Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NikR regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: NikR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_1674
Regulated genes 2
Built upon 8 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -167
Score: 7
Sequence: GTAATACTACTTTTAGATTCGTAATAC
Locus tag: Ssed_1674
Ssed_1674 -167 7 GTAATACTACTTTTAGATTCGTAATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nikR
Ortholog function: Nickel responsive regulator NikR, CopG family
Shewanella pealeana ATCC 700345 Spea_3645 -164 7.1 GTAATACTATTTTTAGAATCGTCACAC
Shewanella halifaxensis HAW-EB4 Shal_3729 -164 6.8 GTAATACTATTTTTCGAATCGTCACAC
Shewanella sediminis HAW-EB3 Ssed_1674 -167 7 GTAATACTACTTTTAGATTCGTAATAC
Position: -56
Score: 7
Sequence: GTATTACGAATCTAAAAGTAGTATTAC
Locus tag: Ssed_1675
Ssed_1675 -56 7 GTATTACGAATCTAAAAGTAGTATTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nikA
Ortholog function: Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3)
Shewanella pealeana ATCC 700345 Spea_3644 -49 7.1 GTGTGACGATTCTAAAAATAGTATTAC
Shewanella halifaxensis HAW-EB4 Shal_3728 -49 6.8 GTGTGACGATTCGAAAAATAGTATTAC
Shewanella sediminis HAW-EB3 Ssed_1675 -56 7 GTATTACGAATCTAAAAGTAGTATTAC
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