Propagation of NarP regulog to Shewanella sediminis HAW-EB3
| Source regulog: | NarP - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella sediminis HAW-EB3 |
| Orthologous TF(s) | Ssed_0929 |
| Regulated genes | 16 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -159
Score: 4.7 Sequence: TACCTCTAAAGTTGTA
Locus tag: Ssed_0273
|
||||
| Ssed_0273 | -159 | 4.7 | TACCTCTAAAGTTGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_3897 | ||||
| Ortholog function: Flavocytochrome c, flavin subunit | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3897 | -123 | 3.9 | TACCTACAATTGATTA |
| Shewanella pealeana ATCC 700345 | Spea_3939 | -158 | 4.6 | TACCTCCAAAGTAATA |
| Shewanella halifaxensis HAW-EB4 | Shal_0331 | -157 | 4.1 | CACTTCTAAAGTAGTA |
| Shewanella piezotolerans WP3 | swp_0220 | -226 | 4.7 | TACTCCTAAAGTAGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0273 | -159 | 4.7 | TACCTCTAAAGTTGTA |
|
Position: -230
Score: 4.1 Sequence: TAACGCTTTTTAAGTA
Locus tag: Ssed_0346
|
||||
| Ssed_0346 | -230 | 4.1 | TAACGCTTTTTAAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3059 | ||||
| Ortholog function: Predicted transcriptional activator | ||||
| Shewanella oneidensis MR-1 | SO3059 | -104 | 3.9 | CACCTAAAAGGAGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_2433 | -104 | 4.2 | CACCTAAAAAGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_1575 | -104 | 4.2 | CACCTAAAAAGAGGTA |
| Shewanella sp ANA-3 | Shewana3_1488 | -104 | 4.2 | CACCTAAAAAGAGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0346 | -230 | 4.1 | TAACGCTTTTTAAGTA |
|
Position: -109
Score: 4.7 Sequence: TATCCCTTTATGGGTA
Locus tag: Ssed_0742
|
||||
| Ssed_0742 | -109 | 4.7 | TATCCCTTTATGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Spea_3600 | ||||
| Ortholog function: Predicted deca-heme c-type cytochrome | ||||
| Shewanella pealeana ATCC 700345 | Spea_3600 | -109 | 4.6 | TATCTCTTTAGTAGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3689 | -109 | 4.7 | TATCTCTTTAGTGGTA |
| Shewanella piezotolerans WP3 | swp_0694 | -110 | 4.6 | TATCTCTTTAGTAGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0742 | -109 | 4.7 | TATCCCTTTATGGGTA |
|
Position: -161
Score: 4.9 Sequence: TACCCCTAAGGGGGTA
Locus tag: Ssed_0930
|
||||
| Ssed_0930 | -161 | 4.9 | TACCCCTAAGGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narQ | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) | ||||
| Shewanella oneidensis MR-1 | SO3981 | -199 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0684 | -162 | 5.2 | TACCTCTTAGGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_3487 | -162 | 5.2 | TACCTCTTAGGAGGTA |
| Shewanella sp ANA-3 | Shewana3_0657 | -163 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella sp MR-4 | Shewmr4_0658 | -164 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella sp MR-7 | Shewmr7_3364 | -164 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella baltica OS155 | Sbal_0793 | -146 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0621 | -188 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella amazonensis SB2B | Sama_0647 | -160 | 4.9 | TACCCATTAAGTGGTA |
| Shewanella loihica PV-4 | Shew_0843 | -161 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0830 | -157 | 5 | TACCTCCTATGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0885 | -159 | 4.7 | TACCTCCAACGAGGTA |
| Shewanella piezotolerans WP3 | swp_3960 | -263 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0930 | -161 | 4.9 | TACCCCTAAGGGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_0971 | -160 | 5.2 | TACCCCTTATGAGGTA |
|
Position: -100
Score: 5 Sequence: TACCCCCTTAGGGGTA
Locus tag: Ssed_0931
|
||||
| Ssed_0931 | -100 | 5 | TACCCCCTTAGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) | ||||
| Shewanella oneidensis MR-1 | SO3980 | -95 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0685 | -95 | 5.2 | TACCTCCTAAGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_3486 | -95 | 5.2 | TACCTCCTAAGAGGTA |
| Shewanella sp ANA-3 | Shewana3_0658 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella sp MR-4 | Shewmr4_0659 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella sp MR-7 | Shewmr7_3363 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella baltica OS155 | Sbal_0794 | -95 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0622 | -111 | 5 | TACCCCATAAGGGGTA |
| Shewanella amazonensis SB2B | Sama_0648 | -101 | 5 | TACCACTTAATGGGTA |
| Shewanella loihica PV-4 | Shew_0844 | -102 | 5 | TACCCCATAAGGGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0831 | -101 | 4.9 | TACCTCATAGGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0886 | -98 | 4.7 | TACCTCGTTGGAGGTA |
| Shewanella piezotolerans WP3 | swp_3958 | -96 | 5 | TACCCCATAAGGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0931 | -100 | 5 | TACCCCCTTAGGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_0972 | -100 | 5 | TACCTCATAAGGGGTA |
|
Position: -133
Score: 4 Sequence: TATCTATAACTGGGTA
Locus tag: Ssed_1469
|
||||
| Ssed_1469 | -133 | 4 | TATCTATAACTGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Shewanella oneidensis MR-1 | SO1673 | -135 | 4.6 | TACCTAAAAATAAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1392 | -242 | 4.1 | TAACCCTTACTAGGTG |
| -132 | 4.6 | TACCTATAAGTGGGTA | ||
| Shewanella sp W3-18-1 | Sputw3181_2709 | -242 | 4.2 | TAACCCTTATTAGGTG |
| -132 | 4.6 | TACCTATAAGTGGGTA | ||
| Shewanella sp ANA-3 | Shewana3_2775 | -132 | 4.8 | TACCTCAAAATAAGTA |
| Shewanella sp MR-4 | Shewmr4_2601 | -132 | 4.8 | TACCTCAAAATAAGTA |
| Shewanella sp MR-7 | Shewmr7_2668 | -132 | 4.8 | TACCTCAAAATAAGTA |
| Shewanella baltica OS155 | Sbal_1490 | -132 | 4.5 | TACCTATAAGTGAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1334 | -132 | 5 | TACCTCTATAGTAGTA |
| Shewanella amazonensis SB2B | Sama_1371 | -134 | 4.5 | TACCCCAAAGTGGGTA |
| Shewanella pealeana ATCC 700345 | Spea_2787 | -133 | 3.9 | TATCTCGAAGTGGGTA |
| Shewanella piezotolerans WP3 | swp_3395 | -136 | 4.6 | TATCTCTAAATGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_1469 | -133 | 4 | TATCTATAACTGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_3207 | -133 | 4.1 | TATCTATAAGTGGGTA |
|
Position: -205
Score: 5 Sequence: TACCCCTTTATAAATA
Locus tag: Ssed_1525
|
||||
| Ssed_1525 | -205 | 5 | TACCCCTTTATAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrC | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC | ||||
| Shewanella oneidensis MR-1 | SO1778 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella putrefaciens CN-32 | Sputcn32_1478 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp W3-18-1 | Sputw3181_2623 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp ANA-3 | Shewana3_2676 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp MR-4 | Shewmr4_2510 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp MR-7 | Shewmr7_2578 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella baltica OS155 | Sbal_1589 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2637 | -178 | 4.9 | TACCTCTTTATTAATA |
| Shewanella amazonensis SB2B | Sama_1208 | -192 | 4.9 | TACCCCTTTTGAAATA |
| -133 | 5 | TACCCCCTATGAGGTA | ||
| Shewanella loihica PV-4 | Shew_2525 | -193 | 5.2 | TACCCCTTTAGAAATA |
| Shewanella pealeana ATCC 700345 | Spea_2698 | -195 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella halifaxensis HAW-EB4 | Shal_2784 | -194 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella piezotolerans WP3 | swp_3278 | -193 | 5.1 | TACCTCTTTATAAATA |
| Shewanella sediminis HAW-EB3 | Ssed_1525 | -205 | 5 | TACCCCTTTATAAATA |
| Shewanella woodyi ATCC 51908 | Swoo_3125 | -218 | 5 | TACCCCTTTATAAATA |
|
Position: -209
Score: 5.1 Sequence: TACCCCTAAAGAAATA
Locus tag: Ssed_1526
|
||||
| Ssed_1526 | -209 | 5.1 | TACCCCTAAAGAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omcA | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA | ||||
| Shewanella sediminis HAW-EB3 | Ssed_1526 | -209 | 5.1 | TACCCCTAAAGAAATA |
|
Position: -218
Score: 4.4 Sequence: TACCAAGTTAGAGGTA
Locus tag: Ssed_1912
|
||||
| Ssed_1912 | -218 | 4.4 | TACCAAGTTAGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napD2 | ||||
| Ortholog function: Periplasmic nitrate reductase component NapD | ||||
| Shewanella sediminis HAW-EB3 | Ssed_1912 | -218 | 4.4 | TACCAAGTTAGAGGTA |
| -192 | 4.1 | TATCTCCTTACGAGTA | ||
|
Position: -235
Score: 4.1 Sequence: TAGTTCTTTAGTAGTA
Locus tag: Ssed_1953
|
||||
| Ssed_1953 | -235 | 4.1 | TAGTTCTTTAGTAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_0176 | -237 | 3.9 | TAATACCTAGGTGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_1953 | -235 | 4.1 | TAGTTCTTTAGTAGTA |
|
Position: -176
Score: 4.6 Sequence: TACTACTTTAGGAGTA
Position: -162
Score: 5 Sequence: TACCTCCTTATAAGTA
Locus tag: Ssed_3185
|
||||
| Ssed_3185 | -176 | 4.6 | TACTACTTTAGGAGTA | |
| -162 | 5 | TACCTCCTTATAAGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Shew_2655 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella loihica PV-4 | Shew_2655 | -166 | 5 | TACCACTTTAGAGATA |
| -152 | 4.3 | TACCTCTAATTCAGTA | ||
| Shewanella pealeana ATCC 700345 | Spea_3233 | -165 | 4.5 | TACCTACTTGTAGGTA |
| -151 | 4.4 | TATCCCTAAATTAGTA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3305 | -165 | 4.3 | TACCTATTTGTGTGTA |
| -151 | 4.6 | TACCTCTAAATCGGTA | ||
| Shewanella piezotolerans WP3 | swp_1107 | -165 | 5 | TACCCATTTATAGGTA |
| -151 | 4.9 | TACCTCTAAATTAGTA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3185 | -176 | 4.6 | TACTACTTTAGGAGTA |
| -162 | 5 | TACCTCCTTATAAGTA | ||
| Shewanella woodyi ATCC 51908 | Swoo_3303 | -164 | 5 | TACCACTTTATAGGTA |
| -150 | 4.8 | TACCACTTAATTAGTA | ||
|
Position: -173
Score: 5.2 Sequence: TACCTCTTTAGGGATA
Locus tag: Ssed_3744
|
||||
| Ssed_3744 | -173 | 5.2 | TACCTCTTTAGGGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: swp_0614 | ||||
| Ortholog function: Cytochrome c552 precursor (EC 1.7.2.2) | ||||
| Shewanella piezotolerans WP3 | swp_0614 | -293 | 5.2 | TACCTCTTAATGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_3744 | -173 | 5.2 | TACCTCTTTAGGGATA |
|
Position: -132
Score: 4.7 Sequence: TACCTCTTGTTGGGTA
Locus tag: Ssed_3956
|
||||
| Ssed_3956 | -132 | 4.7 | TACCTCTTGTTGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napD | ||||
| Ortholog function: Periplasmic nitrate reductase component NapD | ||||
| Shewanella oneidensis MR-1 | SO0849 | -119 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3147 | -116 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_0796 | -116 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp ANA-3 | Shewana3_3429 | -118 | 4.8 | TACCTCTTGCGAGGTA |
| Shewanella sp MR-4 | Shewmr4_0705 | -118 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp MR-7 | Shewmr7_3317 | -118 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella baltica OS155 | Sbal_3510 | -119 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella amazonensis SB2B | Sama_2982 | -105 | 4.8 | TACCTCCTAGTGGGTA |
| Shewanella loihica PV-4 | Shew_3205 | -123 | 4.9 | TACCTCTCAAGAGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0624 | -118 | 4.9 | TACCCCTTGTGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0716 | -119 | 4.7 | TACCCCTTGCGAGGTA |
| Shewanella piezotolerans WP3 | swp_4456 | -111 | 4.9 | TACCCCTTGTGAGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_3956 | -132 | 4.7 | TACCTCTTGTTGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_4109 | -124 | 5 | TACCCCTTACTAGGTA |
|
Position: -263
Score: 4.1 Sequence: TACTTCGTTCTAGGTA
Locus tag: Ssed_4009
|
||||
| Ssed_4009 | -263 | 4.1 | TACTTCGTTCTAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp35 | ||||
| Ortholog function: Outer membrane porin, predicted | ||||
| Shewanella oneidensis MR-1 | SO3896 | -255 | 5.2 | TACCTCTTTAGTGGTA |
| Shewanella sp ANA-3 | Shewana3_0733 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella sp MR-4 | Shewmr4_3228 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella sp MR-7 | Shewmr7_0761 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella baltica OS155 | Sbal_3570 | -256 | 4.9 | TACCACTTAAGTAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0503 | -243 | 4.3 | CATCCCTAAAGAGGTA |
| Shewanella loihica PV-4 | Shew_3260 | -261 | 4.9 | TACCCCTTTGGGAGTA |
| Shewanella pealeana ATCC 700345 | Spea_0589 | -260 | 4.6 | CACCTCTTTATAGATA |
| Shewanella halifaxensis HAW-EB4 | Shal_0676 | -260 | 4.8 | TACTCCTTTAGGGATA |
| Shewanella piezotolerans WP3 | swp_4514 | -260 | 5.1 | TACCCCTTTAGGGATA |
| Shewanella sediminis HAW-EB3 | Ssed_4009 | -263 | 4.1 | TACTTCGTTCTAGGTA |