea_1649 -86 4.5 GATTAATCGTTTGTTTAAAA
-73 4.9 TTTAAAACAGCTGTTTATCA
Shewanella halifaxensis HAW-EB4 Shal_2614 -73 4.9 TTTAAAACAGCTGTTTATCA
Shewanella piezotolerans WP3 swp_1930 -86 5.1 AATTAATCGTTTGTTTAAAA
-73 5 TTTAAAACAGCTGTTTACCA
Shewanella sediminis HAW-EB3 Ssed_1692 -86 5.1 AATTAATCATTTGTTTTAAA
Shewanella woodyi ATCC 51908 Swoo_2905 -86 5.1 AATTAATCATTTGTTTTAAA
Position: -156
Score: 5.6
Sequence: TTTTAAACGTTTGTTTGAAA
Locus tag: Ssed_1999
Ssed_1999 -156 5.6 TTTTAAACGTTTGTTTGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: oxidoreductase, acyl-CoA dehydrogenase family
Shewanella oneidensis MR-1 SO_2536 -157 5.9 ATTTAAACAATTGTTTGAAA
Shewanella putrefaciens CN-32 Sputcn32_1791 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp W3-18-1 Sputw3181_2234 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp ANA-3 Shewana3_2323 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp MR-4 Shewmr4_2146 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella sp MR-7 Shewmr7_2223 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella baltica OS155 Sbal_2306 -156 5.9 ATTTAAACAATTGTTTGAAA
Shewanella denitrificans OS217 Sden_1764 -150 5.7 TTTTAAACAATTGTTTGAAA
Shewanella frigidimarina NCIMB 400 Sfri_1869 -150 5.9 ATTTAAACAATTGTTTGAAA
Shewanella amazonensis SB2B Sama_1870 -149 5.9 ATTTAAACATTTGTTTGAAA
Shewanella loihica PV-4 Shew_2108 -155 5.5 AGTTAAACAATTGTTTGAAA
Shewanella pealeana ATCC 700345 Spea_2393 -154 5.7 AATTAAACATTTGTTTGAAA
-121 4.8 AAATTAACGAACGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_1890 -154 6 ATTTAAACATTTGTTTAATT
Shewanella piezotolerans WP3 swp_2312 -181 5.9 ATTTAAACATTTGTTTGAAA
Shewanella sediminis HAW-EB3 Ssed_1999 -156 5.6 TTTTAAACGTTTGTTTGAAA
Shewanella woodyi ATCC 51908 Swoo_2604 -158 5.8 ATTTAAACGTTTGTTTTAAA
Position: -40
Score: 6
Sequence: ATTTAAACGGGTGTTTAAAA
Locus tag: Ssed_2066
Ssed_2066 -40 6 ATTTAAACGGGTGTTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: fatty acid degradation transcriptional regulator, TetR family
Shewanella oneidensis MR-1 SO_2493 40 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella putrefaciens CN-32 Sputcn32_1862 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella sp W3-18-1 Sputw3181_2147 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella sp ANA-3 Shewana3_2155 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella sp MR-4 Shewmr4_2050 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella sp MR-7 Shewmr7_1925 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella baltica OS155 Sbal_2245 -38 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella denitrificans OS217 Sden_2116 -24 6 ATTTAAACAGGTGTTTTAAA
Shewanella frigidimarina NCIMB 400 Sfri_1888 -36 6.3 ATTTAAACAGGTGTTTAAAT
Shewanella amazonensis SB2B Sama_1816 7 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella loihica PV-4 Shew_2052 -39 6.2 ATTTAAACACACGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_2339 -39 5.9 ATTTAAACGAGTGTTTTAAA
Shewanella halifaxensis HAW-EB4 Shal_1945 -25 5.9 ATTTAAACGAGTGTTTAAAA
Shewanella piezotolerans WP3 swp_2385 -41 6.2 ATTTAAACGAGTGTTTAAAT
Shewanella sediminis HAW-EB3 Ssed_2066 -40 6 ATTTAAACGGGTGTTTAAAA
Shewanella woodyi ATCC 51908 Swoo_2543 -41 5.9 ATTTAAACGAGTGTTTTAAA
Position: -40
Score: 6.1
Sequence: ATTAAAACAACTGTTTTAAT
Locus tag: Ssed_2292
Ssed_2292 -40 6.1 ATTAAAACAACTGTTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acdH
Ortholog function: acyl-CoA dehydrogenase family protein
Shewanella oneidensis MR-1 SO_2395 -41 6.1 ATTAAAACAACTGTTTTAAT
Shewanella putrefaciens CN-32 Sputcn32_2035 -41 6.1 ATTAAAACAACTGTTTTAAT
Shewanella sp W3-18-1 Sputw3181_1978 -41 6.1 ATTAAAACAACTGTTTTAAT
Shewanella sp ANA-3 Shewana3_1984 -41 6.2 ATTAAAACAACTGTTTAAAT
Shewanella sp MR-4 Shewmr4_1931 -41 6.2 ATTAAAACAACTGTTTAAAT
Shewanella sp MR-7 Shewmr7_2047 -41 6.2 ATTAAAACAACTGTTTAAAT
Shewanella baltica OS155 Sbal_2077 -41 6.1 ATTAAAACAACTGTTTTAAT
Shewanella denitrificans OS217 Sden_1761 -39 6.1 ATTAAAACACATGTTTGAAT
Shewanella frigidimarina NCIMB 400 Sfri_2115 -40 6.1 ATTAAAACAACTGTTTTAAT
Shewanella amazonensis SB2B Sama_1743 -40 5.9 ATTGAAACAACTGTTTAAAT
Shewanella loihica PV-4 Shew_1961 -41 6.1 ATTAAAACGACTGTTTTAAT
Shewanella pealeana ATCC 700345 Spea_2081 -40 5.7 TTTGAAACAACTGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_2054 -40 5.7 TTTGAAACAACTGTTTAAAT
Shewanella piezotolerans WP3 swp_2502 -40 5.9 ATTGAAACATCTGTTTAAAT
Shewanella sediminis HAW-EB3 Ssed_2292 -40 6.1 ATTAAAACAACTGTTTTAAT
Shewanella woodyi ATCC 51908 Swoo_2323 -40 6.1 ATTAAAACAACTGTTTTAAT
Position: -18
Score: 5.4
Sequence: TTTAAAAAGGATGTTTGAAT
Locus tag: Ssed_2310
Ssed_2310 -18 5.4 TTTAAAAAGGATGTTTGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: NADP-dependent 2,4-dienoyl-CoA reductase
Shewanella oneidensis MR-1 SO_2419 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella putrefaciens CN-32 Sputcn32_2077 -31 5 TTTAAATCACTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
Shewanella sp W3-18-1 Sputw3181_1935 -31 5 TTTAAATCACTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
Shewanella sp ANA-3 Shewana3_1965 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella sp MR-4 Shewmr4_1910 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella sp MR-7 Shewmr7_2068 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella baltica OS155 Sbal_2056 -31 5 TTTAAATCACTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
Shewanella denitrificans OS217 Sden_1900 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella frigidimarina NCIMB 400 Sfri_2144 -84 5.3 TAACAAACGAGCGTTTAAAT
-31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella amazonensis SB2B Sama_1724 -18 5.5 TTTTAAAAGGGTGTTTGAAT
Shewanella loihica PV-4 Shew_1942 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_2252 -31 5.3 ATTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella halifaxensis HAW-EB4 Shal_2030 -31 5 ATTGAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella piezotolerans WP3 swp_2472 -31 5.3 ATTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella sediminis HAW-EB3 Ssed_2310 -31 5 TTTAAATCACTTGTTTAAAA
-18 5.4 TTTAAAAAGGATGTTTGAAT
Shewanella woodyi ATCC 51908 Swoo_2300 -31 5 TTTAAATCAGTTGTTTTAAA
-18 5.4 TTTTAAAAGGATGTTTGAAT
Position: -132
Score: 5.7
Sequence: ATTAAAACGCCTGTATGAAT
Locus tag: Ssed_2523
Ssed_2523 -132 5.7 ATTAAAACGCCTGTATGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD1
Ortholog function: long-chain-fatty-acid--CoA ligase
Shewanella oneidensis MR-1 SO_2581 -136 5.5 ATTAAAACGCCCGTATGATT
Shewanella putrefaciens CN-32 Sputcn32_1761 -135 5.4 ATTAAAACGCTCGTATGATT
Shewanella sp W3-18-1 Sputw3181_2264 -135 5.4 ATTAAAACGCTCGTATGATT
Shewanella sp ANA-3 Shewana3_2386 -136 5.5 ATTAAAACGCCCGTATGATT
Shewanella sp MR-4 Shewmr4_2177 -136 5.5 ATTAAAACGCCCGTATGATT
Shewanella sp MR-7 Shewmr7_2254 -136 5.5 ATTAAAACGCCCGTATGATT
Shewanella baltica OS155 Sbal_1864 -137 5.4 ATTAAAACGCTCGTATGATT
Shewanella denitrificans OS217 Sden_1625 -169 5.6 ATTTAAACGGCCGTATGATT
Shewanella frigidimarina NCIMB 400 Sfri_1733 -145 5.2 ATTAAAACACTTGTATGACT
Shewanella amazonensis SB2B Sama_1934 -120 5.6 ATTTAAACGCCCGTATGATT
Shewanella loihica PV-4 Shew_2188 -130 5.5 ATTAAAACGCCCGTATGATT
Shewanella pealeana ATCC 700345 Spea_2448 -137 5.5 ATTTAAACGACCGTATGATT
Shewanella halifaxensis HAW-EB4 Shal_1832 -136 5.5 ATTTAAACGCTCGTATGATT
Shewanella piezotolerans WP3 swp_2289 -134 5.5 ATTTAAACGCTTGTATGATT
Shewanella sediminis HAW-EB3 Ssed_2523 -132 5.7 ATTAAAACGCCTGTATGAAT
Shewanella woodyi ATCC 51908 Swoo_2110 -134 5.7 ATTAAAACGCCTGTATGAAT
Position: -349
Score: 5.8
Sequence: ATTTAAATAAGTGTTTAAAT
Locus tag: Ssed_2818
Ssed_2818 -349 5.8 ATTTAAATAAGTGTTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: succinate dehydrogenase, cytochrome b556 subunit
Shewanella oneidensis MR-1 SO_1927 -331 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella putrefaciens CN-32 Sputcn32_2273 -331 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella sp W3-18-1 Sputw3181_1735 -331 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella sp ANA-3 Shewana3_1706 -331 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella sp MR-4 Shewmr4_1631 -331 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella sp MR-7 Shewmr7_1706 -331 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella baltica OS155 Sbal_2519 -330 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella denitrificans OS217 Sden_2187 -374 5.6 ATTTAAATAAGCGTTTAATT
Shewanella frigidimarina NCIMB 400 Sfri_2347 -324 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella amazonensis SB2B Sama_1423 -327 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella loihica PV-4 Shew_1651 -329 5.8 ATTTAAATAAGTGTTTAAAT
Shewanella pealeana ATCC 700345 Spea_1784 -351 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_2493 -350 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella piezotolerans WP3 swp_2955 -284 5.7 ATTTAAATAAGCGTTTAAAT
Shewanella sediminis HAW-EB3 Ssed_2818 -349 5.8 ATTTAAATAAGTGTTTAAAT
Shewanella woodyi ATCC 51908 Swoo_1833 -351 5.7 ATTTAAATAACCGTTTAAAT
Position: -100
Score: 5.8
Sequence: ATTTAAACACTTATTTAAAT
Locus tag: Ssed_2819
Ssed_2819 -100 5.8 ATTTAAACACTTATTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: citrate synthase
Shewanella oneidensis MR-1 SO_1926 -105 5.7 ATTTAAACGCTTATTTAAAT
Shewanella putrefaciens CN-32 Sputcn32_2274 -105 5.7 ATTTAAACGCTTATTTAAAT
Shewanella sp W3-18-1 Sputw3181_1734 -105 5.7 ATTTAAACGCTTATTTAAAT
Shewanella sp ANA-3 Shewana3_1705 -105 5.7 ATTTAAACGCTTATTTAAAT
Shewanella sp MR-4 Shewmr4_1630 -105 5.7 ATTTAAACGCTTATTTAAAT
Shewanella sp MR-7 Shewmr7_1705 -105 5.7 ATTTAAACGCTTATTTAAAT
Shewanella baltica OS155 Sbal_2520 -105 5.7 ATTTAAACGCTTATTTAAAT
Shewanella denitrificans OS217 Sden_2189 -50 5.6 AATTAAACGCTTATTTAAAT
Shewanella frigidimarina NCIMB 400 Sfri_2348 -105 5.7 ATTTAAACGCTTATTTAAAT
Shewanella amazonensis SB2B Sama_1422 -105 5.7 ATTTAAACGCTTATTTAAAT
Shewanella loihica PV-4 Shew_1650 -103 5.8 ATTTAAACACTTATTTAAAT
Shewanella pealeana ATCC 700345 Spea_1783 -101 5.7 ATTTAAACGCTTATTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_2494 -101 5.7 ATTTAAACGCTTATTTAAAT
Shewanella piezotolerans WP3 swp_2957 -101 5.7 ATTTAAACGCTTATTTAAAT
Shewanella sediminis HAW-EB3 Ssed_2819 -100 5.8 ATTTAAACACTTATTTAAAT
Shewanella woodyi ATCC 51908 Swoo_1832 -100 5.7 ATTTAAACGGTTATTTAAAT
Position: -83
Score: 5.6
Sequence: ATCTAAACGCCTGTTTGATT
Locus tag: Ssed_3695
Ssed_3695 -83 5.6 ATCTAAACGCCTGTTTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD2
Ortholog function: long-chain-fatty-acid--CoA ligase
Shewanella oneidensis MR-1 SO_3664 -63 5.6 ATCTAAACACCCGTTTGATT
Shewanella putrefaciens CN-32 Sputcn32_0970 -66 5.5 ATCTAAACATATGTTTGATT
Shewanella sp W3-18-1 Sputw3181_3197 -65 5.5 ATCTAAACATATGTTTGATT
Shewanella sp ANA-3 Shewana3_3231 -62 5.6 ATCTAAACACTCGTTTGATT
Shewanella sp MR-4 Shewmr4_0883 -62 5.6 ATCTAAACACTCGTTTGATT
Shewanella sp MR-7 Shewmr7_3139 -62 5.6 ATCTAAACACTCGTTTGATT
Shewanella baltica OS155 Sbal_0956 -66 5.4 ATCTAAACACCTGTTTAACT
Shewanella frigidimarina NCIMB 400 Sfri_3097 -55 5.5 ATCTAAACGGACGTTTGATT
Shewanella loihica PV-4 Shew_3084 -130 5.3 TGTTAAACGATTGTTTTATT
-70 5.1 GTCTAAACACCTGTTTGATT
Shewanella pealeana ATCC 700345 Spea_3322 -70 5.6 ATCTAAACGCTTGTTTGATT
Shewanella halifaxensis HAW-EB4 Shal_3395 -62 4.8 gTcTAAACAGCTGTTTgAcT
Shewanella piezotolerans WP3 swp_3965 -66 5.7 ATCTAAACACCTGTTTGATT
Shewanella sediminis HAW-EB3 Ssed_3695 -83 5.6 ATCTAAACGCCTGTTTGATT
Shewanella woodyi ATCC 51908 Swoo_3995 -95 5.7 ATCTAAACACCTGTTTGATT
Position: -260
Score: 5.9
Sequence: ATTAAAACGTGTGTTTAATT
Locus tag: Ssed_3864
Ssed_3864 -260 5.9 ATTAAAACGTGTGTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0881
Ortholog function: conserved hypothetical protein
Shewanella oneidensis MR-1 SO_0881 -78 5.9 ATTAAAACGTGTGTTTAATT
Shewanella putrefaciens CN-32 Sputcn32_3121 -77 5.9 ATTAAAACGTATGTTTAATT
Shewanella sp W3-18-1 Sputw3181_0822 -77 5.9 ATTAAAACGTATGTTTAATT
Shewanella sp ANA-3 Shewana3_3397 -78 5.9 ATTAAAACGTGTGTTTAATT
Shewanella sp MR-4 Shewmr4_0737 -78 5.9 ATTAAAACGTGTGTTTAATT
Shewanella sp MR-7 Shewmr7_3285 -78 5.9 ATTAAAACGTGTGTTTAATT
Shewanella baltica OS155 Sbal_3483 -155 5.9 ATTAAAACGTGTGTTTAATT
Shewanella frigidimarina NCIMB 400 Sfri_3287 -81 6.1 ATTTAAACGTATGTTTAAAT
Shewanella amazonensis SB2B Sama_2999 -151 5.7 AATAAAACGTATGTTTAATT
Shewanella loihica PV-4 Shew_0590 -116 6 ATTAAAACATGTGTTTAATT
Shewanella pealeana ATCC 700345 Spea_3504 -145 5.9 ATTAAAACGTGTGTTTAATT
-98 4.7 TTTTAAACTGGTCTTTTATT
Shewanella halifaxensis HAW-EB4 Shal_3598 -146 5.9 ATTAAAACGTATGTTTAATT
Shewanella piezotolerans WP3 swp_0761 -175 5.9 ATTAAAACGTGTGTTTAATT
Shewanella sediminis HAW-EB3 Ssed_3864 -260 5.9 ATTAAAACGTGTGTTTAATT
Position: -49
Score: 5.2
Sequence: ATTAAAACACCCGTTTAACG
Locus tag: Ssed_4403
Ssed_4403 -49 5.2 ATTAAAACACCCGTTTAACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: electron-transferring-flavoprotein dehydrogenase
Shewanella oneidensis MR-1 SO_4453 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella putrefaciens CN-32 Sputcn32_0388 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp W3-18-1 Sputw3181_0242 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp ANA-3 Shewana3_0273 -74 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp MR-4 Shewmr4_0272 -74 5.4 AATAAAACGCCCGTTTACAA
Shewanella sp MR-7 Shewmr7_3749 -74 5.4 AATAAAACGCCCGTTTACAA
Shewanella baltica OS155 Sbal_0283 -70 5.4 AATAAAACGCCCGTTTACAA
Shewanella amazonensis SB2B Sama_3523 -51 5.4 TATAAAACACCCGTTTACAT
Shewanella loihica PV-4 Shew_0086 -47 5.7 AATAAAACACCCGTTTCAAT
Shewanella pealeana ATCC 700345 Spea_4121 -80 5.1 ATTAAAACACCCGTTTATAG
Shewanella halifaxensis HAW-EB4 Shal_0121 -79 5.1 ATTAAAACACCCGTTTATAG
Shewanella piezotolerans WP3 swp_5010 -76 5.1 ATTAAAACACCCGTTTATAG
Shewanella sediminis HAW-EB3 Ssed_4403 -49 5.2 ATTAAAACACCCGTTTAACG
Shewanella woodyi ATCC 51908 Swoo_4794 -45 5.2 ATTAAAACACCCGTTTAACG
Position: -32
Score: 5.8
Sequence: AGTTAAACAACCGTTTGAAT
Locus tag: Ssed_4456
Ssed_4456 -32 5.8 AGTTAAACAACCGTTTGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0080
Ortholog function: thioesterase superfamily protein
Shewanella denitrificans OS217 Sden_0074 -20 5.3 TACCAAACGAGCGTTTAAAT
Shewanella frigidimarina NCIMB 400 Sfri_3968 -44 6.1 ATTTAAACAAGCGTTTAATT
Shewanella amazonensis SB2B Sama_0073 -21 5.4 TGTTAAACAATCGTTTGAAT
Shewanella loihica PV-4 Shew_3772 -35 5.4 AACTAAACACTTGTTTGAAA
Shewanella pealeana ATCC 700345 Spea_4183 -70 5.9 AGTTAAACAGCCGTTTAAAT
Shewanella halifaxensis HAW-EB4 Shal_0066 -47 5.6 AATTAAACAGCTGTTTAAAC
Shewanella piezotolerans WP3 swp_0119 -49 5.8 AATCAAACAACCGTTTGAAA
Shewanella sediminis HAW-EB3 Ssed_4456 -32 5.8 AGTTAAACAACCGTTTGAAT
Shewanella woodyi ATCC 51908 Swoo_4857 -50 5.7 AGTCAAACGCATGTTTGAAT
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