Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: NarP - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_0929
Regulated genes 16
Built upon 249 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -159
Score: 4.7
Sequence: TACCTCTAAAGTTGTA
Locus tag: Ssed_0273
Ssed_0273 -159 4.7 TACCTCTAAAGTTGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_3897
Ortholog function: Flavocytochrome c, flavin subunit
Shewanella frigidimarina NCIMB 400 Sfri_3897 -123 3.9 TACCTACAATTGATTA
Shewanella pealeana ATCC 700345 Spea_3939 -158 4.6 TACCTCCAAAGTAATA
Shewanella halifaxensis HAW-EB4 Shal_0331 -157 4.1 CACTTCTAAAGTAGTA
Shewanella piezotolerans WP3 swp_0220 -226 4.7 TACTCCTAAAGTAGTA
Shewanella sediminis HAW-EB3 Ssed_0273 -159 4.7 TACCTCTAAAGTTGTA
Position: -230
Score: 4.1
Sequence: TAACGCTTTTTAAGTA
Locus tag: Ssed_0346
Ssed_0346 -230 4.1 TAACGCTTTTTAAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3059
Ortholog function: Predicted transcriptional activator
Shewanella oneidensis MR-1 SO3059 -104 3.9 CACCTAAAAGGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_2433 -104 4.2 CACCTAAAAAGAGGTA
Shewanella sp W3-18-1 Sputw3181_1575 -104 4.2 CACCTAAAAAGAGGTA
Shewanella sp ANA-3 Shewana3_1488 -104 4.2 CACCTAAAAAGAGGTA
Shewanella sediminis HAW-EB3 Ssed_0346 -230 4.1 TAACGCTTTTTAAGTA
Position: -109
Score: 4.7
Sequence: TATCCCTTTATGGGTA
Locus tag: Ssed_0742
Ssed_0742 -109 4.7 TATCCCTTTATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3600
Ortholog function: Predicted deca-heme c-type cytochrome
Shewanella pealeana ATCC 700345 Spea_3600 -109 4.6 TATCTCTTTAGTAGTA
Shewanella halifaxensis HAW-EB4 Shal_3689 -109 4.7 TATCTCTTTAGTGGTA
Shewanella piezotolerans WP3 swp_0694 -110 4.6 TATCTCTTTAGTAGTA
Shewanella sediminis HAW-EB3 Ssed_0742 -109 4.7 TATCCCTTTATGGGTA
Position: -161
Score: 4.9
Sequence: TACCCCTAAGGGGGTA
Locus tag: Ssed_0930
Ssed_0930 -161 4.9 TACCCCTAAGGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewanella oneidensis MR-1 SO3981 -199 5.1 TACCTCTTAGGGGGTA
Shewanella putrefaciens CN-32 Sputcn32_0684 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp W3-18-1 Sputw3181_3487 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp ANA-3 Shewana3_0657 -163 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-4 Shewmr4_0658 -164 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-7 Shewmr7_3364 -164 5.1 TACCTCTTAGGGGGTA
Shewanella baltica OS155 Sbal_0793 -146 5.1 TACCTCTTAGGGGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0621 -188 5.1 TACCCCTTATGGGGTA
Shewanella amazonensis SB2B Sama_0647 -160 4.9 TACCCATTAAGTGGTA
Shewanella loihica PV-4 Shew_0843 -161 5.1 TACCCCTTATGGGGTA
Shewanella pealeana ATCC 700345 Spea_0830 -157 5 TACCTCCTATGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0885 -159 4.7 TACCTCCAACGAGGTA
Shewanella piezotolerans WP3 swp_3960 -263 5.1 TACCCCTTATGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0930 -161 4.9 TACCCCTAAGGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0971 -160 5.2 TACCCCTTATGAGGTA
Position: -100
Score: 5
Sequence: TACCCCCTTAGGGGTA
Locus tag: Ssed_0931
Ssed_0931 -100 5 TACCCCCTTAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewanella oneidensis MR-1 SO3980 -95 5.2 TACCCCCTAAGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_0685 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp W3-18-1 Sputw3181_3486 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp ANA-3 Shewana3_0658 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-4 Shewmr4_0659 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-7 Shewmr7_3363 -77 5.2 TACCCCCTAAGAGGTA
Shewanella baltica OS155 Sbal_0794 -95 5.2 TACCCCCTAAGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0622 -111 5 TACCCCATAAGGGGTA
Shewanella amazonensis SB2B Sama_0648 -101 5 TACCACTTAATGGGTA
Shewanella loihica PV-4 Shew_0844 -102 5 TACCCCATAAGGGGTA
Shewanella pealeana ATCC 700345 Spea_0831 -101 4.9 TACCTCATAGGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0886 -98 4.7 TACCTCGTTGGAGGTA
Shewanella piezotolerans WP3 swp_3958 -96 5 TACCCCATAAGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0931 -100 5 TACCCCCTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0972 -100 5 TACCTCATAAGGGGTA
Position: -133
Score: 4
Sequence: TATCTATAACTGGGTA
Locus tag: Ssed_1469
Ssed_1469 -133 4 TATCTATAACTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella oneidensis MR-1 SO1673 -135 4.6 TACCTAAAAATAAGTA
Shewanella putrefaciens CN-32 Sputcn32_1392 -242 4.1 TAACCCTTACTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp W3-18-1 Sputw3181_2709 -242 4.2 TAACCCTTATTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp ANA-3 Shewana3_2775 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-4 Shewmr4_2601 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-7 Shewmr7_2668 -132 4.8 TACCTCAAAATAAGTA
Shewanella baltica OS155 Sbal_1490 -132 4.5 TACCTATAAGTGAGTA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -132 5 TACCTCTATAGTAGTA
Shewanella amazonensis SB2B Sama_1371 -134 4.5 TACCCCAAAGTGGGTA
Shewanella pealeana ATCC 700345 Spea_2787 -133 3.9 TATCTCGAAGTGGGTA
Shewanella piezotolerans WP3 swp_3395 -136 4.6 TATCTCTAAATGGGTA
Shewanella sediminis HAW-EB3 Ssed_1469 -133 4 TATCTATAACTGGGTA
Shewanella woodyi ATCC 51908 Swoo_3207 -133 4.1 TATCTATAAGTGGGTA
Position: -205
Score: 5
Sequence: TACCCCTTTATAAATA
Locus tag: Ssed_1525
Ssed_1525 -205 5 TACCCCTTTATAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -204 5.2 TACCTCTTTAGAAATA
Shewanella putrefaciens CN-32 Sputcn32_1478 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp W3-18-1 Sputw3181_2623 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp ANA-3 Shewana3_2676 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-4 Shewmr4_2510 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-7 Shewmr7_2578 -203 5.2 TACCTCTTTAGAAATA
Shewanella baltica OS155 Sbal_1589 -204 5.2 TACCTCTTTAGAAATA
Shewanella frigidimarina NCIMB 400 Sfri_2637 -178 4.9 TACCTCTTTATTAATA
Shewanella amazonensis SB2B Sama_1208 -192 4.9 TACCCCTTTTGAAATA
-133 5 TACCCCCTATGAGGTA
Shewanella loihica PV-4 Shew_2525 -193 5.2 TACCCCTTTAGAAATA
Shewanella pealeana ATCC 700345 Spea_2698 -195 5.2 TACCTCTTTAGAAATA
Shewanella halifaxensis HAW-EB4 Shal_2784 -194 5.2 TACCTCTTTAGAAATA
Shewanella piezotolerans WP3 swp_3278 -193 5.1 TACCTCTTTATAAATA
Shewanella sediminis HAW-EB3 Ssed_1525 -205 5 TACCCCTTTATAAATA
Shewanella woodyi ATCC 51908 Swoo_3125 -218 5 TACCCCTTTATAAATA
Position: -209
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Ssed_1526
Ssed_1526 -209 5.1 TACCCCTAAAGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omcA
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shewanella sediminis HAW-EB3 Ssed_1526 -209 5.1 TACCCCTAAAGAAATA
Position: -218
Score: 4.4
Sequence: TACCAAGTTAGAGGTA
Locus tag: Ssed_1912
Ssed_1912 -218 4.4 TACCAAGTTAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD2
Ortholog function: Periplasmic nitrate reductase component NapD
Shewanella sediminis HAW-EB3 Ssed_1912 -218 4.4 TACCAAGTTAGAGGTA
-192 4.1 TATCTCCTTACGAGTA
Position: -235
Score: 4.1
Sequence: TAGTTCTTTAGTAGTA
Locus tag: Ssed_1953
Ssed_1953 -235 4.1 TAGTTCTTTAGTAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Shewanella halifaxensis HAW-EB4 Shal_0176 -237 3.9 TAATACCTAGGTGGTA
Shewanella sediminis HAW-EB3 Ssed_1953 -235 4.1 TAGTTCTTTAGTAGTA
Position: -176
Score: 4.6
Sequence: TACTACTTTAGGAGTA
Position: -162
Score: 5
Sequence: TACCTCCTTATAAGTA
Locus tag: Ssed_3185
Ssed_3185 -176 4.6 TACTACTTTAGGAGTA
-162 5 TACCTCCTTATAAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_2655
Ortholog function: Conserved hypothetical protein
Shewanella loihica PV-4 Shew_2655 -166 5 TACCACTTTAGAGATA
-152 4.3 TACCTCTAATTCAGTA
Shewanella pealeana ATCC 700345 Spea_3233 -165 4.5 TACCTACTTGTAGGTA
-151 4.4 TATCCCTAAATTAGTA
Shewanella halifaxensis HAW-EB4 Shal_3305 -165 4.3 TACCTATTTGTGTGTA
-151 4.6 TACCTCTAAATCGGTA
Shewanella piezotolerans WP3 swp_1107 -165 5 TACCCATTTATAGGTA
-151 4.9 TACCTCTAAATTAGTA
Shewanella sediminis HAW-EB3 Ssed_3185 -176 4.6 TACTACTTTAGGAGTA
-162 5 TACCTCCTTATAAGTA
Shewanella woodyi ATCC 51908 Swoo_3303 -164 5 TACCACTTTATAGGTA
-150 4.8 TACCACTTAATTAGTA
Position: -173
Score: 5.2
Sequence: TACCTCTTTAGGGATA
Locus tag: Ssed_3744
Ssed_3744 -173 5.2 TACCTCTTTAGGGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_0614
Ortholog function: Cytochrome c552 precursor (EC 1.7.2.2)
Shewanella piezotolerans WP3 swp_0614 -293 5.2 TACCTCTTAATGGGTA
Shewanella sediminis HAW-EB3 Ssed_3744 -173 5.2 TACCTCTTTAGGGATA
Position: -132
Score: 4.7
Sequence: TACCTCTTGTTGGGTA
Locus tag: Ssed_3956
Ssed_3956 -132 4.7 TACCTCTTGTTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: Periplasmic nitrate reductase component NapD
Shewanella oneidensis MR-1 SO0849 -119 4.9 TACCTCTTGTGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_3147 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp W3-18-1 Sputw3181_0796 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp ANA-3 Shewana3_3429 -118 4.8 TACCTCTTGCGAGGTA
Shewanella sp MR-4 Shewmr4_0705 -118 4.9 TACCTCTTGTGAGGTA
Shewanella sp MR-7 Shewmr7_3317 -118 4.9 TACCTCTTGTGAGGTA
Shewanella baltica OS155 Sbal_3510 -119 4.9 TACCTCTTGTGAGGTA
Shewanella amazonensis SB2B Sama_2982 -105 4.8 TACCTCCTAGTGGGTA
Shewanella loihica PV-4 Shew_3205 -123 4.9 TACCTCTCAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_0624 -118 4.9 TACCCCTTGTGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0716 -119 4.7 TACCCCTTGCGAGGTA
Shewanella piezotolerans WP3 swp_4456 -111 4.9 TACCCCTTGTGAGGTA
Shewanella sediminis HAW-EB3 Ssed_3956 -132 4.7 TACCTCTTGTTGGGTA
Shewanella woodyi ATCC 51908 Swoo_4109 -124 5 TACCCCTTACTAGGTA
Position: -263
Score: 4.1
Sequence: TACTTCGTTCTAGGTA
Locus tag: Ssed_4009
Ssed_4009 -263 4.1 TACTTCGTTCTAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp35
Ortholog function: Outer membrane porin, predicted
Shewanella oneidensis MR-1 SO3896 -255 5.2 TACCTCTTTAGTGGTA
Shewanella sp ANA-3 Shewana3_0733 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-4 Shewmr4_3228 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-7 Shewmr7_0761 -255 5.1 TACCTCTTTAGTAGTA
Shewanella baltica OS155 Sbal_3570 -256 4.9 TACCACTTAAGTAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0503 -243 4.3 CATCCCTAAAGAGGTA
Shewanella loihica PV-4 Shew_3260 -261 4.9 TACCCCTTTGGGAGTA
Shewanella pealeana ATCC 700345 Spea_0589 -260 4.6 CACCTCTTTATAGATA
Shewanella halifaxensis HAW-EB4 Shal_0676 -260 4.8 TACTCCTTTAGGGATA
Shewanella piezotolerans WP3 swp_4514 -260 5.1 TACCCCTTTAGGGATA
Shewanella sediminis HAW-EB3 Ssed_4009 -263 4.1 TACTTCGTTCTAGGTA
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