Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PUR regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: PUR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode:
Biological process: Purine metabolism
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) No orthologous TFs found
Regulated genes 4
Built upon 60 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -62
Score: 5.4
Sequence: TAGAATAGCGCCGCATAAAA
Locus tag: Ssed_1845
Ssed_1845 -62 5.4 TAGAATAGCGCCGCATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purM
Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Shewanella oneidensis MR-1 SO_2760 -31 5.6 TAGAATACGGCCGCATAAAA
Shewanella putrefaciens CN-32 Sputcn32_1596 -52 5.6 TAGAATACCGCCGCATAAAA
Shewanella sp W3-18-1 Sputw3181_2426 -52 5.6 TAGAATACCGCCGCATAAAA
Shewanella sp ANA-3 Shewana3_2545 -52 5.6 TAGAATACCGCCGCATAAAA
Shewanella sp MR-4 Shewmr4_2380 -52 5.6 TAGAATACCGCCGCATAAAA
Shewanella sp MR-7 Shewmr7_2452 -52 5.6 TAGAATACCGCCGCATAAAA
Shewanella baltica OS155 Sbal_1735 -52 5.6 TAGAATACCGCCGCATAAAA
Shewanella denitrificans OS217 Sden_2094 -51 5.8 TAGAATGCCGCCGCATAAAA
Shewanella frigidimarina NCIMB 400 Sfri_1452 -53 5.2 TAGAATATTGCCGCATAAAA
Shewanella amazonensis SB2B Sama_2097 -53 5 TAGAATACGGCCCCAATAAA
Shewanella loihica PV-4 Shew_1513 -52 5.4 TAGAATAGCGCCGCATAAAA
Shewanella pealeana ATCC 700345 Spea_2577 -58 5 TAGAATGGCGCCGCGTAAAA
Shewanella halifaxensis HAW-EB4 Shal_1680 -59 5.4 TAGAATGACGCCGCATAAAA
Shewanella piezotolerans WP3 swp_1818 -57 5.4 TAGAATAGCGCCGCATAAAA
Shewanella sediminis HAW-EB3 Ssed_1845 -62 5.4 TAGAATAGCGCCGCATAAAA
Shewanella woodyi ATCC 51908 Swoo_2744 -53 5.6 TAGAATGGCGCCGCATAAAA
Position: -58
Score: 4.5
Sequence: TATAATCCCGCCGCAATATT
Locus tag: Ssed_3124
Ssed_3124 -58 4.5 TATAATCCCGCCGCAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: guaB
Ortholog function: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
Shewanella oneidensis MR-1 SO_3293 -59 4.5 TATAATCCCGCCGCAATATT
Shewanella putrefaciens CN-32 Sputcn32_2646 -58 4.5 TATAATCCCGCCGCAATATT
Shewanella sp W3-18-1 Sputw3181_1361 -58 4.5 TATAATCCCGCCGCAATATT
Shewanella sp ANA-3 Shewana3_1235 -59 4.5 TATAATCCCGCCGCAATATT
Shewanella sp MR-4 Shewmr4_1234 -59 4.5 TATAATCCCGCCGCAATATT
Shewanella sp MR-7 Shewmr7_1305 -59 4.5 TATAATCCCGCCGCAATATT
Shewanella baltica OS155 Sbal_2984 -58 4.5 TATAATCCCGCCGCAATATT
Shewanella denitrificans OS217 Sden_1269 -57 4.3 TATAATCTCGCCGCAATATT
Shewanella frigidimarina NCIMB 400 Sfri_1137 -55 4.3 TATAATCTCGCCGCAATATT
Shewanella amazonensis SB2B Sama_2359 -57 5.1 TATAATGCCGCCGCAATATT
Shewanella loihica PV-4 Shew_1297 -56 4.5 TATAATCCCGCCGCAATATT
Shewanella pealeana ATCC 700345 Spea_1313 -56 4.3 TATAATCTCGCCGCAATATT
Shewanella halifaxensis HAW-EB4 Shal_1376 -56 4.3 TATAATCTCGCCGCAATATT
Shewanella piezotolerans WP3 swp_1463 -56 4.3 TATAATCTCGCCGCAATATT
Shewanella sediminis HAW-EB3 Ssed_3124 -58 4.5 TATAATCCCGCCGCAATATT
Shewanella woodyi ATCC 51908 Swoo_1559 -57 4.5 TATAATCCCGCCGCAATATT
Position: -77
Score: 4.7
Sequence: TAAAATGCGGCACGATAAAA
Locus tag: Ssed_3379
Ssed_3379 -77 4.7 TAAAATGCGGCACGATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tsx
Ortholog function: nucleoside-specific channel-forming protein, Tsx
Shewanella loihica PV-4 Shew_2816 -75 4.6 TAAAATGCGGCGCCAACAAA
Shewanella pealeana ATCC 700345 Spea_3049 -80 5 TAGAATGCGACGCCATAAAA
Shewanella halifaxensis HAW-EB4 Shal_3137 -81 5.3 TAAAATGCGGCACCATAAAA
Shewanella piezotolerans WP3 swp_1228 -78 5.5 TAAAATGCGGCGCCATAAAA
Shewanella sediminis HAW-EB3 Ssed_3379 -77 4.7 TAAAATGCGGCACGATAAAA
Shewanella woodyi ATCC 51908 Swoo_3550 -79 5.5 TAAAATGCGGCGCCATAAAA
Position: -144
Score: 5.3
Sequence: TATAATTTCGCCGCATTTTG
Locus tag: Ssed_3675
Ssed_3675 -144 5.3 TATAATTTCGCCGCATTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gcvT
Ortholog function: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Shewanella oneidensis MR-1 SO_0779 -228 5.6 TATAATTTCGCCGCATTTTA
Shewanella putrefaciens CN-32 Sputcn32_3211 -84 5.6 TATAATTTCGCCGCATTTTA
Shewanella sp W3-18-1 Sputw3181_0730 -84 5.6 TATAATTTCGCCGCATTTTA
Shewanella sp ANA-3 Shewana3_3501 -228 5.6 TATAATTTCGCCGCATTTTA
Shewanella sp MR-4 Shewmr4_3331 -230 5.6 TATAATTTCGCCGCATTTTA
Shewanella sp MR-7 Shewmr7_0622 -229 5.6 TATAATTTCGCCGCATTTTA
Shewanella baltica OS155 Sbal_0617 -280 5.6 TATAATTTCGCCGCATTTTA
Shewanella frigidimarina NCIMB 400 Sfri_3151 -62 4.2 ATAATTTTGGCCGCATTTTA
Shewanella amazonensis SB2B Sama_2721 -73 5.6 TATAATTTCGCCGCATTTTA
Shewanella loihica PV-4 Shew_3064 -302 5.3 TATAATTTCGCCGCATTTTG
Shewanella pealeana ATCC 700345 Spea_3303 -164 5.6 TATAATTTCGCCGCATTTTA
Shewanella halifaxensis HAW-EB4 Shal_3375 -144 5.6 TATAATTTCGCCGCATTTTA
Shewanella piezotolerans WP3 swp_0913 -94 5.6 TATAATTTCGCCGCATTTTA
Shewanella sediminis HAW-EB3 Ssed_3675 -144 5.3 TATAATTTCGCCGCATTTTG
Shewanella woodyi ATCC 51908 Swoo_3969 -160 5.6 TATAATTTCGCCGCATTTTA
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