Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CueR regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: CueR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: activator (repressor)
Biological process: Copper resistance
Effector: Copper ion, (Cu+)
Phylum: Proteobacteria/Gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_1484
Regulated genes 2
Built upon 26 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -81
Score: 6
Sequence: TGTCTCCCCTAATGGGAGAGT
Locus tag: Ssed_1484
Ssed_1484 -81 6 TGTCTCCCCTAATGGGAGAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cueR
Ortholog function: Copper-responsive transcriptional regulator, MerR family
Shewanella putrefaciens CN-32 Sputcn32_1407 -86 6.5 AGTCTCCCATCACGGGAGAGT
Shewanella sp W3-18-1 Sputw3181_2694 -86 6.5 AGTCTCCCATCACGGGAGAGT
Shewanella sp ANA-3 Shewana3_2762 -92 6.5 AGTCTCCCATCACGGGAGAGT
Shewanella sp MR-4 Shewmr4_2588 -104 6.5 AGTCTCCCATCACGGGAGAGT
Shewanella sp MR-7 Shewmr7_2655 -104 6.5 AGTCTCCCATCACGGGAGAGT
Shewanella baltica OS155 Sbal_1504 -105 6.2 AGTCTCCCATTGCGGGAGAGT
Shewanella pealeana ATCC 700345 Spea_2773 -57 5.1 TGTCTCCTACAGGGGGAGAGT
Shewanella halifaxensis HAW-EB4 Shal_2868 -81 6 TGTCTCCCATAAGGGGAGAGT
Shewanella piezotolerans WP3 swp_3378 -58 6 TGTCTCCCATAAGGGGAGAGT
Shewanella sediminis HAW-EB3 Ssed_1484 -81 6 TGTCTCCCCTAATGGGAGAGT
Shewanella woodyi ATCC 51908 Swoo_3192 -60 5.8 TGTCTCCCCTTATGGGAGGGT
Position: -80
Score: 6
Sequence: ACTCTCCCATTAGGGGAGACA
Locus tag: Ssed_1485
Ssed_1485 -80 6 ACTCTCCCATTAGGGGAGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: copA
Ortholog function: Copper-translocating P-type ATPase (EC 3.6.3.4)
Shewanella oneidensis MR-1 SO_1689 -65 6.5 ACTCTCCCGTGATGGGAGACT
Shewanella putrefaciens CN-32 Sputcn32_1408 -65 6.5 ACTCTCCCGTGATGGGAGACT
Shewanella sp W3-18-1 Sputw3181_2693 -65 6.5 ACTCTCCCGTGATGGGAGACT
Shewanella sp ANA-3 Shewana3_2761 -65 6.5 ACTCTCCCGTGATGGGAGACT
Shewanella sp MR-4 Shewmr4_2587 -65 6.5 ACTCTCCCGTGATGGGAGACT
Shewanella sp MR-7 Shewmr7_2654 -65 6.5 ACTCTCCCGTGATGGGAGACT
Shewanella baltica OS155 Sbal_1505 -65 6.2 ACTCTCCCGCAATGGGAGACT
Shewanella pealeana ATCC 700345 Spea_2772 -63 5.1 ACTCTCCCCCTGTAGGAGACA
Shewanella halifaxensis HAW-EB4 Shal_2867 -62 6 ACTCTCCCCTTATGGGAGACA
Shewanella piezotolerans WP3 swp_3377 -73 6 ACTCTCCCCTTATGGGAGACA
Shewanella sediminis HAW-EB3 Ssed_1485 -80 6 ACTCTCCCATTAGGGGAGACA
Shewanella woodyi ATCC 51908 Swoo_3191 -81 5.8 ACCCTCCCATAAGGGGAGACA
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