Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SO4326 regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: SO4326 - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Multidrug resistance
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_4148
Regulated genes 1
Built upon 8 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: 0
Score: 7.1
Sequence: GTGAATGAACGTTCATTCAG
Locus tag: Ssed_4148
Ssed_4148 0 7.1 GTGAATGAACGTTCATTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: vexR
Ortholog function: putative bile resistance transcriptional regulator VexR, TetR family
Shewanella oneidensis MR-1 SO_4326 0 7.6 ATGAATGAACGTTCATTCAT
Shewanella sp ANA-3 Shewana3_0373 -42 7.6 ATGAATGAACGTTCATTCAT
Shewanella amazonensis SB2B Sama_3267 -34 7.4 ATGAATGAACGTTCATTCAC
Shewanella pealeana ATCC 700345 Spea_0359 0 7.6 ATGAATGAACGTTCATTCAT
Shewanella halifaxensis HAW-EB4 Shal_3931 15 7.6 ATGAATGAACGTTCATTCAT
Shewanella piezotolerans WP3 swp_0380 -107 7.6 ATGAATGAACGTTCATTCAT
Shewanella sediminis HAW-EB3 Ssed_4148 0 7.1 GTGAATGAACGTTCATTCAG
Shewanella woodyi ATCC 51908 Swoo_0467 -44 6.9 ATGAATGAACATTCATTCAC
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