Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: Fur - Shewanellaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_2810
Regulated genes 23
Built upon 505 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -97
Score: 5.5
Sequence: AAATGGGAAGTGTTATCATTT
Locus tag: Ssed_0144
Ssed_0144 -97 5.5 AAATGGGAAGTGTTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4700
Ortholog function: Hypothetical outer membrane protein
Shewanella oneidensis MR-1 SO4700 -86 5.3 AAATCAAATCCATTCTCATTA
Shewanella sp ANA-3 Shewana3_4052 -86 4.8 AAATCGAATCCATTCTCATTA
Shewanella sp MR-4 Shewmr4_3843 -27 5.3 AAATCAAATCCATTCTCATTA
Shewanella sp MR-7 Shewmr7_3936 -27 5.3 AAATCAAATCCATTCTCATTA
Shewanella baltica OS155 Sbal_0123 -86 4.5 AAATCGAATCAATTCGCATTA
Shewanella denitrificans OS217 Sden_3594 -123 4.7 AAATAAGACTGGTTTGTATTT
Shewanella frigidimarina NCIMB 400 Sfri_3875 -80 5.3 AAACGAGACTGATTATCATTT
Shewanella loihica PV-4 Shew_3658 -83 5.3 AAATGCAACCAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_4066 7 5 AAATACGAGCTATTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_0192 -87 4.4 AAATACGTCCCATTATCATTT
Shewanella piezotolerans WP3 swp_4927 -86 5 AAATACAACCGATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_0144 -97 5.5 AAATGGGAAGTGTTATCATTT
Shewanella woodyi ATCC 51908 Swoo_0123 -85 5.2 AAATACAAAGCGTTATCATTT
Position: -54
Score: 5.8
Sequence: CATTGAGAATCATTTTCATTT
Locus tag: Ssed_0782
Ssed_0782 -54 5.8 CATTGAGAATCATTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: Bacterioferritin-associated ferredoxin
Shewanella loihica PV-4 Shew_0552 -57 5.4 CAGTGAGAATCGTTTTCATTT
Shewanella sediminis HAW-EB3 Ssed_0782 -54 5.8 CATTGAGAATCATTTTCATTT
Shewanella woodyi ATCC 51908 Swoo_4187 -56 5.6 CATTGAGAATCGTTTTCATTT
Position: -58
Score: 5.7
Sequence: GATTGATAATAATTATCATTA
Locus tag: Ssed_0945
Ssed_0945 -58 5.7 GATTGATAATAATTATCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbpA
Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Shewanella oneidensis MR-1 SO0744 -76 5.7 AACTGATAACTATTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_3227 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp W3-18-1 Sputw3181_0714 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp ANA-3 Shewana3_3517 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-4 Shewmr4_3347 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-7 Shewmr7_0606 -76 5.7 AACTGATAACTATTATCATTA
Shewanella baltica OS155 Sbal_0812 -76 5.4 AACTGATAAGCATTATCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0636 -67 5.9 AATTGATAACCATTATCAATT
Shewanella amazonensis SB2B Sama_0666 -57 5.8 TAGTGATAATAATTATCATTA
Shewanella loihica PV-4 Shew_0861 -41 6.1 AATTGATAATTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_0844 -60 5.8 AATTGAGAATTATTATCAGTT
Shewanella halifaxensis HAW-EB4 Shal_0897 -64 5.4 AATTGAGAATTATTATCAGTC
Shewanella piezotolerans WP3 swp_4107 -60 5.2 AATTGAGAACTATTATCAGCA
Shewanella sediminis HAW-EB3 Ssed_0945 -58 5.7 GATTGATAATAATTATCATTA
Shewanella woodyi ATCC 51908 Swoo_0996 -57 5.4 AATTGATAACTATTATCATCG
Position: -154
Score: 5.3
Sequence: GAATTATAATCATTCTTATTT
Locus tag: Ssed_0946
Ssed_0946 -154 5.3 GAATTATAATCATTCTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbpB
Ortholog function: ABC iron(III) transporter, inner membrane subunit, FbpB
Shewanella oneidensis MR-1 SO0743 -76 5.7 AACTGATAACTATTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_3226 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp W3-18-1 Sputw3181_0715 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp ANA-3 Shewana3_3516 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-4 Shewmr4_3346 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-7 Shewmr7_0607 -76 5.7 AACTGATAACTATTATCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0637 -67 5.9 AATTGATAACCATTATCAATT
Shewanella amazonensis SB2B Sama_0667 -57 5.8 TAGTGATAATAATTATCATTA
Shewanella loihica PV-4 Shew_0862 -41 6.1 AATTGATAATTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_0845 -60 5.8 AATTGAGAATTATTATCAGTT
Shewanella halifaxensis HAW-EB4 Shal_0898 -64 5.4 AATTGAGAATTATTATCAGTC
Shewanella piezotolerans WP3 swp_4106 -60 5.2 AATTGAGAACTATTATCAGCA
Shewanella sediminis HAW-EB3 Ssed_0946 -154 5.3 GAATTATAATCATTCTTATTT
Shewanella woodyi ATCC 51908 Swoo_0997 -79 5.5 AATTAATAATCGTTTTTATTT
Position: -41
Score: 5.7
Sequence: TAATGATAATGATTATCAATC
Locus tag: Ssed_1239
Ssed_1239 -41 5.7 TAATGATAATGATTATCAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3344
Ortholog function: Hypothetical inner membrane protein
Shewanella oneidensis MR-1 SO3344 -44 6 AAATGATAATGATTATCAGTT
Shewanella putrefaciens CN-32 Sputcn32_2679 -40 6 AGATGATAATGATTATCAATT
Shewanella sp W3-18-1 Sputw3181_1332 -40 6 AGATGATAATGATTATCAATT
Shewanella sp ANA-3 Shewana3_1202 -44 6.1 AAATGATAATGATTATCACTT
Shewanella sp MR-4 Shewmr4_1201 -44 6.1 AAATGATAATGATTATCACTT
Shewanella sp MR-7 Shewmr7_1272 -44 6.1 AAATGATAATGATTATCACTT
Shewanella baltica OS155 Sbal_3017 -41 6 AGATGATAATGATTATCAATT
Shewanella loihica PV-4 Shew_1146 -43 6.3 AAATGATAATGATTATCAATT
Shewanella pealeana ATCC 700345 Spea_1134 -33 6.1 TAATGATAATGATTATCAATT
Shewanella halifaxensis HAW-EB4 Shal_1179 -44 6.1 AATTGATAATGATTATCAATT
Shewanella piezotolerans WP3 swp_3598 -43 6.1 TAATGATAATGATTATCAATT
Shewanella sediminis HAW-EB3 Ssed_1239 -41 5.7 TAATGATAATGATTATCAATC
Shewanella woodyi ATCC 51908 Swoo_1339 -42 6 AAATGATAATGATTATCAGTT
Position: -98
Score: 5.1
Sequence: GAATGAAAACGGTTATCACCT
Locus tag: Ssed_1345
Ssed_1345 -98 5.1 GAATGAAAACGGTTATCACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3406
Ortholog function: Conserved hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_2727 -196 5.5 AAATGATATCGTTTATCATTT
Shewanella sp W3-18-1 Sputw3181_1285 -196 5.5 AAATGATATCGTTTATCATTT
Shewanella sediminis HAW-EB3 Ssed_1345 -98 5.1 GAATGAAAACGGTTATCACCT
Position: -51
Score: 4.9
Sequence: AATCGAGAATGGTTATCATCC
Locus tag: Ssed_1496
Ssed_1496 -51 4.9 AATCGAGAATGGTTATCATCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4423.1
Ortholog function: TonB-dependent ferric achromobactin receptor
Shewanella oneidensis MR-1 SO4423.1 -98 5.4 TAATAAAAATCGTTACCATTT
Shewanella putrefaciens CN-32 Sputcn32_0401 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp W3-18-1 Sputw3181_0255 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp ANA-3 Shewana3_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-4 Shewmr4_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-7 Shewmr7_3733 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella baltica OS155 Sbal_0298 -100 5.6 GAATAAAAATCGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0392 -54 5.9 TAATGATAATGAATATCATTA
Shewanella amazonensis SB2B Sama_1394 -54 5 CATTGAGAGTAATTATCATTA
Shewanella loihica PV-4 Shew_1688 -72 4.9 ATATGATAATCTATATCATTC
Shewanella pealeana ATCC 700345 Spea_0977 -108 5.3 AAACACTAATCATTATCATTT
Shewanella piezotolerans WP3 swp_1134 -108 5.2 CAACAATAATCATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_1496 -51 4.9 AATCGAGAATGGTTATCATCC
Shewanella woodyi ATCC 51908 Swoo_0587 -62 5.9 TAATGGGAATAATTATCATTT
Position: -67
Score: 5.3
Sequence: AAATGAAAATCATTTGTAGTT
Locus tag: Ssed_1517
Ssed_1517 -67 5.3 AAATGAAAATCATTTGTAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1755
Ortholog function: Phosphomannomutase (EC 5.4.2.8) clustering with Aga operon
Shewanella oneidensis MR-1 SO1755 -30 5.3 AATTGAAAATGATTTTCACTG
Shewanella putrefaciens CN-32 Sputcn32_1454 -30 4.8 GATTGCAAATGATTTTCAATG
Shewanella sp W3-18-1 Sputw3181_2648 -30 4.8 GATTGCAAATGATTTTCAATG
Shewanella sp ANA-3 Shewana3_2707 -30 4.9 GATTGAAAATGATTTTCACTG
Shewanella sp MR-4 Shewmr4_2541 -30 4.9 GATTGAAAATGATTTTCACTG
Shewanella sp MR-7 Shewmr7_2608 -31 4.9 GATTGAAAATGATTTTCACTG
Shewanella baltica OS155 Sbal_1561 -30 4.8 GATTGCAAATGATTTTCAATG
Shewanella frigidimarina NCIMB 400 Sfri_2159 -30 5.4 TATTGAAAATGATTATCAATG
Shewanella sediminis HAW-EB3 Ssed_1517 -67 5.3 AAATGAAAATCATTTGTAGTT
Shewanella woodyi ATCC 51908 Swoo_3151 -66 5.2 CAATGCTAATGATTTTCAACT
Position: -322
Score: 5.6
Sequence: AAACGAGAATAGTTTTCAATT
Locus tag: Ssed_1530
Ssed_1530 -322 5.6 AAACGAGAATAGTTTTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrD
Ortholog function: Periplasmic decaheme cytochrome c, MtrD
Shewanella oneidensis MR-1 SO1782 -370 5.4 TAACGATAATAGTTTTCAATT
Shewanella sp ANA-3 Shewana3_2672 -326 5.4 TAACGATAATAGTTTTCAATT
Shewanella sp MR-4 Shewmr4_2506 -326 5.4 TAACGATAATAGTTTTCAATT
Shewanella sp MR-7 Shewmr7_2574 -326 5.4 TAACGATAATAGTTTTCAATT
Shewanella baltica OS155 Sbal_1593 -335 5.4 TAACGATAATAGTTTTCAATT
Shewanella amazonensis SB2B Sama_1213 -297 5.6 TAACGATAATAATTTTCAATT
-150 4.7 AAATCAGACTAATTATTAATA
Shewanella loihica PV-4 Shew_2519 -291 5.7 AAACGATAATAATTTTCAATT
-222 5.8 AAATGAGAACCATTTTCATTG
Shewanella pealeana ATCC 700345 Spea_2692 -317 5.7 AAACGATAATAATTTTCAATT
-252 5.1 AATTAAGAATGGTTACTATTT
Shewanella halifaxensis HAW-EB4 Shal_2778 -336 5.7 AAACGATAATAATTTTCAATT
Shewanella piezotolerans WP3 swp_3272 -339 5.7 AAACGATAATAATTTTCAATT
-239 5.3 AAATAGTAATGGTTATTATTT
Shewanella sediminis HAW-EB3 Ssed_1530 -322 5.6 AAACGAGAATAGTTTTCAATT
-229 4.9 AGATGAGAATGATTATCGCTC
-110 4.8 AGATAAAAATGTTACTCATTT
Position: -126
Score: 5.6
Sequence: AATTGAAAACTATTCTCGTTT
Locus tag: Ssed_1531
Ssed_1531 -126 5.6 AATTGAAAACTATTCTCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella oneidensis MR-1 SO1783 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella putrefaciens CN-32 Sputcn32_1480 -123 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp W3-18-1 Sputw3181_2621 -123 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp ANA-3 Shewana3_2671 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp MR-4 Shewmr4_2505 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp MR-7 Shewmr7_2573 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella baltica OS155 Sbal_1594 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella denitrificans OS217 Sden_2415 -116 5.4 AATTGAAAACTATTATCGTTA
Shewanella frigidimarina NCIMB 400 Sfri_2617 -111 5.1 AACTGAAAACTATTCTCGTTA
Shewanella amazonensis SB2B Sama_1214 -119 5.6 AATTGAAAATTATTATCGTTA
Shewanella loihica PV-4 Shew_2518 -192 5.8 CAATGAAAATGGTTCTCATTT
-123 5.7 AATTGAAAATTATTATCGTTT
Shewanella pealeana ATCC 700345 Spea_2691 -191 5.1 AAATAGTAACCATTCTTAATT
-126 5.7 AATTGAAAATTATTATCGTTT
Shewanella halifaxensis HAW-EB4 Shal_2777 -126 5.7 AATTGAAAATTATTATCGTTT
Shewanella piezotolerans WP3 swp_3271 -225 5.3 AAATAATAACCATTACTATTT
-125 5.7 AATTGAAAATTATTATCGTTT
Shewanella sediminis HAW-EB3 Ssed_1531 -219 4.9 GAGCGATAATCATTCTCATCT
-126 5.6 AATTGAAAACTATTCTCGTTT
Shewanella woodyi ATCC 51908 Swoo_3123 -218 4.8 TAGTGATAATCGTTCTCACAA
-125 5.6 AATTGAAAACTATTATCGTTT
Position: -56
Score: 5
Sequence: TAATGTGAATAATTACTATTT
Locus tag: Ssed_1968
Ssed_1968 -56 5 TAATGTGAATAATTACTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2039
Ortholog function: Signalling protein with EAL domain
Shewanella oneidensis MR-1 SO2039 -44 5.6 AAATGCGAATAATTAGCAATT
Shewanella putrefaciens CN-32 Sputcn32_2106 -48 4.9 AAATGCAAATAATAAGCAATT
Shewanella sp W3-18-1 Sputw3181_1906 -48 4.9 AAATGCAAATAATAAGCAATT
Shewanella sp ANA-3 Shewana3_2237 -44 5 AAATGCGAATAATTAGCGATT
Shewanella sp MR-4 Shewmr4_2112 -42 5 AAATGCGAATAATTAGCGATT
Shewanella sp MR-7 Shewmr7_1862 -44 5.6 AAATGCGAATAATTAGCAATT
Shewanella baltica OS155 Sbal_2274 -46 5.3 AAATGCGAATAATTAGTATTA
Shewanella baltica OS155 Sbal_4560 -46 5.3 AAATGCGAATAATTAGTATTA
Shewanella denitrificans OS217 Sden_1592 -44 5.2 AAATAGGAATAATTAGCATTA
Shewanella amazonensis SB2B Sama_1896 -42 5.5 TAATGAGATTTATTTGCATTA
Shewanella halifaxensis HAW-EB4 Shal_1861 -35 5.2 TAATATAAACAATTATCATTT
Shewanella piezotolerans WP3 swp_2763 29 5.6 TAATGTTAATAATTATCATTA
Shewanella sediminis HAW-EB3 Ssed_1968 -56 5 TAATGTGAATAATTACTATTT
Position: -38
Score: 5.1
Sequence: TGGTGAGAACGATTATTATTA
Locus tag: Ssed_2007
Ssed_2007 -38 5.1 TGGTGAGAACGATTATTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_1866
Ortholog function: Probable two-component system sensor kinase
Shewanella amazonensis SB2B Sama_1866 -40 5.6 TAATGCGAATCATTTTTATTT
Shewanella sediminis HAW-EB3 Ssed_2007 -38 5.1 TGGTGAGAACGATTATTATTA
Shewanella woodyi ATCC 51908 Swoo_2596 -48 5.6 AATTGCGAACAATTATCATTA
Position: -64
Score: 5.8
Sequence: CATTGATAATCATTCTCATTT
Locus tag: Ssed_2208
Ssed_2208 -64 5.8 CATTGATAATCATTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_2008
Ortholog function: Hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_1997 -63 5.9 TGTTGATAATAATTATCATTT
Shewanella sp MR-4 Shewmr4_2003 -59 5.7 TGTTGATAACTATTCTCATTT
Shewanella sp MR-7 Shewmr7_1972 -59 5.7 TGTTGATAACTATTCTCATTT
Shewanella baltica OS155 Sbal_4484 -165 4.7 AAATAAAAATAATGATCACAT
-63 5.6 TGTTGATAACAGTTATCATTT
Shewanella baltica OS155 Sbal_2198 -165 4.7 AAATAAAAATAATGATCACAT
-63 5.6 TGTTGATAACAGTTATCATTT
Shewanella denitrificans OS217 Sden_1854 -36 6 AAATAAAAACCATTCTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_2008 -116 6 AATTGATAACTATTCTCATTA
Shewanella amazonensis SB2B Sama_1788 -52 6 ATATGATAACTATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_2212 -117 6.1 TATTGATAATCATTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_2195 -62 5.9 TGTTGATAATCATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_2208 -64 5.8 CATTGATAATCATTCTCATTT
Shewanella woodyi ATCC 51908 Swoo_2428 -62 5.9 AGTTGATAACCATTCTCATTT
Position: -137
Score: 4.6
Sequence: TAATGGGAATGATTATCTCTA
Locus tag: Ssed_2230
Ssed_2230 -137 4.6 TAATGGGAATGATTATCTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr2
Ortholog function: Bacterioferritin subunit 2
Shewanella oneidensis MR-1 SO1111 -125 5.2 TAATGAGAATGCTTTTAATTA
Shewanella putrefaciens CN-32 Sputcn32_0948 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp W3-18-1 Sputw3181_3228 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp ANA-3 Shewana3_0946 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-4 Shewmr4_0944 -124 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-7 Shewmr7_0982 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella baltica OS155 Sbal_0932 -126 5.3 AAATGAGAATGGTTGTTATCA
Shewanella denitrificans OS217 Sden_0990 -120 5.6 TAATGATAATGGTTATCACTA
Shewanella frigidimarina NCIMB 400 Sfri_0957 -121 6 TAATGATAATAGTTATCAATT
Shewanella amazonensis SB2B Sama_2530 -122 4.7 CAATAAGAATAATTAGCCTTT
Shewanella loihica PV-4 Shew_2873 -115 4.8 GAATGAGAACGATTTTCTTTG
Shewanella pealeana ATCC 700345 Spea_3095 -116 5.4 TAATGAGAATGGTTATCTTTA
Shewanella halifaxensis HAW-EB4 Shal_3179 -121 4.3 TAGTGATAATGAAAATCACTA
-88 4.3 TGTTGATATTTAACCTTATTT
Shewanella piezotolerans WP3 swp_1175 -118 5.5 TAATGATAATAATTATCTTTA
Shewanella sediminis HAW-EB3 Ssed_2230 -137 4.6 TAATGGGAATGATTATCTCTA
Shewanella woodyi ATCC 51908 Swoo_3608 -167 4.5 AAATGATAATGCTTAATGTTA
Position: -34
Score: 5.5
Sequence: AAATGATAACAGTTCGTATTT
Locus tag: Ssed_2316
Ssed_2316 -34 5.5 AAATGATAACAGTTCGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2426
Ortholog function: Two component transcriptional regulator, Winged helix family
Shewanella oneidensis MR-1 SO2426 -2 5.6 AAATGATATTGATTCTCGTTT
Shewanella putrefaciens CN-32 Sputcn32_1941 -2 5.5 AAATGATATCGATTCTCGTTT
Shewanella sp W3-18-1 Sputw3181_2064 -2 5.5 AAATGATATCGATTCTCGTTT
Shewanella sp ANA-3 Shewana3_1959 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella sp MR-4 Shewmr4_1904 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella sp MR-7 Shewmr7_2074 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella baltica OS155 Sbal_2050 -32 5.1 AAATGATATAGATTCTCGTTT
Shewanella denitrificans OS217 Sden_1906 10 5.6 TAATGAAAATGGTTATCGTTT
Shewanella frigidimarina NCIMB 400 Sfri_2150 -32 5.6 TAATGGTAATCGTTATCATTA
Shewanella amazonensis SB2B Sama_1718 -32 4.8 GAATAACAACCGTTCGCATTT
Shewanella loihica PV-4 Shew_1936 -31 6 TAATGATAACTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_2236 -34 5.3 TAATGCGAATTATTCGTATTT
Shewanella halifaxensis HAW-EB4 Shal_2220 -34 5.6 AAATGAAAATGATTCGCATTG
Shewanella piezotolerans WP3 swp_2595 -9 5.5 CAATGATAATTGTTCGCATTT
Shewanella sediminis HAW-EB3 Ssed_2316 -34 5.5 AAATGATAACAGTTCGTATTT
Shewanella woodyi ATCC 51908 Swoo_2294 -36 5.4 TGTTGATAATTGTTCGCATTT
Position: -49
Score: 5.5
Sequence: AAATGCAAATCGTTATCATTC
Locus tag: Ssed_3242
Ssed_3242 -49 5.5 AAATGCAAATCGTTATCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1482
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO1482 -49 5 GGATGGAAATCATTATCATTC
Shewanella putrefaciens CN-32 Sputcn32_1237 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp W3-18-1 Sputw3181_2867 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp ANA-3 Shewana3_2944 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-4 Shewmr4_2768 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-7 Shewmr7_2846 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella baltica OS155 Sbal_1315 -49 5 AAATGCAAATCATTACTATTC
Shewanella denitrificans OS217 Sden_1445 -48 5.2 CTATGATAATCATTATCATTC
Shewanella frigidimarina NCIMB 400 Sfri_2440 -52 5.6 TTATGATAATCATTATCATTC
Shewanella loihica PV-4 Shew_2690 -51 6 TATTGATAATCGTTATCATTT
Shewanella pealeana ATCC 700345 Spea_2930 -51 6 TAATGATAATCGTTATCATCT
Shewanella halifaxensis HAW-EB4 Shal_3021 -51 5.6 TAATAAGAATCGTTATCATCT
Shewanella piezotolerans WP3 swp_3568 -51 5.8 TAATGATAATGGTTATCATCA
Shewanella sediminis HAW-EB3 Ssed_3242 -49 5.5 AAATGCAAATCGTTATCATTC
Shewanella woodyi ATCC 51908 Swoo_3375 -51 6 TAATGATAATCGTTATCATCT
Position: -42
Score: 5.5
Sequence: TAAGGATAATAATTCTCATTA
Locus tag: Ssed_3638
Ssed_3638 -42 5.5 TAAGGATAATAATTCTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0719
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO0719 -40 4.9 AGGTAGGAACAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_2929 -43 5.8 AAAAGAGAATAATTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3020 -42 5.8 AAAGGAGAATAATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_3638 -42 5.5 TAAGGATAATAATTCTCATTA
Position: -76
Score: 5.1
Sequence: TAATGCAAACGATTCGTATTT
Locus tag: Ssed_3793
Ssed_3793 -76 5.1 TAATGCAAACGATTCGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_0810
Ortholog function: Hypothetical protein
Shewanella denitrificans OS217 Sden_0721 -74 5.8 TAATGCAAATTGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0810 -78 5.6 TAATGCGAATCGTTATCAATT
Shewanella loihica PV-4 Shew_0675 -77 6 TAATGCAAATTATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_0670 -100 5.7 TAATGTAAATCATTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3528 -100 5.7 TAATGTAAATCATTCTCATTT
Shewanella piezotolerans WP3 swp_4049 -86 5.8 TAATGCAAATCGTTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_3793 -76 5.1 TAATGCAAACGATTCGTATTT
Shewanella woodyi ATCC 51908 Swoo_0790 -79 5.8 TAATGAAAACGATTCGCATTT
Position: -84
Score: 5.5
Sequence: AAATGATAACCACTCTCATTA
Locus tag: Ssed_3888
Ssed_3888 -84 5.5 AAATGATAACCACTCTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_0590
Ortholog function: TonB-dependent receptor
Shewanella sp MR-4 Shewmr4_0630 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella sp MR-7 Shewmr7_3399 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella amazonensis SB2B Sama_0590 -2 5.9 AAATGATAACTATTGTCATTA
Shewanella pealeana ATCC 700345 Spea_0713 -66 5.5 AAATGATAATCAATCCCATTA
Shewanella halifaxensis HAW-EB4 Shal_0766 -67 5.6 AAATGAGAATGAATAGCATTA
Shewanella sediminis HAW-EB3 Ssed_3888 -84 5.5 AAATGATAACCACTCTCATTA
Shewanella woodyi ATCC 51908 Swoo_3787 -2 5.5 AAATGATAATCAATCCCATTA
Position: -83
Score: 5.6
Sequence: AAATGATAACCGTTTGCATTA
Locus tag: Ssed_3889
Ssed_3889 -83 5.6 AAATGATAACCGTTTGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_4035
Ortholog function: Conserved hypothetical signal peptide protein, possibly porin
Shewanella baltica OS155 Sbal_2014 -93 5.4 AAATGCGAATTGTTTGCATTA
Shewanella denitrificans OS217 Sden_0638 -91 5.1 AAATACGAATAGTTTGCATTA
Shewanella frigidimarina NCIMB 400 Sfri_4035 -106 5.6 TAATGATAATGGTTTGCATTA
Shewanella amazonensis SB2B Sama_0589 -84 5.1 CAATGCGAATCGTTTGCATTT
Shewanella loihica PV-4 Shew_3120 -84 5.7 TAATGATAATAGTTTGCATTA
Shewanella pealeana ATCC 700345 Spea_0712 -82 5.6 TAATGATAACGATTTGCATTA
Shewanella piezotolerans WP3 swp_4367 -81 6 AAATGAGAATAATTTGCATTA
Shewanella sediminis HAW-EB3 Ssed_3889 -83 5.6 AAATGATAACCGTTTGCATTA
Shewanella woodyi ATCC 51908 Swoo_3788 -83 5.4 GAATGATAACAATTTGCATTA
Position: -107
Score: 5.7
Sequence: TAATGATAATTATTAGTATTT
Locus tag: Ssed_4374
Ssed_4374 -107 5.7 TAATGATAATTATTAGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftn
Ortholog function: Ferritin, Ftn
Shewanella oneidensis MR-1 SO0139 -133 5.7 AAATGAAAATCATTTTTATCA
Shewanella putrefaciens CN-32 Sputcn32_0132 -131 5.7 AAATGAAAATCATTTTTATCA
Shewanella sp W3-18-1 Sputw3181_3940 -131 5.7 AAATGAAAATCATTTTTATCA
Shewanella sp ANA-3 Shewana3_0132 -132 5.7 AAATGAAAATCATTTTTATCA
Shewanella sp MR-4 Shewmr4_0133 -132 5.4 AAATGCAAATCATTTTTATCA
Shewanella sp MR-7 Shewmr7_0127 -132 5.4 AAATGCAAATCATTTTTATCA
Shewanella baltica OS155 Sbal_4222 -131 5.7 AAATGAAAATCATTTTTATCA
Shewanella amazonensis SB2B Sama_0141 -113 5.1 TAATGATAAGTGTTACTATTT
Shewanella loihica PV-4 Shew_0042 -381 5.4 TAACGATAATTATTTGCATTT
Shewanella pealeana ATCC 700345 Spea_0129 -111 6 AAATGAAAACCATTATTATTT
Shewanella halifaxensis HAW-EB4 Shal_4189 -111 6 AAATGAAAACCATTATTATTT
Shewanella piezotolerans WP3 swp_0167 -110 6 AAATGAAAACCATTATTATTT
Shewanella sediminis HAW-EB3 Ssed_4374 -107 5.7 TAATGATAATTATTAGTATTT
Shewanella woodyi ATCC 51908 Swoo_4766 -176 5.7 TAATGAGAATTATTTGTATTT
Position: -47
Score: 6.1
Sequence: AGATGAGAATAGTTATCATTT
Locus tag: Ssed_4479
Ssed_4479 -47 6.1 AGATGAGAATAGTTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4740
Ortholog function: Conserved hypothetical inner membrane protein
Shewanella oneidensis MR-1 SO4740 -60 6 TAATGAGAATTGTTATCATCT
Shewanella putrefaciens CN-32 Sputcn32_3921 -59 6 TAATGAGAATTGTTATCATCT
Shewanella sp W3-18-1 Sputw3181_4047 -59 6 TAATGAGAATTGTTATCATCT
Shewanella sp ANA-3 Shewana3_4124 -60 6 TAATGAGAATTGTTATCATCT
Shewanella sp MR-4 Shewmr4_3919 -60 6 TAATGAGAATTGTTATCATCT
Shewanella sp MR-7 Shewmr7_4011 -60 6 TAATGAGAATTGTTATCATCT
Shewanella baltica OS155 Sbal_4341 -59 6 TAATGAGAATTGTTATCATCT
Shewanella denitrificans OS217 Sden_3706 -50 6 TATTGATAACGATTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_4031 -46 6 TAATGAGAACTGTTATCATTT
Shewanella amazonensis SB2B Sama_3636 -50 5.9 AAGTGATAACTATTATCATTT
Shewanella loihica PV-4 Shew_3815 -46 6.5 AAATGATAATAATTATCATTT
Shewanella pealeana ATCC 700345 Spea_4226 -47 5.9 AAATGAGAAGCGTTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_4274 -47 6.3 AAATGATAACCATTATCATTT
Shewanella piezotolerans WP3 swp_5137 -46 6.1 AAATGATAATCGTTATCATCT
Shewanella sediminis HAW-EB3 Ssed_4479 -47 6.1 AGATGAGAATAGTTATCATTT
Shewanella woodyi ATCC 51908 Swoo_4887 -50 6.3 AAATGAGAACCATTATCATTT
Position: -66
Score: 6
Sequence: AAATAAAAACGATTCTCATTT
Locus tag: Ssed_4483
Ssed_4483 -66 6 AAATAAAAACGATTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4743
Ortholog function: TonB-dependent siderophore receptor
Shewanella oneidensis MR-1 SO4743 -116 5.7 AAATAAAAACAATTCTTATTT
Shewanella putrefaciens CN-32 Sputcn32_3953 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp W3-18-1 Sputw3181_4050 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp ANA-3 Shewana3_4127 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-4 Shewmr4_3922 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-7 Shewmr7_4014 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella baltica OS155 Sbal_4363 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_4042 -68 5.4 AAATGGAAACGCTTCTCATTT
Shewanella amazonensis SB2B Sama_3641 -73 5.9 AAATGCTAATCATTATCAATT
Shewanella loihica PV-4 Shew_3841 -69 6 AAATAAAAACAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_4236 -69 6 AAATAAAAATAGTTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_4287 -68 6 AAATAAAAATAGTTCTCATTT
Shewanella piezotolerans WP3 swp_5150 -68 5.6 GAATAAAAACAATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_4483 -66 6 AAATAAAAACGATTCTCATTT
Shewanella woodyi ATCC 51908 Swoo_4894 -67 6.2 AAATAAAAATAATTCTCATTT
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