Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_3873
Regulated genes 232
Built upon 2713 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -48
Score: 3.8
Sequence: TTTTCTGATAGATTTTACATCA
Locus tag: Ssed_0025
Ssed_0025 -48 3.8 TTTTCTGATAGATTTTACATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0023
Ortholog function: FIG000605: protein co-occurring with transport systems (COG1739)
Shewanella oneidensis MR-1 SO0023 -237 4.4 CTTTGTGATACACTGCACAAAG
Shewanella putrefaciens CN-32 Sputcn32_0015 -302 4.2 CTTTGTGATACACTGCACAGAG
Shewanella sp W3-18-1 Sputw3181_0015 -302 4.2 CTTTGTGATACACTGCACAGAG
Shewanella sp ANA-3 Shewana3_0026 -255 4.4 CTTTGTGATACACTGCACAAAG
Shewanella sp MR-4 Shewmr4_0020 -255 4.4 CTTTGTGATACACTGCACAAAG
Shewanella sp MR-7 Shewmr7_0018 -255 4.4 CTTTGTGATACACTGCACAAAG
Shewanella baltica OS155 Sbal_0023 -302 4.2 CTTTGTGATACACTGCACAGAG
Shewanella amazonensis SB2B Sama_0034 -109 4 CTTTGTGATACACTGCACAGCA
Shewanella pealeana ATCC 700345 Spea_0020 -252 4.1 CAGTGTGCGACGAATCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0018 -250 4 CAGTGTGCGACTAATCACAAAA
Shewanella sediminis HAW-EB3 Ssed_0025 -48 3.8 TTTTCTGATAGATTTTACATCA
Position: -96
Score: 4.5
Sequence: AAATATTACCTCGATCACATAA
Locus tag: Ssed_0094
Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytcB
Ortholog function: Cytochrome c4
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella amazonensis SB2B Sama_0091 -95 3.7 AAATATTGCCCCGATCACATAT
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Position: -95
Score: 4.7
Sequence: TTATGTGATCGAGGTAATATTT
Locus tag: Ssed_0095
Ssed_0095 -95 4.7 TTATGTGATCGAGGTAATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: engB
Ortholog function: GTP-binding protein EngB
Shewanella oneidensis MR-1 SO4667 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella putrefaciens CN-32 Sputcn32_3907 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp W3-18-1 Sputw3181_0044 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp ANA-3 Shewana3_4110 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-4 Shewmr4_3906 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-7 Shewmr7_3998 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella baltica OS155 Sbal_0052 -95 4.6 TAATGTGATCGGAGTAATATTT
Shewanella denitrificans OS217 Sden_3621 -182 3.8 TATTATGCTCGAAATAATATTT
Shewanella frigidimarina NCIMB 400 Sfri_3944 -104 4.7 TAATGTGATCAGGCTAATATTT
Shewanella amazonensis SB2B Sama_0092 -96 4.1 ATATGTGATCGGGGCAATATTT
Shewanella loihica PV-4 Shew_3715 -95 4.7 TTATGTGATCGGGGTAATATTT
Shewanella pealeana ATCC 700345 Spea_0101 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella halifaxensis HAW-EB4 Shal_4221 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella piezotolerans WP3 swp_5074a -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella sediminis HAW-EB3 Ssed_0095 -95 4.7 TTATGTGATCGAGGTAATATTT
Shewanella woodyi ATCC 51908 Swoo_0058 -110 4.8 TATTGTGATCGAGGTAATATTT
Position: -115
Score: 4.2
Sequence: TATTGAGAATTACTTCTCAAAT
Locus tag: Ssed_0144
Ssed_0144 -115 4.2 TATTGAGAATTACTTCTCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4700
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO4700 -154 4.5 AAAAGTGAGCCAGTTCTCAATT
Shewanella putrefaciens CN-32 Sputcn32_0086 -153 4.5 AAAAGTGAACTAGTTCTCAATT
Shewanella sp W3-18-1 Sputw3181_3979 -153 4.5 AAAAGTGAACTAGTTCTCAATT
Shewanella sp ANA-3 Shewana3_4052 -154 4.3 AAAAGCGAACCAGTTCACAATT
Shewanella sp MR-4 Shewmr4_3843 -95 4.4 AAAAGCGACTCAGTTCACAATT
Shewanella sp MR-7 Shewmr7_3936 -95 4.4 AAAAGCGACTCAGTTCACAATT
Shewanella baltica OS155 Sbal_0123 -154 4.6 AAAAGTGAACTCGTTCGCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3875 -148 4 TAGAGTGACTAAGATCCCAATT
Shewanella loihica PV-4 Shew_3658 -101 3.6 TATTGCCAAGCGGATCGCAAAT
Shewanella halifaxensis HAW-EB4 Shal_0192 -105 4.2 TATTGTAAACCACGTCGCAAAT
Shewanella piezotolerans WP3 swp_4927 -104 3.7 TATTGCAAAGCGCCTCGCAAAT
Shewanella sediminis HAW-EB3 Ssed_0144 -115 4.2 TATTGAGAATTACTTCTCAAAT
Shewanella woodyi ATCC 51908 Swoo_0123 -153 4.3 TACTTTGACCCAGCTCAAAAAA
-78 3.9 AAGCGTTATCATTTACACATTA
Position: -283
Score: 3.8
Sequence: AATTGTGATGACGTTGATGAAT
Position: -210
Score: 4.1
Sequence: ATTTGAGAAGTAATTCTCAATA
Locus tag: Ssed_0145
Ssed_0145 -283 3.8 AATTGTGATGACGTTGATGAAT
-210 4.1 ATTTGAGAAGTAATTCTCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: prlC
Ortholog function: Oligopeptidase A (EC 3.4.24.70)
Shewanella oneidensis MR-1 SO4699 -136 4.2 AATTGAGAACTGGCTCACTTTT
Shewanella putrefaciens CN-32 Sputcn32_0087 -178 4.3 AATTGAGAACTAGTTCACTTTT
Shewanella sp W3-18-1 Sputw3181_3978 -178 4.3 AATTGAGAACTAGTTCACTTTT
Shewanella sp ANA-3 Shewana3_4051 -136 4.6 AATTGTGAACTGGTTCGCTTTT
Shewanella sp MR-4 Shewmr4_3842 -136 4.3 AATTGTGAACTGAGTCGCTTTT
Shewanella sp MR-7 Shewmr7_3935 -136 4.3 AATTGTGAACTGAGTCGCTTTT
Shewanella baltica OS155 Sbal_0124 -136 4.3 AAATGCGAACGAGTTCACTTTT
Shewanella frigidimarina NCIMB 400 Sfri_3874 -226 4 AATTGGGATCTTAGTCACTCTA
Shewanella loihica PV-4 Shew_3657 -247 3.8 ATTTGCGATCCGCTTGGCAATA
Shewanella pealeana ATCC 700345 Spea_4065 -143 3.9 AAACTTGATTAAGATCGCGGAT
Shewanella halifaxensis HAW-EB4 Shal_0193 -192 4.4 ATTTGCGACGTGGTTTACAATA
-142 4.2 AAATTTGATCTAGATCCTAGAT
Shewanella piezotolerans WP3 swp_4926 -311 3.7 ATTTGCGAGGCGCTTTGCAATA
-261 3.6 AAAATTGACTTTAGTCAAAGAT
Shewanella sediminis HAW-EB3 Ssed_0145 -210 4.1 ATTTGAGAAGTAATTCTCAATA
Shewanella woodyi ATCC 51908 Swoo_0124 -172 4.2 TTTTTTGAGCTGGGTCAAAGTA
Position: -343
Score: 4
Sequence: ATTATTGATCTTGATCAATATT
Locus tag: Ssed_0198
Ssed_0198 -343 4 ATTATTGATCTTGATCAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4606
Ortholog function: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Shewanella oneidensis MR-1 SO4606 -317 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella putrefaciens CN-32 Sputcn32_3782 -309 4.4 ATAAGTGATCTTGATCAATATT
Shewanella sp W3-18-1 Sputw3181_0133 -309 4.4 ATAAGTGATCTTGATCAATATT
Shewanella sp ANA-3 Shewana3_3991 -318 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella sp MR-4 Shewmr4_3791 -318 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella sp MR-7 Shewmr7_3864 -317 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella baltica OS155 Sbal_0154 -317 4.4 ATAAGTGATCTTGATCAATATT
Shewanella denitrificans OS217 Sden_3517 -316 4.4 AAAAGTGATCTTGATCAATATT
Shewanella frigidimarina NCIMB 400 Sfri_0258 -321 3.9 CAAAGTGATCTTGATCAATGTT
Shewanella amazonensis SB2B Sama_3483 -318 4.4 TAAAGTGATCTTGATCAATATT
Shewanella loihica PV-4 Shew_0125 -321 4.4 AAAAGTGATCTTGATCAATATT
-264 4 TTATTTGTTATATCGCACAATT
Position: -86
Score: 3.7
Sequence: CAGTATGATCTAGTTTATAATT
Locus tag: Ssed_0216
Ssed_0216 -86 3.7 CAGTATGATCTAGTTTATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cymA
Ortholog function: membrane anchored tetraheme cytochrome c, CymA
Shewanella oneidensis MR-1 SO4591 -307 4 AAATGTCGCCTTGATCACATTT
Shewanella putrefaciens CN-32 Sputcn32_0286 -306 4.7 AAGTGTGCTATCGGTCACAATT
Shewanella sp W3-18-1 Sputw3181_3916 -306 4.1 AAGTGTGCCATCGATTACAATT
Shewanella sp ANA-3 Shewana3_3977 -309 4 AAATGTCGCGTGGATCACATTT
Shewanella sp MR-4 Shewmr4_3777 -308 4.3 AAATGTCGTCTTGATCACATTT
Shewanella sp MR-7 Shewmr7_3850 -318 4.5 AAATGTAGTGTTGATCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_0272 -146 4.3 AGTCGAGATCTAGCTCGCATTT
Shewanella loihica PV-4 Shew_3540 -169 4.2 TATTATGAGCAATTTCATAAAA
Shewanella piezotolerans WP3 swp_4806 -276 3.8 ATTTGAGATCTAAAAAAAAATA
Shewanella sediminis HAW-EB3 Ssed_0216 -86 3.7 CAGTATGATCTAGTTTATAATT
Shewanella woodyi ATCC 51908 Swoo_0195 -152 4.3 AATTTTTATATTTATCAAAATA
Position: -302
Score: 4.4
Sequence: TAAAGTGATCTACAACTCAAAT
Locus tag: Ssed_0226
Ssed_0226 -302 4.4 TAAAGTGATCTACAACTCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: menD
Ortholog function: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
Shewanella putrefaciens CN-32 Sputcn32_0310 -90 4.2 ACTTGGGATTAGTTTCACATTA
Shewanella sp W3-18-1 Sputw3181_3898 -90 4.2 ACTTGGGATTAGTTTCACATTA
Shewanella sp ANA-3 Shewana3_3965 -287 3.8 AGTTAAGATACAGAGCACATTA
-92 4.1 ACTTGAGACTGGTTTCACATTA
Shewanella sp MR-4 Shewmr4_3767 -287 3.7 AGTTAAGATACAGAACACATTA
-92 4.1 ACTTGAGACTGGTTTCACATTA
Shewanella sp MR-7 Shewmr7_3840 -287 3.8 AGTTAAGATACAGAGCACATTA
-92 4 ACTTGAGACTAGTTTCACATTA
Shewanella baltica OS155 Sbal_0178 -173 4 CAAATTTATCTTTATCACATTT
-89 4.7 AGTTGAGATATGTTTCACATTA
Shewanella pealeana ATCC 700345 Spea_3971 -149 4 TTTTGCTACCCTTATCACATAC
Shewanella halifaxensis HAW-EB4 Shal_0297 -177 5 TTTTGTTATACCAATCACATAT
Shewanella piezotolerans WP3 swp_4792 -74 4.3 ATATTTGATTCATCTCATATAC
Shewanella sediminis HAW-EB3 Ssed_0226 -302 4.4 TAAAGTGATCTACAACTCAAAT
Position: -100
Score: 4.1
Sequence: TTGTTTGATTTAAATCAAGGTT
Locus tag: Ssed_0240
Ssed_0240 -100 4.1 TTGTTTGATTTAAATCAAGGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0312
Ortholog function: hypothetical protein
Shewanella pealeana ATCC 700345 Spea_3968 -127 3.4 TTTTATGATGAATAAAACGTTC
Shewanella halifaxensis HAW-EB4 Shal_0300 -100 3.6 ATAATTGATTTGTATCAATGTT
Shewanella sediminis HAW-EB3 Ssed_0240 -100 4.1 TTGTTTGATTTAAATCAAGGTT
Shewanella woodyi ATCC 51908 Swoo_0239 -92 4 TAACTTGATTTGAATCAATATT
Position: -42
Score: 5
Sequence: TCTTGTGATACAGGTCACATTA
Locus tag: Ssed_0288
Ssed_0288 -42 5 TCTTGTGATACAGGTCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3921
Ortholog function: hypothetical protein
Shewanella pealeana ATCC 700345 Spea_3921 -41 4.4 AACTGTGACAAAGATCACTATT
Shewanella halifaxensis HAW-EB4 Shal_0348 -42 5 AAGTGTGACGCAGATCACCATT
Shewanella sediminis HAW-EB3 Ssed_0288 -42 5 TCTTGTGATACAGGTCACATTA
Shewanella woodyi ATCC 51908 Swoo_3910 -48 5.2 AAGTGTGACTTAGATCACACAA
Position: -110
Score: 3.9
Sequence: GAATTTGTCATAGATCACATTT
Locus tag: Ssed_0331
Ssed_0331 -110 3.9 GAATTTGTCATAGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0355
Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1 SO0355 -84 4.4 TTATTTGCGCTACATCACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3634 -84 3.8 CTATTTGCGCAGCATCACAAAA
-45 3.9 TAAAGTGATGGGGTAAAAATAA
Shewanella sp W3-18-1 Sputw3181_3774 -84 3.8 CTATTTGCGCAGCATCACAAAA
-45 3.9 TAAAGTGATGGGGTAAAAATAA
Shewanella baltica OS155 Sbal_0351 -73 3.8 CTATTTGCGCGGGCTCACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0361 -51 4.3 TTGTGTTACCTAGCACACATAT
Shewanella pealeana ATCC 700345 Spea_3882 -124 4.3 AAGTTTGTCTTAGATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_0387 -124 4.3 AAGTTTGTCTTAGATCACATTT
Shewanella piezotolerans WP3 swp_0315 -127 3.9 AAAGTTGTCATAGATCACATTT
Shewanella sediminis HAW-EB3 Ssed_0331 -110 3.9 GAATTTGTCATAGATCACATTT
Position: -296
Score: 4.2
Sequence: AAGTTTGAATCAGATCACACTC
Locus tag: Ssed_0437
Ssed_0437 -296 4.2 AAGTTTGAATCAGATCACACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yniC
Ortholog function: 2-deoxyglucose-6-phosphate hydrolase YniC
Shewanella oneidensis MR-1 SO0431 -302 3.9 AAGTATGAATCAGGTCACACTC
-118 3.8 TAACGAAATGCTTTTCACAGTA
Shewanella putrefaciens CN-32 Sputcn32_3410 -316 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp W3-18-1 Sputw3181_0533 -316 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp ANA-3 Shewana3_0432 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp MR-4 Shewmr4_0436 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp MR-7 Shewmr7_3593 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella baltica OS155 Sbal_3906 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella denitrificans OS217 Sden_3378 -316 4 AAGTATGAATCGGCTCACACTG
Shewanella frigidimarina NCIMB 400 Sfri_3772 -288 4.3 AAGTATGAATCAGCTCACACTA
Shewanella amazonensis SB2B Sama_0381 -255 4 AAGTATGAATCAGCTCACACTC
Shewanella loihica PV-4 Shew_3425 -295 4.1 AAGTATGAATCAGATCACACTC
Shewanella pealeana ATCC 700345 Spea_0424 -286 4.3 AAGTATGAATCCGATCACACTT
-178 4.1 AAACTTGATCTAAATTATATAA
Shewanella halifaxensis HAW-EB4 Shal_0481 -286 4.5 AAGTATGAATCCGATCACATTT
-178 3.7 AACCTTGATCTAAATTATATAA
Shewanella piezotolerans WP3 swp_4741 -283 4.4 AAGTATGAATCAGATCACACTT
-177 3.7 AACACTGAGATTAATCACATAA
-101 3.7 TTTCGTAAAGCTAAACACAATA
Shewanella sediminis HAW-EB3 Ssed_0437 -296 4.2 AAGTTTGAATCAGATCACACTC
Shewanella woodyi ATCC 51908 Swoo_0284 -296 4.2 AAGTTTGAATCAGATCACACTC
Position: -141
Score: 4.4
Sequence: GAGTGTGATCTGATTCAAACTT
Locus tag: Ssed_0438
Ssed_0438 -141 4.4 GAGTGTGATCTGATTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shewanella oneidensis MR-1 SO0432 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella putrefaciens CN-32 Sputcn32_3409 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp W3-18-1 Sputw3181_0534 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp ANA-3 Shewana3_0433 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp MR-4 Shewmr4_0437 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp MR-7 Shewmr7_3592 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella baltica OS155 Sbal_3905 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella denitrificans OS217 Sden_3377 -139 4.1 CAGTGTGAGCCGATTCATACTT
-67 3.9 AATTGTTAGCCTTATCACTATG
Shewanella frigidimarina NCIMB 400 Sfri_3771 -139 4.6 TAGTGTGAGCTGATTCATACTT
Shewanella amazonensis SB2B Sama_0382 -138 4 GAGTGTGAGCTGATTCATACTT
Shewanella loihica PV-4 Shew_3424 -140 4.3 GAGTGTGATCTGATTCATACTT
Shewanella pealeana ATCC 700345 Spea_0425 -268 4 TTATATAATTTAGATCAAGTTT
-160 4.8 AAGTGTGATCGGATTCATACTT
Shewanella halifaxensis HAW-EB4 Shal_0482 -247 3.7 TTATATAATTTAGATCAAGGTT
-139 5 AAATGTGATCGGATTCATACTT
Shewanella piezotolerans WP3 swp_4740 -245 3.9 TTATGTGATTAATCTCAGTGTT
-139 4.9 AAGTGTGATCTGATTCATACTT
Shewanella sediminis HAW-EB3 Ssed_0438 -141 4.4 GAGTGTGATCTGATTCAAACTT
Shewanella woodyi ATCC 51908 Swoo_0285 -139 4.4 GAGTGTGATCTGATTCAAACTT
Position: -282
Score: 4
Sequence: GAGTGTGACGCTCTGCACAAAT
Position: -191
Score: 4.2
Sequence: TATTGTGAAATCGTGCAGAAAA
Locus tag: Ssed_0444
Ssed_0444 -282 4 GAGTGTGACGCTCTGCACAAAT
-191 4.2 TATTGTGAAATCGTGCAGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purH
Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Shewanella oneidensis MR-1 SO0442 -180 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella putrefaciens CN-32 Sputcn32_3401 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp W3-18-1 Sputw3181_0542 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp ANA-3 Shewana3_0441 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-4 Shewmr4_0445 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-7 Shewmr7_3584 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella baltica OS155 Sbal_0420 -195 4 TATTGTGAAATCACGCAGAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0493 -195 3.9 TATTGTGAAATCACACAGAAAA
Shewanella amazonensis SB2B Sama_0395 -194 4 TATTGTGAAATCACGCAGAAAA
Shewanella loihica PV-4 Shew_3412 -182 4 TATTGTGAAATCGCACAGAAAA
Shewanella pealeana ATCC 700345 Spea_0432 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella halifaxensis HAW-EB4 Shal_0488 -182 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella piezotolerans WP3 swp_4724 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sediminis HAW-EB3 Ssed_0444 -282 4 GAGTGTGACGCTCTGCACAAAT
-191 4.2 TATTGTGAAATCGTGCAGAAAA
Shewanella woodyi ATCC 51908 Swoo_0296 -192 3.6 TATTGTGAAATCACATATAAAT
Position: -154
Score: 4.2
Sequence: ATTCATGATCCACTTCACCTAG
Locus tag: Ssed_0457
Ssed_0457 -154 4.2 ATTCATGATCCACTTCACCTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0539
Ortholog function: mechanosensitive ion channel
Shewanella putrefaciens CN-32 Sputcn32_0539 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella putrefaciens CN-32 Sputcn32_0539 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp W3-18-1 Sputw3181_3633 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp W3-18-1 Sputw3181_3633 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp ANA-3 Shewana3_3684 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp ANA-3 Shewana3_3684 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp MR-4 Shewmr4_3509 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp MR-4 Shewmr4_3509 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp MR-7 Shewmr7_0443 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp MR-7 Shewmr7_0443 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella baltica OS155 Sbal_3856 -95 4.5 TTACATGATACGCTTCACACAT
Shewanella baltica OS155 Sbal_3856 -95 4.5 TTACATGATACGCTTCACACAT
Shewanella loihica PV-4 Shew_3394 -144 4.1 TTGCTTGATATGCTTCACGCTA
Shewanella loihica PV-4 Shew_3394 -144 4.1 TTGCTTGATATGCTTCACGCTA
Shewanella pealeana ATCC 700345 Spea_0457 -138 4.1 AAGCTTGATCCTCTTCACGCTA
Shewanella pealeana ATCC 700345 Spea_0457 -138 4.1 AAGCTTGATCCTCTTCACGCTA
Shewanella halifaxensis HAW-EB4 Shal_0532 -137 4 AAGCATGATCCCCTTCACGCTA
Shewanella halifaxensis HAW-EB4 Shal_0532 -137 4 AAGCATGATCCCCTTCACGCTA
Shewanella sediminis HAW-EB3 Ssed_0457 -154 4.2 ATTCATGATCCACTTCACCTAG
Shewanella sediminis HAW-EB3 Ssed_0457 -154 4.2 ATTCATGATCCACTTCACCTAG
Shewanella woodyi ATCC 51908 Swoo_4512 -127 3.9 ATTCATGATCCTCTTCACGCAG
Shewanella woodyi ATCC 51908 Swoo_4512 -127 3.9 ATTCATGATCCTCTTCACGCAG
Position: -92
Score: 4.7
Sequence: AAGTGTGATCGAGCTAACCTTT
Locus tag: Ssed_0461
Ssed_0461 -92 4.7 AAGTGTGATCGAGCTAACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Shewanella oneidensis MR-1 SO4133 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella putrefaciens CN-32 Sputcn32_0543 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp W3-18-1 Sputw3181_3629 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp ANA-3 Shewana3_3680 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-4 Shewmr4_3505 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-7 Shewmr7_0447 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella baltica OS155 Sbal_3852 -229 3.8 GATTAGGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella denitrificans OS217 Sden_3074 -92 4.4 AACTGTGATGAAGTTAACCAAA
Shewanella frigidimarina NCIMB 400 Sfri_3403 -244 4.7 TAACTTGATGTAAATCACGTTA
-92 4.8 ATATGTGATCAAGTTAACCTTA
Shewanella amazonensis SB2B Sama_0412 -92 4.7 ATTCGTGATCCAGTTAACCTTA
Shewanella loihica PV-4 Shew_3390 -92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella pealeana ATCC 700345 Spea_0460 -92 4.7 AAGTGTGATCGGCTTAACCTTT
Shewanella halifaxensis HAW-EB4 Shal_0535 -92 4.6 AAGTGTGATCAGTTTAACCTTT
Shewanella piezotolerans WP3 swp_4702 -310 4.7 ATTTGTGAGTTAGATCATGTTT
-92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella sediminis HAW-EB3 Ssed_0461 -92 4.7 AAGTGTGATCGAGCTAACCTTT
Shewanella sediminis HAW-EB3 Ssed_2504 -84 3.9 CAATGTAATATGCAAAACATTT
Shewanella woodyi ATCC 51908 Swoo_4509 -272 4.9 AAATGTGATGTGGGTCAACAAA
-92 4.7 AAGTGTGATCAAGTTAACCTTA
Position: -331
Score: 4.3
Sequence: TTTTGTGACCCCGTTAGCCTTT
Locus tag: Ssed_0482
Ssed_0482 -331 4.3 TTTTGTGACCCCGTTAGCCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mccA
Ortholog function: cytochrome c, putative
Shewanella pealeana ATCC 700345 Spea_0479 -341 4.2 TTTTGTGACCTCTCTATCCTTT
Shewanella halifaxensis HAW-EB4 Shal_0551 -340 4.3 TTTTGTGACCTCTCTAGCCTTT
Shewanella sediminis HAW-EB3 Ssed_0482 -331 4.3 TTTTGTGACCCCGTTAGCCTTT
Shewanella woodyi ATCC 51908 Swoo_4477 -342 4.2 TTTTGTGACCTCTCTATCCTTT
-87 3.9 AATTGTTAAGTTGTTCAGCTAA
Position: -324
Score: 4
Sequence: TATTGTGACCCACTCAAGATTT
Position: -158
Score: 4.2
Sequence: AAGTGTGCTTTGAAGCAAATTT
Locus tag: Ssed_0493
Ssed_0493 -324 4 TATTGTGACCCACTCAAGATTT
-158 4.2 AAGTGTGCTTTGAAGCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mccA
Ortholog function: cytochrome c, putative
Shewanella pealeana ATCC 700345 Spea_0503 -286 3.9 TTTTGCGATTTAAAAAACGTAA
-264 3.9 AGTTGTGATTTTTATATCTAAA
Shewanella halifaxensis HAW-EB4 Shal_0567 -284 3.8 TTTTGCGATTCAAAAAACGTTA
-262 3.9 AGTTGTGATTTTTATATCTAAA
-159 4.1 AAGTGTGCTGTAGCGCAGATTT
Shewanella piezotolerans WP3 swp_4657 -246 4.1 TTATGTGCTCTAGCGCATGTTT
Shewanella sediminis HAW-EB3 Ssed_0493 -324 4 TATTGTGACCCACTCAAGATTT
-233 3.7 TTTTTTGAAATGTTTAACCTAC
-158 4.2 AAGTGTGCTTTGAAGCAAATTT
Shewanella woodyi ATCC 51908 Swoo_4456 -160 4 AAGTGTGCTTTAGCGCAGATTT
Position: -43
Score: 3.7
Sequence: ATTTCTGACATTAATAATAATA
Locus tag: Ssed_0539
Ssed_0539 -43 3.7 ATTTCTGACATTAATAATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mshH
Ortholog function: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Shewanella oneidensis MR-1 SO4116 -318 4.4 TATTGTAATTTAGTCAACATTT
-132 4.3 AAATGTGACCTAATTGACGTAT
Shewanella putrefaciens CN-32 Sputcn32_0555 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp W3-18-1 Sputw3181_3617 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp ANA-3 Shewana3_3668 -312 4.2 TATTGTAATTTAATCAACATTT
-119 4.2 GGATATGATGGGTTTCACATTT
Shewanella sp MR-4 Shewmr4_3491 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella sp MR-7 Shewmr7_0461 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella denitrificans OS217 Sden_3352 -298 3.8 TCTTGTTATTTAAACAACATTT
-197 4.2 TAATGTGATGCATAGCAGCCTT
Shewanella frigidimarina NCIMB 400 Sfri_3756 -303 4.1 TATTGTTATTTAGACAAAATAA
Shewanella pealeana ATCC 700345 Spea_3773 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella halifaxensis HAW-EB4 Shal_3858 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella woodyi ATCC 51908 Swoo_4422 -345 3.8 AAGTTTTATCTAGTTAACCCTT
Position: -213
Score: 4.2
Sequence: TAATGTTAAATCGATCTCACTT
Locus tag: Ssed_0598
Ssed_0598 -213 4.2 TAATGTTAAATCGATCTCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0543
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO0543 -192 3.7 CGTTATGCGCTAAATCACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3331 -88 4.2 ATTTTTACTCTAATTCACAAAA
Shewanella sp W3-18-1 Sputw3181_0610 -88 4.2 ATTTTTACTCTAATTCACAAAA
Shewanella sp ANA-3 Shewana3_0541 -193 4.1 AGTTATGCGCTAAATCACAAAA
Shewanella sp MR-4 Shewmr4_0542 -192 4 AGTTATGCGCTTAATCACAAAA
Shewanella sp MR-7 Shewmr7_3488 -191 4 AGTTATGCGCTTAATCACAAAA
Shewanella baltica OS155 Sbal_0501 -201 4.8 TGTTGTGCTCTCAATCACAAAA
-88 3.9 AATTTTACCCTGATTCACAAAA
Shewanella denitrificans OS217 Sden_0657 -34 3.9 TAATATGACTAGAGTCAAACAT
Shewanella frigidimarina NCIMB 400 Sfri_3534 -200 4 ATATTTGATCACAAGCACACTC
Shewanella amazonensis SB2B Sama_3164 -240 3.9 CATTGTTACTCACTTCATACAT
-126 3.9 ATTTATGACCATACTCACAGAG
Shewanella loihica PV-4 Shew_0428 -190 4.2 TAGTGTTAACTCGATCAAACAA
Shewanella pealeana ATCC 700345 Spea_3733 -197 4.2 TTTTGCTACATAGATCGCATAT
Shewanella halifaxensis HAW-EB4 Shal_3818 -235 4.7 TTTTGTTACATGGATCGCATAT
Shewanella piezotolerans WP3 swp_0532 -156 4.6 TTTTGTTACACAGATCGCATAT
Shewanella sediminis HAW-EB3 Ssed_0598 -213 4.2 TAATGTTAAATCGATCTCACTT
Shewanella woodyi ATCC 51908 Swoo_4355 -215 3.8 AATTGCTAGATAGATCTCACTT
Position: -210
Score: 3.6
Sequence: ATCCGTGAGGCCTTGAACAATT
Position: -108
Score: 4.1
Sequence: TTTTTTGACTGAAGTCAAACTT
Locus tag: Ssed_0623
Ssed_0623 -210 3.6 ATCCGTGAGGCCTTGAACAATT
-108 4.1 TTTTTTGACTGAAGTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0572
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17)
Shewanella oneidensis MR-1 SO0572 -102 4.4 TATTTTGACTCAAGTCAAAATT
Shewanella putrefaciens CN-32 Sputcn32_3304 -102 4.3 TATTTTGACTAAGGTCAAAATT
Shewanella sp W3-18-1 Sputw3181_0637 -102 4.3 TATTTTGACTAAGGTCAAAATT
Shewanella sp ANA-3 Shewana3_0572 -102 4.4 TATTTTGACTCATGTCAAAAAT
Shewanella sp MR-4 Shewmr4_0573 -102 4.5 TATTTTGACGCATGTCAAAATT
Shewanella sp MR-7 Shewmr7_3457 -102 4.5 TATTTTGACGCATGTCAAAATT
Shewanella baltica OS155 Sbal_0533 -102 4.3 TATTTTGACTCAAGTCAAAAAA
Shewanella denitrificans OS217 Sden_0534 -100 3.7 ATTTTTGACTAGGGTCAATATT
Shewanella frigidimarina NCIMB 400 Sfri_3510 -237 4.2 CATTGTGATCAATGTCATATCA
Shewanella loihica PV-4 Shew_0454 -124 4.3 TATTTTGACGCCAGTCAAAAAA
Shewanella pealeana ATCC 700345 Spea_3709 -110 3.7 AAAAATGACCAATGTCATAATT
Shewanella halifaxensis HAW-EB4 Shal_3794 -110 3.9 TAAAATGATGAGTGTCATAATT
Shewanella piezotolerans WP3 swp_0563 -110 3.6 TTTATTGACGATAGTCAAAAAA
Shewanella sediminis HAW-EB3 Ssed_0623 -108 4.1 TTTTTTGACTGAAGTCAAACTT
Position: -88
Score: 4.8
Sequence: TAGAGTGATCCAGCTCACATAC
Locus tag: Ssed_0706
Ssed_0706 -88 4.8 TAGAGTGATCCAGCTCACATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rarD
Ortholog function: RarD protein
Shewanella pealeana ATCC 700345 Spea_1861 -85 3.9 CAAGGTGATTCAAGTCACACTC
Shewanella halifaxensis HAW-EB4 Shal_2568 -85 4.2 CAGAGTGATTCAAGTCACACTT
Shewanella sediminis HAW-EB3 Ssed_0706 -88 4.8 TAGAGTGATCCAGCTCACATAC
Shewanella woodyi ATCC 51908 Swoo_4258 -44 4.5 CATAGTGATCAATATCACATTC
Position: -164
Score: 3.8
Sequence: AAGTGTGATCTGACGCCGATTT
Position: -103
Score: 3.9
Sequence: AACTTTGAACTTGTTCAAGTAT
Locus tag: Ssed_0791
Ssed_0791 -164 3.8 AAGTGTGATCTGACGCCGATTT
-103 3.9 AACTTTGAACTTGTTCAAGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_3210
Ortholog function: hypothetical protein
Shewanella denitrificans OS217 Sden_3210 -122 4.3 AAGCGTGAACAGCATCACGTAA
Shewanella frigidimarina NCIMB 400 Sfri_3316 -160 4.3 ATAAGTGATCTAGTACTCACTT
-99 4.2 AAACATGATCTGGTTCAAATCA
Shewanella amazonensis SB2B Sama_3031 -165 3.9 TAGAGTGATCCTCTGCAAAGAA
-104 4.8 AATTATGATGCAATTCAAATAA
Shewanella loihica PV-4 Shew_0560 -99 4.1 AACTATGACATTGTTCAAAAAA
Shewanella pealeana ATCC 700345 Spea_3546 -105 4.3 AAGTTTGACTGCGTTCAAATAA
Shewanella halifaxensis HAW-EB4 Shal_3640 -165 3.8 TTACGTGATCGAGCGCTAGTTT
-104 4.3 AAGTTTGACAGTGTTCAAATAT
Shewanella sediminis HAW-EB3 Ssed_0791 -164 3.8 AAGTGTGATCTGACGCCGATTT
-103 3.9 AACTTTGAACTTGTTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_4177 -44 4.5 AAGTTTGAGCTTGTTCAAATAT
Position: -132
Score: 4.4
Sequence: TACTATGATCAAGCTCAAATTT
Locus tag: Ssed_0801
Ssed_0801 -132 4.4 TACTATGATCAAGCTCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: petA
Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Shewanella oneidensis MR-1 SO0608 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella putrefaciens CN-32 Sputcn32_3276 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp W3-18-1 Sputw3181_0665 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp ANA-3 Shewana3_0601 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-4 Shewmr4_0602 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-7 Shewmr7_3428 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella baltica OS155 Sbal_0562 -131 3.7 CACTATGATCTGCTTCTAATTT
-102 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella frigidimarina NCIMB 400 Sfri_3307 -129 3.8 CACTATGATCTGGTTCTAATTT
Shewanella loihica PV-4 Shew_0570 -130 4.1 TACTATGATCTGCTTCTAATTT
-101 3.9 TAATGAGCCCCGCCTCAAATTT
Shewanella pealeana ATCC 700345 Spea_3536 -78 4.2 AACTATGATCTGGTTCTAATTT
Shewanella halifaxensis HAW-EB4 Shal_3630 -128 4.6 AACTATGATCTGGCTCAAATTT
Shewanella piezotolerans WP3 swp_0793 -131 4.2 AACTATGATCTGGTTCTAATTT
Shewanella sediminis HAW-EB3 Ssed_0801 -132 4.4 TACTATGATCAAGCTCAAATTT
Shewanella woodyi ATCC 51908 Swoo_4166 -129 3.8 TACTATGATCTGCTTCTGATTT
Position: -141
Score: 4.1
Sequence: AACTGGTATTTTGATCACATTT
Position: -135
Score: 3.7
Sequence: TATTTTGATCACATTTTCGTTA
Position: -121
Score: 3.9
Sequence: TTTCGTTATTAATGTCACTTAA
Locus tag: Ssed_0809
Ssed_0809 -141 4.1 AACTGGTATTTTGATCACATTT
-135 3.7 TATTTTGATCACATTTTCGTTA
-121 3.9 TTTCGTTATTAATGTCACTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Shewanella oneidensis MR-1 SO0617 -142 4 AACTGGTATTTTGATCACAATT
Shewanella putrefaciens CN-32 Sputcn32_0645 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella sp W3-18-1 Sputw3181_3529 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella sp ANA-3 Shewana3_0610 -142 4 AACTGGTATTTTGATCACAATT
Shewanella sp MR-4 Shewmr4_0611 -142 4 AACTGGTATTTTGATCACAATT
Shewanella sp MR-7 Shewmr7_3419 -308 3.8 AATTGTGTAGTTATTCATATTC
Shewanella baltica OS155 Sbal_0571 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella denitrificans OS217 Sden_3193 -136 4.1 AACTGGTATTTTGATCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_3299 -137 4.1 AACTGGTATTTTGATCACATTT
Shewanella amazonensis SB2B Sama_3011 -142 4 AACTGGTATTTCGATCACAATT
Shewanella loihica PV-4 Shew_0578 -140 3.8 AACTGGTATTTTGATCACGTTT
Shewanella pealeana ATCC 700345 Spea_3516 -138 4.1 AACTGGTATTTTGATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_3610 -138 3.7 AACTGGCATTCTGATCACATTT
Shewanella piezotolerans WP3 swp_0747 -140 4.1 AACTGGTATTTTGATCACATTT
Shewanella sediminis HAW-EB3 Ssed_0809 -141 4.1 AACTGGTATTTTGATCACATTT
-121 3.9 TTTCGTTATTAATGTCACTTAA
Shewanella woodyi ATCC 51908 Swoo_0655 -172 4.3 ATATGTGCTGCTGATCTTATTT
Position: -321
Score: 3.9
Sequence: AAACTCAATATAGTTCACATTT
Position: -147
Score: 3.9
Sequence: GGATATGATCTAAATCACACTG
Locus tag: Ssed_0816
Ssed_0816 -321 3.9 AAACTCAATATAGTTCACATTT
-147 3.9 GGATATGATCTAAATCACACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3987
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3987 -83 3.9 TCTTGTGAGCGAGTTCACGCCT
Shewanella putrefaciens CN-32 Sputcn32_0679 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp W3-18-1 Sputw3181_3492 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp ANA-3 Shewana3_0651 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp MR-4 Shewmr4_0652 -83 4.1 TCTTGTGACCTAGTTCACGCCT
Shewanella sp MR-7 Shewmr7_3370 -83 4.1 TCTTGTGACCTAGTTCACGCCT
Shewanella baltica OS155 Sbal_0787 -277 3.7 TAAAGCGATATATGTAACAAAC
Shewanella amazonensis SB2B Sama_0602 -307 4.1 AAATTGAATATGGATCACATTT
Shewanella loihica PV-4 Shew_0778 -147 5.1 AGATTTGATGTAAATCACATTT
-82 4.4 TAAAGTGACCTGTCTCACACCT
Shewanella pealeana ATCC 700345 Spea_0734 -147 4.1 CGATATGATTTGGATCACTTTT
-82 4.2 AATAGTGATATACATCACAAGG
Shewanella halifaxensis HAW-EB4 Shal_0787 -81 4.9 AATAGTGATGCAGATCACACTG
Shewanella piezotolerans WP3 swp_4346 -4 4.6 TACTGTGATCGATATCACGTCT
Shewanella sediminis HAW-EB3 Ssed_0816 -321 3.9 AAACTCAATATAGTTCACATTT
-147 3.9 GGATATGATCTAAATCACACTG
Shewanella woodyi ATCC 51908 Swoo_3763 -82 4.3 TTGTGTGACCTGCATCACGCCA
Position: -117
Score: 4.1
Sequence: TAACGTGTTCCTTGTCACGAAT
Locus tag: Ssed_0879
Ssed_0879 -117 4.1 TAACGTGTTCCTTGTCACGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cadC
Ortholog function: transcriptional regulator-related protein
Shewanella oneidensis MR-1 SO0936 -117 4.6 TTTATTGATGTAATTCACAGAT
Shewanella sp ANA-3 Shewana3_3347 -118 4.6 TTTATTGATGTGTTTCACAGAT
Shewanella sp MR-4 Shewmr4_0779 -118 4.5 TTTATTGATGCATTTCACAGAT
Shewanella sp MR-7 Shewmr7_3244 -118 4.5 TTTATTGATGCATTTCACAGAT
Shewanella loihica PV-4 Shew_0757 -115 4.3 TTATGTGCTGATTGTCACGAAA
Shewanella halifaxensis HAW-EB4 Shal_0849 -117 4.4 TAGTGTGCTAGACCTCACGAAA
Shewanella piezotolerans WP3 swp_4239 -248 4.2 TAACGTGCTAAAGCTCACGAAA
Shewanella sediminis HAW-EB3 Ssed_0879 -117 4.1 TAACGTGTTCCTTGTCACGAAT
Shewanella woodyi ATCC 51908 Swoo_0881 -116 3.7 ATATGAGCGCTAAATCACGCTT
Position: -349
Score: 4.1
Sequence: TTTTGCGAACAAAATCACACTG
Locus tag: Ssed_0882
Ssed_0882 -349 4.1 TTTTGCGAACAAAATCACACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0939
Ortholog function: split-soret diheme cytochrome c
Shewanella oneidensis MR-1 SO0939 -382 4.3 TACTGTGATCCCGTTAACCCAA
-217 4.6 TATCGTGCCTTCGCTCACATTA
Shewanella putrefaciens CN-32 Sputcn32_0879 -388 4.4 TACTGTGATCTTGCTAACCCAA
Shewanella sp W3-18-1 Sputw3181_3294 -388 4.4 TACTGTGATCTTGCTAACCCAA
-253 3.5 AAATGGATTTAAATTCACATAA
Shewanella sp ANA-3 Shewana3_3344 -384 4.3 TACTGTGATCCCGTTAACCCAA
-217 3.8 TAATGTGCGCTGCCGCAAATTG
Shewanella sp MR-4 Shewmr4_0782 -383 4.3 TACTGTGATCCCGTTAACCCAA
-217 4 TAATGTGCGTTGATGCACATTG
Shewanella sp MR-7 Shewmr7_3241 -383 4.3 TACTGTGATCCCGTTAACCCAA
-217 3.9 TAATGTGCGCAGGCACACATTG
Shewanella loihica PV-4 Shew_0759 -246 4.1 TAGAGTGATCAGCTTCACATCG
Shewanella sediminis HAW-EB3 Ssed_0882 -349 4.1 TTTTGCGAACAAAATCACACTG
Position: -147
Score: 4.7
Sequence: CAGTGTGATTTTGTTCGCAAAA
Locus tag: Ssed_0883
Ssed_0883 -147 4.7 CAGTGTGATTTTGTTCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cadC
Ortholog function: transcriptional regulator-related protein
Shewanella oneidensis MR-1 SO0940 -246 4.3 TAATGTGAGCGAAGGCACGATA
Shewanella sp MR-4 Shewmr4_0783 -246 3.8 CAATGTGCATCAACGCACATTA
Shewanella sp MR-7 Shewmr7_3240 -246 3.8 CAATGTGTGCCTGCGCACATTA
Shewanella baltica OS155 Sbal_0833 -75 4 TTGGGTTAGCAAGATCACATTA
Shewanella frigidimarina NCIMB 400 Sfri_3632 -334 4.6 AAATGTGATTCAAAGCAGATAA
-234 4.3 TTTCATGATGTAAGTCTCATTA
-156 5 TGACGTGATATCGCTCACAAAT
Shewanella loihica PV-4 Shew_0760 -234 3.9 CGATGTGAAGCTGATCACTCTA
Shewanella pealeana ATCC 700345 Spea_3438 -227 4.2 TTTCATGAACGATGTCACATTA
-149 3.8 GAGTGTGACTAACGTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3519 -227 4.6 TTCTGTGACCGATAGCACATTA
-149 4.4 CTGTGTGATTAACCTCTCATTT
Shewanella piezotolerans WP3 swp_4010 -258 4.3 TTTATTGATCTAGATCTAATAA
Shewanella sediminis HAW-EB3 Ssed_0883 -147 4.7 CAGTGTGATTTTGTTCGCAAAA
Shewanella woodyi ATCC 51908 Swoo_0885 -232 4.2 AATGGTGAGCTGGATCATGTTA
-145 4.5 CAATGTGATCCTCTTCGCAAAC
Position: -148
Score: 3.8
Sequence: ATACGTTATTCCAATTACATTG
Locus tag: Ssed_0917
Ssed_0917 -148 3.8 ATACGTTATTCCAATTACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1064
Ortholog function: FOG: WD40 repeat
Shewanella denitrificans OS217 Sden_2910 -4 3.8 ATTCGTGAACTTGCGCAACATT
Shewanella sediminis HAW-EB3 Ssed_0917 -148 3.8 ATACGTTATTCCAATTACATTG
Position: -96
Score: 3.9
Sequence: CAATGTAATTGGAATAACGTAT
Locus tag: Ssed_0918
Ssed_0918 -96 3.9 CAATGTAATTGGAATAACGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fkpA
Ortholog function: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
Shewanella oneidensis MR-1 SO1065 -119 4.3 TAGAGTGAAATTAATCACAGTT
Shewanella sp ANA-3 Shewana3_0903 -120 4.4 TAGAGTGAGATTAATCACAGTT
Shewanella sp MR-4 Shewmr4_3034 -120 4.4 TAGAGTGAGATTAATCACAGTT
Shewanella sp MR-7 Shewmr7_0940 -120 4.4 TAGAGTGAGATTAATCACAGTT
Shewanella halifaxensis HAW-EB4 Shal_0881 -99 4.1 TAATCTGATTGGAATAACCTAT
Shewanella sediminis HAW-EB3 Ssed_0918 -96 3.9 CAATGTAATTGGAATAACGTAT
Shewanella woodyi ATCC 51908 Swoo_0968 -95 4.2 TAATGTAATTGGAATATCATAT
Position: -113
Score: 4.8
Sequence: AAATGTGGTGTTGCTCACACTT
Locus tag: Ssed_0930
Ssed_0930 -113 4.8 AAATGTGGTGTTGCTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Shewanella oneidensis MR-1 SO3981 -174 3.7 AAGTTTGCGCTAGATCAAAATG
-151 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_0684 -114 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3487 -114 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp ANA-3 Shewana3_0657 -138 3.7 AAGTTTGCGCTAGATCAAAATG
-115 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp MR-4 Shewmr4_0658 -139 3.7 AAGTTTGCGCTAGATCAAAATG
-116 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp MR-7 Shewmr7_3364 -139 3.7 AAGTTTGCGCTAGATCAAAATG
-116 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella baltica OS155 Sbal_0793 -121 3.7 AAGTTTGCGCTAGATCAAAATG
-98 4.5 AAAGGTGTTGTTGTTCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_0621 -140 3.9 AAACAGGATGTATCTCACAGTT
Shewanella amazonensis SB2B Sama_0647 -112 4 GGATGTGTTATTGTTCACACTT
Shewanella loihica PV-4 Shew_0843 -136 3.9 AAACTTGAGGCAGATCATAATG
-113 4.4 GAATGTGTTGTTGGTCACATTT
Shewanella pealeana ATCC 700345 Spea_0830 -109 4 GAACGTGTTGTTGCTCACACTT
-81 3.8 ATTTGTTAATGTAATCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_0885 -111 4.3 GAATGTGTTGTTGCTCACACTT
Shewanella sediminis HAW-EB3 Ssed_0930 -113 4.8 AAATGTGGTGTTGCTCACACTT
Shewanella woodyi ATCC 51908 Swoo_0971 -112 4.8 AAACGTGTTGTTGCTCACATTT
Position: -154
Score: 4.6
Sequence: AAGTGTGAGCAACACCACATTT
Locus tag: Ssed_0931
Ssed_0931 -154 4.6 AAGTGTGAGCAACACCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: cytochrome c552 precursor (EC 1.7.2.2)
Shewanella oneidensis MR-1 SO3980 -149 3.9 AAGTGTGAACAACAACACTATT
-126 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella putrefaciens CN-32 Sputcn32_0685 -149 3.9 AAGTGTGAACAACAACACTATT
-126 4.1 CATTTTGATCTGGCGCAAACTT
Shewanella sp W3-18-1 Sputw3181_3486 -149 3.9 AAGTGTGAACAACAACACTATT
-126 4.1 CATTTTGATCTGGCGCAAACTT
Shewanella sp ANA-3 Shewana3_0658 -131 3.9 AAGTGTGAACAACAACACTATT
-108 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella sp MR-4 Shewmr4_0659 -131 3.9 AAGTGTGAACAACAACACTATT
-108 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella sp MR-7 Shewmr7_3363 -131 3.9 AAGTGTGAACAACAACACTATT
-108 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella baltica OS155 Sbal_0794 -149 4.4 AAATGTGAACAACAACACCTTT
-126 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella loihica PV-4 Shew_0844 -156 4.5 AAATGTGACCAACAACACATTC
-133 4.2 CATTATGATCTGCCTCAAGTTT
Shewanella pealeana ATCC 700345 Spea_0831 -183 4 ATACTTGATTACATTAACAAAT
-155 3.8 AAGTGTGAGCAACAACACGTTC
-71 4.1 ATAAGTGATTAAATTCAACCTT
Shewanella halifaxensis HAW-EB4 Shal_0886 -152 4.2 AAGTGTGAGCAACAACACATTC
Shewanella piezotolerans WP3 swp_3958 -150 4 AAATGTGAGCAACAACACGTTC
Shewanella sediminis HAW-EB3 Ssed_0931 -154 4.6 AAGTGTGAGCAACACCACATTT
-131 3.9 CATTTTGATCTACCGCATACTT
Shewanella woodyi ATCC 51908 Swoo_0972 -154 4.4 AAATGTGAGCAACAACACGTTT
Position: -344
Score: 4
Sequence: ATTTGTGATATAGATCTATATC
Position: -254
Score: 3.8
Sequence: ATTTTTGTTCTACATCAATAAA
Locus tag: Ssed_0951
Ssed_0951 -344 4 ATTTGTGATATAGATCTATATC
-254 3.8 ATTTTTGTTCTACATCAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: arginine pathway regulatory protein ArgR, repressor of arg regulon
Shewanella oneidensis MR-1 SO0769 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella putrefaciens CN-32 Sputcn32_3220 -259 4.2 ATGTGTGACATGGATCTAGTTT
Shewanella sp W3-18-1 Sputw3181_0721 -259 4.2 ATGTGTGACATGGATCTAGTTT
Shewanella sp ANA-3 Shewana3_3510 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella sp MR-4 Shewmr4_3340 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella sp MR-7 Shewmr7_0613 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella baltica OS155 Sbal_0608 -270 4.5 ATGTGTGACATGGATCTAATTT
Shewanella amazonensis SB2B Sama_0671 -262 4 ATTTGTGAGGTAGATCCTCAAA
Shewanella loihica PV-4 Shew_0866 -282 4.6 TTATGTGATATAGATCTAGATT
Shewanella piezotolerans WP3 swp_4101 -140 3.8 ATTTATACTCTACATCATATTT
Shewanella sediminis HAW-EB3 Ssed_0951 -254 3.8 ATTTTTGTTCTACATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_1001 -311 4.5 TTTTGTGATGTAGGTCTACATT
Position: -136
Score: 4.1
Sequence: TTTATTGATGTAGAACAAAAAT
Position: -46
Score: 3.7
Sequence: GATATAGATCTATATCACAAAT
Locus tag: Ssed_0952
Ssed_0952 -136 4.1 TTTATTGATGTAGAACAAAAAT
-46 3.7 GATATAGATCTATATCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdh
Ortholog function: malate dehydrogenase (EC 1.1.1.37)
Shewanella oneidensis MR-1 SO0770 -47 4.3 AAATTAGATCCATGTCACACAT
Shewanella putrefaciens CN-32 Sputcn32_3219 -46 4 AAACTAGATCCATGTCACACAT
Shewanella sp W3-18-1 Sputw3181_0722 -46 4 AAACTAGATCCATGTCACACAT
Shewanella sp ANA-3 Shewana3_3509 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella sp MR-4 Shewmr4_3339 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella sp MR-7 Shewmr7_0614 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella baltica OS155 Sbal_0609 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella frigidimarina NCIMB 400 Sfri_3173 -45 4.2 AATTTAGATCTATGTCACAAAC
Shewanella amazonensis SB2B Sama_0672 -46 3.8 TTTGAGGATCTACCTCACAAAT
Shewanella loihica PV-4 Shew_0867 -47 4.5 AATCTAGATCTATATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_0903 -46 3.9 AAGATGGATCTGAATCACAAAA
Shewanella piezotolerans WP3 swp_4100 -46 3.9 AAAACAGATCTAAATCACAAAA
Shewanella sediminis HAW-EB3 Ssed_0952 -136 4.1 TTTATTGATGTAGAACAAAAAT
Shewanella woodyi ATCC 51908 Swoo_1002 -47 3.8 AATGTAGACCTACATCACAAAA
Position: -160
Score: 4.6
Sequence: TAAAGTGATCCACTACACACTT
Locus tag: Ssed_0973
Ssed_0973 -160 4.6 TAAAGTGATCCACTACACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purT
Ortholog function: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
Shewanella oneidensis MR-1 SO3613 -161 3.8 TAGCTTGATCAAAAACACAGTT
Shewanella putrefaciens CN-32 Sputcn32_1001 -119 3.8 TAGCTTGATCAAAAACACAGTT
Shewanella sp W3-18-1 Sputw3181_3164 -119 3.8 TAGCTTGATCAAAAACACAGTT
Shewanella sp ANA-3 Shewana3_3197 -121 3.9 TAGCTTGATCGAAAACACAGTT
Shewanella sp MR-4 Shewmr4_3020 -121 3.9 TAGCTTGATCGAAAACACAGTT
Shewanella sp MR-7 Shewmr7_3101 -121 3.9 TAGCTTGATCGAAAACACAGTT
Shewanella pealeana ATCC 700345 Spea_0871 -176 4.4 AAGAGTGATCTCGCCCACACTT
Shewanella halifaxensis HAW-EB4 Shal_0924 -169 4.5 AGTAGTGATCTCGTGCACACAT
Shewanella piezotolerans WP3 swp_4077 -147 4.1 CAGCGTGATCTGCCGCACGTTT
Shewanella sediminis HAW-EB3 Ssed_0973 -160 4.6 TAAAGTGATCCACTACACACTT
Position: -140
Score: 4.3
Sequence: ATCTGTGATGCAAGTCGCAATC
Locus tag: Ssed_1121
Ssed_1121 -140 4.3 ATCTGTGATGCAAGTCGCAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sbal_1323
Ortholog function: HTH-type transcriptional regulator BetI
Shewanella frigidimarina NCIMB 400 Sfri_1948 -111 4.9 TGTTGTGATCTATATCAAGTTA
Shewanella pealeana ATCC 700345 Spea_1009 -164 4.1 ATGCGTGAGGTGAGTCACGCTT
-135 3.7 AAGCTTGATCGTTATAACCCTA
Shewanella halifaxensis HAW-EB4 Shal_1059 -163 4.3 ATCTGTGAACCTTGTCGCATTT
Shewanella piezotolerans WP3 swp_3809 -141 4.7 TTCTGTGATTCAGGTCGCAAAT
Shewanella sediminis HAW-EB3 Ssed_1121 -140 4.3 ATCTGTGATGCAAGTCGCAATC
Position: -96
Score: 3.7
Sequence: ATAGGTGAGATAATCCACAATC
Locus tag: Ssed_1127
Ssed_1127 -96 3.7 ATAGGTGAGATAATCCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1326
Ortholog function: COG1242: Predicted Fe-S oxidoreductase
Shewanella oneidensis MR-1 SO1326 -294 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella putrefaciens CN-32 Sputcn32_1137 -293 4.3 AATAGTGATTTTTATTGCAAAT
-224 4.6 ATTTGTGAGGTAGATCGCTAAA
Shewanella sp W3-18-1 Sputw3181_3027 -293 4.3 AATAGTGATTTTTATTGCAAAT
-224 4.3 GTTTGTGATGTAGATCGCTAAA
Shewanella sp ANA-3 Shewana3_3048 -294 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella sp MR-4 Shewmr4_2870 -55 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella sp MR-7 Shewmr7_2952 -55 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella baltica OS155 Sbal_1179 -293 3.9 AATAGTGATTTTTATTGCAAAC
-225 4.2 TGATGTGAGCAATATCTCAATG
-193 4.3 TAATTTGAGGATGCGCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2950 -128 3.9 TTTTTTGAGTTTGTGCACAACT
Shewanella loihica PV-4 Shew_1033 -148 4.4 AAAAGTGATTTTTATTGCATAT
-127 4 TACAGTGAATTATTTAACAAAT
Shewanella pealeana ATCC 700345 Spea_1014 -303 3.9 TAAATTGACCTGTATAACCTTA
-201 4 TAAAGTGATTTTTTTTGCAGAT
Shewanella halifaxensis HAW-EB4 Shal_1062 -210 4 TAAAGTGATTTTTCTTGCAGAT
Shewanella piezotolerans WP3 swp_3802 -111 3.8 TTATTTGAGCTAGCGCTAATAA
Shewanella woodyi ATCC 51908 Swoo_1222 -229 3.8 AAATATGAGTTCTATTGCAAAT
Position: -103
Score: 4.3
Sequence: TCATTTGACAAAGATCACAAAT
Locus tag: Ssed_1130
Ssed_1130 -103 4.3 TCATTTGACAAAGATCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaC
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1 SO1329 -162 4.7 TGTATTGATCCAGATCACAAAT
Shewanella putrefaciens CN-32 Sputcn32_1140 -101 4.7 TGTATTGATCCAGATCACAAAT
Shewanella sp W3-18-1 Sputw3181_3024 -101 4.7 TGTATTGATCCAGATCACAAAT
Shewanella sp ANA-3 Shewana3_3045 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella sp MR-4 Shewmr4_2867 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella sp MR-7 Shewmr7_2949 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella baltica OS155 Sbal_1182 -101 4.7 TAGATTGATCCAGATCACAAAT
Shewanella denitrificans OS217 Sden_2784 -157 4.8 TGAATTGATCTAGATCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2947 -158 4.4 TCTATTGATCTAAATCACAAAT
Shewanella amazonensis SB2B Sama_0861 -102 4.2 TGAATTGATTCAGATCACGTTA
Shewanella loihica PV-4 Shew_1036 -162 4.6 TCATTTGACTTAGATCACAAAT
Shewanella pealeana ATCC 700345 Spea_1019 -100 4.6 TCATTTGACTTAGATCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_1065 -99 5.1 TTATTTGACTTAGATCACAAAT
Shewanella piezotolerans WP3 swp_3798 -98 4.6 TCATTTGACTTAGATCACAAAT
Shewanella sediminis HAW-EB3 Ssed_1130 -103 4.3 TCATTTGACAAAGATCACAAAT
Shewanella woodyi ATCC 51908 Swoo_1225 -96 4.3 TCATTTGACTAAGATCACAAAT
Position: -170
Score: 3.4
Sequence: TAATGCAATTGGTATTATAATT
Position: -124
Score: 3.4
Sequence: GAAGTTGATCTACTTCATAGTT
Locus tag: Ssed_1165
Ssed_1165 -170 3.4 TAATGCAATTGGTATTATAATT
-124 3.4 GAAGTTGATCTACTTCATAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella oneidensis MR-1 SO1363 -124 4.2 TAAAGTGATCTTTCTCTAAGAT
Shewanella putrefaciens CN-32 Sputcn32_1174 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp W3-18-1 Sputw3181_2990 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp MR-4 Shewmr4_2832 -124 4 TAAGGTGATCTCCCTCTAAGAT
Shewanella sp MR-7 Shewmr7_2914 -124 3.6 CAAGGTGATCTCTCTCTAAGAT
Shewanella baltica OS155 Sbal_1216 -124 4.1 TAAGGTGATCGTTCTCTAATAT
Shewanella frigidimarina NCIMB 400 Sfri_3609 -125 4 GAAGGTGATGTGGCTCATAAAA
Shewanella amazonensis SB2B Sama_0895 -113 3.6 TAAGATGATCTGCTTCAAGGAA
Shewanella loihica PV-4 Shew_1069 -125 4.5 TAATTTGATCCGCTTCATAGTT
Shewanella pealeana ATCC 700345 Spea_1055 -125 4.5 AAAAGTGATCTCTTTCATAGTT
Shewanella halifaxensis HAW-EB4 Shal_1103 -96 4.3 TAAGGTGATCTCTTTCATGTTT
Shewanella piezotolerans WP3 swp_3762 -42 4.4 TAAGGTGATCTCTTTCATAGTT
Shewanella sediminis HAW-EB3 Ssed_1165 -170 3.4 TAATGCAATTGGTATTATAATT
Shewanella woodyi ATCC 51908 Swoo_1260 -125 4.2 GAATTTGATCTGTCTCAAACTT
Position: -32
Score: 3.4
Sequence: AATTTCGATATTTATAAATTTA
Position: 27
Score: 3.4
Sequence: TATTCTGATGAGTTGCAGCTAA
Locus tag: Ssed_1166
Ssed_1166 -32 3.4 AATTTCGATATTTATAAATTTA
27 3.4 TATTCTGATGAGTTGCAGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcr
Ortholog function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Shewanella oneidensis MR-1 SO1364 -124 4.2 TAAAGTGATCTTTCTCTAAGAT
Shewanella putrefaciens CN-32 Sputcn32_1175 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp W3-18-1 Sputw3181_2989 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp MR-4 Shewmr4_2831 -124 4 TAAGGTGATCTCCCTCTAAGAT
Shewanella sp MR-7 Shewmr7_2913 -124 3.6 CAAGGTGATCTCTCTCTAAGAT
Shewanella baltica OS155 Sbal_1217 -124 4.1 TAAGGTGATCGTTCTCTAATAT
Shewanella frigidimarina NCIMB 400 Sfri_3608 -125 4 GAAGGTGATGTGGCTCATAAAA
Shewanella amazonensis SB2B Sama_0896 -113 3.6 TAAGATGATCTGCTTCAAGGAA
Shewanella loihica PV-4 Shew_1070 -125 4.5 TAATTTGATCCGCTTCATAGTT
Shewanella pealeana ATCC 700345 Spea_1056 -125 4.5 AAAAGTGATCTCTTTCATAGTT
Shewanella halifaxensis HAW-EB4 Shal_1104 -96 4.3 TAAGGTGATCTCTTTCATGTTT
Shewanella piezotolerans WP3 swp_3761 -42 4.4 TAAGGTGATCTCTTTCATAGTT
Shewanella sediminis HAW-EB3 Ssed_1166 -170 3.4 TAATGCAATTGGTATTATAATT
Shewanella woodyi ATCC 51908 Swoo_1261 -125 4.2 GAATTTGATCTGTCTCAAACTT
Position: -76
Score: 4.6
Sequence: AAACGTGATTTAGATCACGACT
Locus tag: Ssed_1169
Ssed_1169 -76 4.6 AAACGTGATTTAGATCACGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-2
Ortholog function: Ribosome hibernation protein YfiA
Shewanella oneidensis MR-1 SO3422 -78 4.7 AAGTGTGATTTAACTCTCGTTT
Shewanella putrefaciens CN-32 Sputcn32_2740 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp W3-18-1 Sputw3181_1272 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp ANA-3 Shewana3_1133 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-4 Shewmr4_1132 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-7 Shewmr7_1203 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella baltica OS155 Sbal_1221 -77 5.2 AAATGTGATCTAGATCTCGTTT
Shewanella denitrificans OS217 Sden_2746 -77 4.8 AAGTGTGACTTTGATCACGCTT
-38 4.1 TAATCTGAAGTTAAGCACATAA
Shewanella frigidimarina NCIMB 400 Sfri_2912 -77 5 AAGTGTGATGCAGATCACTATT
Shewanella amazonensis SB2B Sama_0899 -78 4.3 AAACGTGATTTTACTCACGACT
Shewanella loihica PV-4 Shew_1073 -76 4.6 AAAGTTGATCTAGATCACGTTT
Shewanella pealeana ATCC 700345 Spea_1060 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella halifaxensis HAW-EB4 Shal_4284 -83 4.6 AAACATGACCTAGATCACACTA
-58 3.8 TAATGTGATTGGACTATTGTAA
Shewanella halifaxensis HAW-EB4 Shal_1108 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella piezotolerans WP3 swp_3757 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella sediminis HAW-EB3 Ssed_1169 -222 3.8 TTTTGAGAGGCAAATAAAAAAA
-76 4.6 AAACGTGATTTAGATCACGACT
Shewanella woodyi ATCC 51908 Swoo_1264 -76 4.5 AAACGTGATCAAGATCACGACT
Position: -236
Score: 4.9
Sequence: AGTCGTGATCTAAATCACGTTT
Position: -90
Score: 4.1
Sequence: TTTTTTTATTTGCCTCTCAAAA
Locus tag: Ssed_1170
Ssed_1170 -236 4.9 AGTCGTGATCTAAATCACGTTT
-90 4.1 TTTTTTTATTTGCCTCTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3421
Ortholog function: b-type cytochrome, putative
Shewanella oneidensis MR-1 SO3421 -244 4.2 AAACGAGAGTTAAATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_2739 -242 4.8 AAACGAGATCTAAATCACAAAA
Shewanella sp W3-18-1 Sputw3181_1273 -242 4.8 AAACGAGATCTAAATCACAAAA
Shewanella sp ANA-3 Shewana3_1134 -241 4.9 AAACGAGATCTAAATCACATTT
Shewanella sp MR-4 Shewmr4_1133 -241 4.9 AAACGAGATCTAAATCACATTT
Shewanella sp MR-7 Shewmr7_1204 -241 4.9 AAACGAGATCTAAATCACATTT
Shewanella baltica OS155 Sbal_1222 -244 5 AAACGAGATCTAGATCACATTT
Shewanella denitrificans OS217 Sden_2745 -291 4.7 AAGCGTGATCAAAGTCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2911 -383 5.2 AATAGTGATCTGCATCACACTT
Shewanella amazonensis SB2B Sama_0900 -234 4.2 AGTCGTGAGTAAAATCACGTTT
Shewanella loihica PV-4 Shew_1074 -208 4.9 AAACGTGATCTAGATCAACTTT
Shewanella pealeana ATCC 700345 Spea_1061 -255 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella halifaxensis HAW-EB4 Shal_1109 -255 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella piezotolerans WP3 swp_3756 -366 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella sediminis HAW-EB3 Ssed_1170 -236 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella woodyi ATCC 51908 Swoo_1265 -234 4.9 AGTCGTGATCTTGATCACGTTT
Position: -238
Score: 4.4
Sequence: CCATGTGACGCAGATCACAGTT
Position: -97
Score: 4.2
Sequence: AAATAAGATGTAGAACACATTT
Locus tag: Ssed_1186
Ssed_1186 -238 4.4 CCATGTGACGCAGATCACAGTT
-97 4.2 AAATAAGATGTAGAACACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phk
Ortholog function: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shewanella oneidensis MR-1 SO3542 -95 4.2 AATTTGGATGCAGAACACATTT
Shewanella putrefaciens CN-32 Sputcn32_1051 -234 4 TCATGTGATCAAGCCTACATTT
-95 4.1 AATTTGGATGTAGGGCACATTT
Shewanella sp W3-18-1 Sputw3181_3114 -234 4 TCATGTGATCAAGCCTACATTT
-95 4.1 AATTTGGATGTAGGGCACATTT
Shewanella sp ANA-3 Shewana3_3145 -95 4 AATTTGGATGCAGGGCACATTT
Shewanella sp MR-4 Shewmr4_2965 -95 4.3 AATTTGGATGTAGAACACATTT
Shewanella sp MR-7 Shewmr7_3047 -95 4.3 AATTTGGATGTAGAACACATTT
Shewanella baltica OS155 Sbal_1046 -235 4.4 TCATGTGATCAAGCTCGCGTTT
-96 4.1 AATTTGGATGTAGGGCACATTT
Shewanella denitrificans OS217 Sden_2731 -233 5 CTTAGTGATCCAGTTCACATTA
-94 3.7 AAGTTAGATCGGGGACACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2898 -233 4.5 ACAAGTGATATCCATCACACTT
-95 3.8 AAATTAGATAAAGGCCACATTA
Shewanella amazonensis SB2B Sama_0915 -240 4.1 ACTCGTGATCAAGCTCACGGTT
-99 4.1 AATTTGGATGTGGGGCACATTT
Shewanella loihica PV-4 Shew_1091 -238 4.6 CCATGTGATACAGATCACAGTT
-97 4 AAATAAGATATTGAACACATTT
Shewanella pealeana ATCC 700345 Spea_1076 -235 3.9 CTGAGCGATATAGATCACAGTT
Shewanella halifaxensis HAW-EB4 Shal_1124 -56 4.3 TATAGTGAGTTATATAAAATTT
Shewanella piezotolerans WP3 swp_3738 -237 4.5 CTGAGTGATACAGATCACACAT
-96 3.8 AAATAAGATACAGGACACATTT
Shewanella sediminis HAW-EB3 Ssed_1186 -238 4.4 CCATGTGACGCAGATCACAGTT
-97 4.2 AAATAAGATGTAGAACACATTT
Shewanella woodyi ATCC 51908 Swoo_1282 -238 4.4 TCGCGTGATCACGATCACACTT
-97 3.8 AAACAAGATATAGAACACATTT
Position: -214
Score: 4.2
Sequence: AACTGTGATCTGCGTCACATGG
Locus tag: Ssed_1187
Ssed_1187 -214 4.2 AACTGTGATCTGCGTCACATGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3541
Ortholog function: sodium:alanine symporter family protein
Shewanella baltica OS155 Sbal_1047 -220 3.9 AAACGCGAGCTTGATCACATGA
Shewanella denitrificans OS217 Sden_2730 -140 4.6 TAATGTGAACTGGATCACTAAG
Shewanella frigidimarina NCIMB 400 Sfri_2897 -306 4.2 AAGTGTGATGGATATCACTTGT
Shewanella loihica PV-4 Shew_1092 -210 4.4 AACTGTGATCTGTATCACATGG
Shewanella pealeana ATCC 700345 Spea_1077 -207 4.1 AACTGTGATCTATATCGCTCAG
Shewanella piezotolerans WP3 swp_3737 -210 4.5 ATGTGTGATCTGTATCACTCAG
Shewanella sediminis HAW-EB3 Ssed_1187 -214 4.2 AACTGTGATCTGCGTCACATGG
Shewanella woodyi ATCC 51908 Swoo_1283 -215 4.2 AAGTGTGATCGTGATCACGCGA
Position: -145
Score: 5.1
Sequence: AAAGGTGATCGATATCACATAT
Locus tag: Ssed_1323
Ssed_1323 -145 5.1 AAAGGTGATCGATATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_1222
Ortholog function: hypothetical protein
Shewanella loihica PV-4 Shew_1222 -66 5 TAGTGTGATGCAGCTCTCAATA
Shewanella pealeana ATCC 700345 Spea_3260 -217 3.7 TTCAGTGATTTATATCGCCACT
-121 4.4 AAAGGTGAGCTCGATCACAAAC
Shewanella halifaxensis HAW-EB4 Shal_3336 -216 4.5 TTAAGTGATTTGTATCGCCATA
-119 4.8 AATAGTGAGGTGGGTCACAAAT
Shewanella piezotolerans WP3 swp_1085 -105 4.5 AAAGGTGAACTAGATCACAAAG
Shewanella sediminis HAW-EB3 Ssed_1323 -145 5.1 AAAGGTGATCGATATCACATAT
Shewanella woodyi ATCC 51908 Swoo_3332 -69 4 GAAGGTGATTAATATCACGTTA
Position: -217
Score: 3.8
Sequence: TATTGTGAAGTCATCCGGATAT
Locus tag: Ssed_1333
Ssed_1333 -217 3.8 TATTGTGAAGTCATCCGGATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purE
Ortholog function: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Shewanella oneidensis MR-1 SO3554 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3554 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella putrefaciens CN-32 Sputcn32_1041 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1041 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3124 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3124 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp ANA-3 Shewana3_3155 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3155 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2975 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2975 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3057 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3057 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella baltica OS155 Sbal_1036 -139 3.8 TGATATGAAATTGTTCGCAGTT
-95 4.1 TTTCGTTATATACTTAACAGAA
Shewanella denitrificans OS217 Sden_1224 -315 3.7 AATTCTGACTCATCTTAAATTA
Shewanella amazonensis SB2B Sama_1064 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1064 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella sediminis HAW-EB3 Ssed_1333 -217 3.8 TATTGTGAAGTCATCCGGATAT
Shewanella woodyi ATCC 51908 Swoo_3321 -288 3.7 TCCAGCGACTTAGATCACATTT
Position: -233
Score: 4.1
Sequence: GTAAGTGCTACGCATCACATTT
Locus tag: Ssed_1334
Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3553
Ortholog function: putative sulfate permease
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella baltica OS155 Sbal_1037 -139 3.8 TGATATGAAATTGTTCGCAGTT
-95 4.1 TTTCGTTATATACTTAACAGAA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella woodyi ATCC 51908 Swoo_3320 -288 3.7 TCCAGCGACTTAGATCACATTT
Shewanella woodyi ATCC 51908 Swoo_3320 -288 3.7 TCCAGCGACTTAGATCACATTT
Position: -273
Score: 4.4
Sequence: AAATGTGATGCGTAGCACTTAC
Locus tag: Ssed_1335
Ssed_1335 -273 4.4 AAATGTGATGCGTAGCACTTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3551
Ortholog function: RNA polymerase sigma-70 factor, ECF subfamily
Shewanella oneidensis MR-1 SO3551 -152 4.1 TTGTGTGATCATAGTTGCAAAA
Shewanella putrefaciens CN-32 Sputcn32_1044 -143 4 CTGTGTGATCATGATTGCAAAT
Shewanella sp W3-18-1 Sputw3181_3121 -143 4 CTGTGTGATCATGATTGCAAAT
Shewanella sp ANA-3 Shewana3_3152 -165 4.1 TTGTGTGATCATAGTTGCAAAA
Shewanella sp MR-4 Shewmr4_2972 -165 4.4 TTGTGTGATCATAGTTACAAAA
Shewanella sp MR-7 Shewmr7_3054 -165 4.4 TTGTGTGATCATAGTTACAAAA
Shewanella baltica OS155 Sbal_1039 -126 3.8 CAGTGTGATCTTGTCAGCAAAA
Shewanella amazonensis SB2B Sama_1068 -192 4.2 ATGTGTGAGCTTTGGCAAATTT
Shewanella amazonensis SB2B Sama_1068 -192 4.2 ATGTGTGAGCTTTGGCAAATTT
Shewanella halifaxensis HAW-EB4 Shal_1246 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella sediminis HAW-EB3 Ssed_1335 -273 4.4 AAATGTGATGCGTAGCACTTAC
Position: -101
Score: 4
Sequence: TATTGTGAAATATTTTACTGTT
Locus tag: Ssed_1339
Ssed_1339 -101 4 TATTGTGAAATATTTTACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3411
Ortholog function: tricorn protease homolog (EC 3.4.21.-)
Shewanella sp ANA-3 Shewana3_1144 -85 4.4 GGATGTGAGTTGCTTCACAATT
Shewanella sp MR-4 Shewmr4_1143 -85 5 AGATGTGACTTGCCTCACAATT
Shewanella sp MR-7 Shewmr7_1214 -85 4.4 GGATGTGACTTGCCTCACAATT
Shewanella baltica OS155 Sbal_1232 -78 5.5 AAATGTGATTAAGTTCACAATT
Shewanella sediminis HAW-EB3 Ssed_1339 -101 4 TATTGTGAAATATTTTACTGTT
Position: -158
Score: 4.5
Sequence: TTTTGTGAGCTTGGTCATGTAT
Position: -108
Score: 3.7
Sequence: TTAATTGATCTGGATCAATAAG
Locus tag: Ssed_1469
Ssed_1469 -158 4.5 TTTTGTGAGCTTGGTCATGTAT
-108 3.7 TTAATTGATCTGGATCAATAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W precursor
Shewanella oneidensis MR-1 SO1673 -161 4.4 TAGCGTGATTTGGATCTCAATG
-110 4.4 AATTTTGATTTGGATCAATAAT
Shewanella putrefaciens CN-32 Sputcn32_1392 -211 4.2 ATAAATGCTGCGTATCACATAA
-158 4 TTTCGTGATTAGGATCTCAAGT
Shewanella sp W3-18-1 Sputw3181_2709 -211 4.2 ATAAATGCTGCGTATCACATAA
Shewanella sp ANA-3 Shewana3_2775 -107 3.8 AATCTTGATTTGGATCAATAAG
Shewanella baltica OS155 Sbal_1490 -158 4 TTTCGTGATTCAGCTCCCATGT
Shewanella denitrificans OS217 Sden_2589 -157 4.2 TTTTGTGAATTAGATCAAGACT
Shewanella frigidimarina NCIMB 400 Sfri_1334 -232 3.9 TCGCTTGATCAACCTCACAAAA
-170 3.9 TTTTGTGATCCAAATCAACAGC
Shewanella amazonensis SB2B Sama_1371 -56 4 AATTGTTACGGACGTAACAGAA
Shewanella pealeana ATCC 700345 Spea_2787 -159 4.4 TATTGTGATCTAGATCCTTTTA
Shewanella halifaxensis HAW-EB4 Shal_2887 -161 5.1 AAATGTGATCTTCATCGCCTTT
-111 4.8 ATTTTTGATTCAGGTCAAATTT
Shewanella piezotolerans WP3 swp_3395 -214 4 TTGCGTGTTGTATGTCACCAAA
-161 4.4 AAATGTGATCGCGATCACTGCT
Shewanella sediminis HAW-EB3 Ssed_1469 -158 4.5 TTTTGTGAGCTTGGTCATGTAT
-108 3.7 TTAATTGATCTGGATCAATAAG
Shewanella woodyi ATCC 51908 Swoo_3207 -211 4.3 AATTATGACGTCGCTCACTAAA
-158 4.5 AAGTGTGAGTTCGATCAAGTAT
-108 3.9 TTTATTGATTTGGATCAATAAA
Position: -92
Score: 4.3
Sequence: TTAATTGAGCAAGATCACACTT
Locus tag: Ssed_1473
Ssed_1473 -92 4.3 TTAATTGAGCAAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atoB
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella amazonensis SB2B Sama_1375 -67 4.1 AACCGCGACCGCCATCACATTT
Shewanella loihica PV-4 Shew_1667 -75 4.2 TTATTTGAACATGATCACGCTT
Shewanella pealeana ATCC 700345 Spea_2783 -138 4.5 AATATTGAGCAAGATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_2878 -138 4.2 AATGTTGAGCAAGATCACACTT
Shewanella piezotolerans WP3 swp_3387 -175 4.4 AATGTTGAGCGAGATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1473 -92 4.3 TTAATTGAGCAAGATCACACTT
Position: -191
Score: 4
Sequence: TAGGCTGATCTAGGTCACACAT
Position: -4
Score: 3.6
Sequence: AAAAATGATGAACGTAAAAAAT
Locus tag: Ssed_1525
Ssed_1525 -191 4 TAGGCTGATCTAGGTCACACAT
-4 3.6 AAAAATGATGAACGTAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -248 3.7 TGTTGTTTTTTTGCTCTCAATT
-190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella putrefaciens CN-32 Sputcn32_1478 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp W3-18-1 Sputw3181_2623 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp ANA-3 Shewana3_2676 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-4 Shewmr4_2510 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-7 Shewmr7_2578 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella baltica OS155 Sbal_1589 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella frigidimarina NCIMB 400 Sfri_2637 -164 3.8 TAGGCTGATCATCATCACACAA
Shewanella amazonensis SB2B Sama_1208 -230 3.9 TTTTTTGATCTGAAACAGCTTT
-178 3.6 TAGCCGGATCCAGTTCACACAT
Shewanella loihica PV-4 Shew_2525 -179 3.6 TAGAAAGATCTCGGTCACACAT
Shewanella halifaxensis HAW-EB4 Shal_2784 -264 4 TTTTATTACATTTATCACGTAT
Shewanella sediminis HAW-EB3 Ssed_1525 -191 4 TAGGCTGATCTAGGTCACACAT
Shewanella woodyi ATCC 51908 Swoo_3125 -288 3.7 ATGAGTTACAACTTTCACACAT
Position: 26
Score: 3.8
Sequence: TACTGTGAGCCTGTACAGATTA
Locus tag: Ssed_1528
Ssed_1528 26 3.8 TACTGTGAGCCTGTACAGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrF
Ortholog function: surface localized decaheme cytochrome c lipoprotein, MtrF
Shewanella oneidensis MR-1 SO1780 -339 3.8 TTATGTGACAAAAATCTCTATG
Shewanella sp ANA-3 Shewana3_2674 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella sp MR-4 Shewmr4_2508 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella sp MR-7 Shewmr7_2576 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella baltica OS155 Sbal_1591 -304 3.8 TTATGTGACAAAAATACCAATG
-181 4.8 AAACGTGATCAACATCACGCTT
Shewanella amazonensis SB2B Sama_1211 -189 3.9 CGGCGTGACACTCATCACACTT
Shewanella loihica PV-4 Shew_2521 -260 4.5 TTATGTGACAGATATCTCAATC
-170 5.3 CAACGTGATCTAGATCACATAT
Shewanella pealeana ATCC 700345 Spea_2694 -286 4.1 TTATGTGACAAAACTCTCAACT
-197 5.4 AAGTGTGATACGCATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_2780 -305 4.5 TTATGTGATAAATATCTCAACT
-184 4.6 AAACTTGACACAGATCACACTT
Shewanella piezotolerans WP3 swp_3274 -308 4.2 TTATGTGACAAATCTCTCAACT
-185 4.6 CAGTGTGACGTAGATCACGCTT
Shewanella sediminis HAW-EB3 Ssed_1528 -291 4 TTATGTGACAAAAGTCTCAACT
-174 4.8 TAGCGTGACCAAGATCACACTT
Position: -291
Score: 4
Sequence: TTATGTGACAAAAGTCTCAACT
Position: -174
Score: 4.8
Sequence: TAGCGTGACCAAGATCACACTT
Locus tag: Ssed_1530
Ssed_1530 -291 4 TTATGTGACAAAAGTCTCAACT
-174 4.8 TAGCGTGACCAAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrD
Ortholog function: periplasmic decaheme cytochrome c, MtrD
Shewanella oneidensis MR-1 SO1782 -339 3.8 TTATGTGACAAAAATCTCTATG
Shewanella sp ANA-3 Shewana3_2672 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella sp MR-4 Shewmr4_2506 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella sp MR-7 Shewmr7_2574 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella baltica OS155 Sbal_1593 -304 3.8 TTATGTGACAAAAATACCAATG
-181 4.8 AAACGTGATCAACATCACGCTT
Shewanella amazonensis SB2B Sama_1213 -189 3.9 CGGCGTGACACTCATCACACTT
Shewanella loihica PV-4 Shew_2519 -260 4.5 TTATGTGACAGATATCTCAATC
-170 5.3 CAACGTGATCTAGATCACATAT
Shewanella pealeana ATCC 700345 Spea_2692 -286 4.1 TTATGTGACAAAACTCTCAACT
-197 5.4 AAGTGTGATACGCATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_2778 -305 4.5 TTATGTGATAAATATCTCAACT
-184 4.6 AAACTTGACACAGATCACACTT
Shewanella piezotolerans WP3 swp_3272 -308 4.2 TTATGTGACAAATCTCTCAACT
-185 4.6 CAGTGTGACGTAGATCACGCTT
Shewanella sediminis HAW-EB3 Ssed_1530 -291 4 TTATGTGACAAAAGTCTCAACT
-174 4.8 TAGCGTGACCAAGATCACACTT
Position: -275
Score: 4.9
Sequence: AAGTGTGATCTTGGTCACGCTA
Position: -158
Score: 4.3
Sequence: AGTTGAGACTTTTGTCACATAA
Locus tag: Ssed_1531
Ssed_1531 -275 4.9 AAGTGTGATCTTGGTCACGCTA
-158 4.3 AGTTGAGACTTTTGTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella oneidensis MR-1 SO1783 -153 4 CATAGAGATTTTTGTCACATAA
Shewanella putrefaciens CN-32 Sputcn32_1480 -155 4.6 CATTGGGATTTTTATCACATAA
Shewanella sp W3-18-1 Sputw3181_2621 -155 4.6 CATTGGGATTTTTATCACATAA
Shewanella sp ANA-3 Shewana3_2671 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella sp MR-4 Shewmr4_2505 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella sp MR-7 Shewmr7_2573 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella baltica OS155 Sbal_1594 -276 5 AAGCGTGATGTTGATCACGTTT
Shewanella denitrificans OS217 Sden_2415 -148 3.9 ATCTGCGGTATTTATCACATAA
Shewanella amazonensis SB2B Sama_1214 -228 3.8 AAGTGTGATGAGTGTCACGCCG
Shewanella loihica PV-4 Shew_2518 -245 5.2 ATATGTGATCTAGATCACGTTG
-155 4.2 GATTGAGATATCTGTCACATAA
Shewanella pealeana ATCC 700345 Spea_2691 -247 5.5 TTATGTGATGCGTATCACACTT
-158 4.2 AGTTGAGAGTTTTGTCACATAA
Shewanella halifaxensis HAW-EB4 Shal_2777 -279 4.7 AAGTGTGATCTGTGTCAAGTTT
-158 4.7 AGTTGAGATATTTATCACATAA
Shewanella piezotolerans WP3 swp_3271 -280 4.6 AAGCGTGATCTACGTCACACTG
-157 4.2 AGTTGAGAGATTTGTCACATAA
Shewanella sediminis HAW-EB3 Ssed_1531 -275 4.9 AAGTGTGATCTTGGTCACGCTA
-158 4.3 AGTTGAGACTTTTGTCACATAA
Shewanella woodyi ATCC 51908 Swoo_3123 -272 4.7 AATCGTGACTTATATCACTTAA
-157 4.2 AGTTGGGACTTTTGTCACATAA
Position: -127
Score: 3.9
Sequence: AAAATAGATCTACTTCACCTAT
Locus tag: Ssed_1560
Ssed_1560 -127 3.9 AAAATAGATCTACTTCACCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nadC
Ortholog function: di-and tricarboxylate transporter
Shewanella putrefaciens CN-32 Sputcn32_3393 -262 4.5 AAGCGTGATTAGTGTCACAGTT
-154 4.1 TTTGGTGATTTTTGTCGCGTAA
-125 3.9 TTTTGCGATTTTTATCGACAAA
-92 3.8 TGATGTGATAAAGCTACAAAAT
-57 4.4 ATGTGTGATCTATGCCATAAAT
Shewanella sp W3-18-1 Sputw3181_0550 -262 4.8 AAGTGTGATTAGTGTCACAGTT
-154 4.1 TTTGGTGATTTTTGTCGCGTAA
-125 3.9 TTTTGCGATTTTTATCGACAAA
-92 3.8 TGATGTGATAAAGCTACAAAAT
-57 3.8 GTGTGTGATCTATGCCATAAAT
Shewanella sp ANA-3 Shewana3_0451 -262 4.4 AAGTTTGACATGGGTCACAGTT
Shewanella baltica OS155 Sbal_0427 -57 3.8 AAGTGTGATCTATGCCCTAAAT
Shewanella pealeana ATCC 700345 Spea_2663 -262 4.3 TAAAGTGATCGCGATCACACCG
-152 4.4 AATAGTGACAAACATCACATCA
Shewanella halifaxensis HAW-EB4 Shal_2750 -250 4.5 TAAAGAGATCGAGATCACACTA
-140 3.8 TTAAGAGATGTTTATCGCAATC
Shewanella piezotolerans WP3 swp_3241 -123 3.8 TTATGCGCCCTTCATCACCCTA
Shewanella sediminis HAW-EB3 Ssed_1560 -127 3.9 AAAATAGATCTACTTCACCTAT
Position: -72
Score: 3.9
Sequence: TATTGAGCTTCCTATCAAACAT
Locus tag: Ssed_1619
Ssed_1619 -72 3.9 TATTGAGCTTCCTATCAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Shewanella putrefaciens CN-32 Sputcn32_2469 -60 4.2 AGGTTAGATTTTGATCACATTT
-30 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp W3-18-1 Sputw3181_1539 -60 4.4 ATGTTAGATTTTGATCACATTT
-30 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp ANA-3 Shewana3_1451 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-4 Shewmr4_1398 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-7 Shewmr7_1463 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella baltica OS155 Sbal_2770 -102 3.8 AGGTTAGATTTTAATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2686 -64 4.5 AAGTGTGAACTAGATCGAACTT
Shewanella amazonensis SB2B Sama_2177 -77 3.8 AATTGGGATCCGACCCAAACTT
Shewanella pealeana ATCC 700345 Spea_2608 -104 3.8 TGGTTAGATCTTCATCACATTC
Shewanella halifaxensis HAW-EB4 Shal_2680 -74 3.7 ATTTGAGCCTTGGCTCATAAAT
Shewanella piezotolerans WP3 swp_3151 -72 3.7 ATTATTGAGCTATAGCTCAAAT
-70 4.3 TATTGAGCTATAGCTCAAATAT
Shewanella sediminis HAW-EB3 Ssed_1619 -72 3.9 TATTGAGCTTCCTATCAAACAT
Shewanella woodyi ATCC 51908 Swoo_3036 -86 4.4 GTATATGACCCAGTTCACATTT
Position: -316
Score: 4.6
Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: Ssed_1627
Ssed_1627 -316 4.6 AAGTGTGATCTGATTCTAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3090
Ortholog function: MoxR-like ATPase in aerotolerance operon
Shewanella oneidensis MR-1 SO3090 -165 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella putrefaciens CN-32 Sputcn32_2461 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp W3-18-1 Sputw3181_1547 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp ANA-3 Shewana3_1459 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-4 Shewmr4_1406 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-7 Shewmr7_1471 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella baltica OS155 Sbal_2762 -148 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella denitrificans OS217 Sden_1528 -157 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella frigidimarina NCIMB 400 Sfri_2678 -167 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella amazonensis SB2B Sama_2169 -137 4.2 AAGTGTGACCCGATTCTAACTT
Shewanella loihica PV-4 Shew_2427 -296 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella pealeana ATCC 700345 Spea_2600 -306 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella halifaxensis HAW-EB4 Shal_2672 -319 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella piezotolerans WP3 swp_3141 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sediminis HAW-EB3 Ssed_1627 -316 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella woodyi ATCC 51908 Swoo_3028 -306 4.8 AAATGTGATCTGATTCTAACTT
Position: -151
Score: 3.9
Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: Ssed_1628
Ssed_1628 -151 3.9 AAGTTAGAATCAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO3089 -131 3.9 AAGTTAGAATCAGATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_2460 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp W3-18-1 Sputw3181_1548 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp ANA-3 Shewana3_1460 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-4 Shewmr4_1407 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-7 Shewmr7_1472 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella baltica OS155 Sbal_2761 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella denitrificans OS217 Sden_1529 -109 3.9 AAGTTAGAATCAGATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2677 -104 3.9 AAGTTAGAATCAGATCACACTT
Shewanella amazonensis SB2B Sama_2168 -112 3.6 AAGTTAGAATCGGGTCACACTT
Shewanella loihica PV-4 Shew_2426 -134 3.9 AAGTTAGAATCAGATCACACTT
Shewanella pealeana ATCC 700345 Spea_2599 -116 3.9 AAGTTAGAATCAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_2671 -119 3.9 AAGTTAGAATCAGATCACACTT
Shewanella piezotolerans WP3 swp_3140 -122 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sediminis HAW-EB3 Ssed_1628 -151 3.9 AAGTTAGAATCAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_3027 -138 4.1 AAGTTAGAATCAGATCACATTT
Position: -311
Score: 3.9
Sequence: AGTTGTTAAGTGGCTCCCAATT
Locus tag: Ssed_1709
Ssed_1709 -311 3.9 AGTTGTTAAGTGGCTCCCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_1673
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_2377 -298 3.8 AGTTGTTAAGTGCCTCCCAAAT
Shewanella sp W3-18-1 Sputw3181_1632 -298 3.8 AGTTGTTAAGTGCCTCCCAAAT
Shewanella frigidimarina NCIMB 400 Sfri_2472 -298 4.1 ACTTGTTATCCAGCTCTCACTT
Shewanella amazonensis SB2B Sama_1499 -278 3.9 CTATGTTAGCTGTGTCGCAAAT
Shewanella loihica PV-4 Shew_2389 -301 4 AGATGTTAACTAGCTCCCAAAT
Shewanella pealeana ATCC 700345 Spea_1673 -311 4.2 AGTTGTTAACTGGATCTCAAAT
Shewanella halifaxensis HAW-EB4 Shal_2591 -312 4.2 AGTTGTTAACTGGATCTCAAAT
Shewanella piezotolerans WP3 swp_1953 -311 4 AGTTGTTAAGTCGCTCTCAATT
Shewanella sediminis HAW-EB3 Ssed_1709 -311 3.9 AGTTGTTAAGTGGCTCCCAATT
Shewanella woodyi ATCC 51908 Swoo_2882 -310 4.2 AGTTGTTAACTGGATCTCAAAT
Position: -165
Score: 3.8
Sequence: CAACTTGATTTCGCTCAAGTAT
Locus tag: Ssed_1826
Ssed_1826 -165 3.8 CAACTTGATTTCGCTCAAGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_2271
Ortholog function: permease of the major facilitator superfamily
Shewanella frigidimarina NCIMB 400 Sfri_2271 -125 4.1 TTTTATGACTTAGGTCAACTTA
Shewanella loihica PV-4 Shew_1497 -123 4.3 TAACTTGAACTGGCTCACGTAA
Shewanella pealeana ATCC 700345 Spea_1591 -100 4.8 ATATTTGATCCAGCTCAAACTT
Shewanella halifaxensis HAW-EB4 Shal_1659 -100 4.3 ATGCTTGATCTAGCTCAAACTT
Shewanella piezotolerans WP3 swp_1789 -100 4.1 CTCTATGATATAGCTCACAGAT
Shewanella sediminis HAW-EB3 Ssed_1826 -165 3.8 CAACTTGATTTCGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2762 -220 4.1 AAACTTGATTTCGCTCAAGTAA
Position: -53
Score: 3.8
Sequence: TTCTGTGACATGGGTTACACTC
Locus tag: Ssed_1830
Ssed_1830 -53 3.8 TTCTGTGACATGGGTTACACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2797
Ortholog function: glutaredoxin
Shewanella oneidensis MR-1 SO2797 -70 4.5 TTATGAGAGCAGAATCACATTT
Shewanella sp ANA-3 Shewana3_2579 -102 4.7 TTATGCGAGCGGAATCACATTT
Shewanella sp MR-4 Shewmr4_2417 -101 4.7 TTATGCGAGCGGAATCACATTT
Shewanella sp MR-7 Shewmr7_2487 -88 4.8 TTATGCGAGCGAAATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1830 -53 3.8 TTCTGTGACATGGGTTACACTC
Position: -226
Score: 4.5
Sequence: ATTTGGGATCAATATCACCTTT
Locus tag: Ssed_1847
Ssed_1847 -226 4.5 ATTTGGGATCAATATCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2757
Ortholog function: Histidine permease YuiF
Shewanella oneidensis MR-1 SO2757 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella putrefaciens CN-32 Sputcn32_1598 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp W3-18-1 Sputw3181_2424 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp ANA-3 Shewana3_2542 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp MR-4 Shewmr4_2377 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp MR-7 Shewmr7_2449 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella baltica OS155 Sbal_1737 -227 4.2 ATTTAAGACCAATATCACATTT
Shewanella denitrificans OS217 Sden_2092 -208 4.3 ATATGCGAGAGGGATCACAATC
Shewanella frigidimarina NCIMB 400 Sfri_1454 -191 3.5 TTAAATAATAAGTTTCAAATAT
Shewanella amazonensis SB2B Sama_2095 -210 3.9 AATTTGGAGGAATATCACACAA
Shewanella loihica PV-4 Shew_1515 -230 4 ATTTGGGATCATTGTCACTTTT
Shewanella halifaxensis HAW-EB4 Shal_1682 -225 3.9 ATTTGATATCAATATCACTTTT
Shewanella piezotolerans WP3 swp_1820 -77 4.1 ATTTGAGAGCAATATCACTTTT
Shewanella sediminis HAW-EB3 Ssed_1847 -226 4.5 ATTTGGGATCAATATCACCTTT
Shewanella woodyi ATCC 51908 Swoo_2742 -155 4 TTTAGTGCTGTTATTTACACTT
Position: -106
Score: 4.4
Sequence: AAAGGTGATATTGATCCCAAAT
Locus tag: Ssed_1848
Ssed_1848 -106 4.4 AAAGGTGATATTGATCCCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Swoo_2741
Ortholog function: Alkyl hydroperoxide reductase subunit C-like protein
Shewanella putrefaciens CN-32 Sputcn32_1599 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp W3-18-1 Sputw3181_2423 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp ANA-3 Shewana3_2541 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-4 Shewmr4_2376 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-7 Shewmr7_2448 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella baltica OS155 Sbal_1738 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella denitrificans OS217 Sden_2091 -88 4.7 GATTGTGATCCCTCTCGCATAT
Shewanella amazonensis SB2B Sama_2094 -115 4.3 TTGTGTGATATTCCTCCAAATT
Shewanella loihica PV-4 Shew_1516 -105 4.1 AAAAGTGACAATGATCCCAAAT
Shewanella halifaxensis HAW-EB4 Shal_1683 -108 4.4 AAAAGTGATATTGATATCAAAT
Shewanella piezotolerans WP3 swp_1821 -108 4.7 AAAAGTGATATTGCTCTCAAAT
Shewanella sediminis HAW-EB3 Ssed_1848 -106 4.4 AAAGGTGATATTGATCCCAAAT
Position: -257
Score: 3.8
Sequence: AAGTGTGATCTTGGTCGGTAAA
Locus tag: Ssed_1852
Ssed_1852 -257 3.8 AAGTGTGATCTTGGTCGGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1 SO2753 -235 4.7 TTAAGTGATCTGCCTCACTTAA
Shewanella putrefaciens CN-32 Sputcn32_1602 -234 4.8 TTAAGTGATCTAGCTCACTTAA
Shewanella sp W3-18-1 Sputw3181_2420 -234 4.8 TTAAGTGATCTAGCTCACTTAA
Shewanella sp ANA-3 Shewana3_2536 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-4 Shewmr4_2373 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-7 Shewmr7_2445 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella baltica OS155 Sbal_1741 -233 4.7 AAAGGTGATCTATATCACTTAA
Shewanella amazonensis SB2B Sama_2091 -226 4.7 TTGTGTGATCTTGCGCACGTTA
Shewanella loihica PV-4 Shew_1522 -276 3.5 ATTTGCGCTTGATTACGCAAAA
Shewanella pealeana ATCC 700345 Spea_2569 -251 3.9 TAGTGTGGGTTTAGTCACACTT
Shewanella halifaxensis HAW-EB4 Shal_1686 -266 3.6 TATTGCGGGGTTTGTCACGTTT
Shewanella piezotolerans WP3 swp_1825 -248 3.6 TTGTGAGTCCTTAATCACGTTT
Shewanella sediminis HAW-EB3 Ssed_1852 -257 3.8 AAGTGTGATCTTGGTCGGTAAA
Shewanella woodyi ATCC 51908 Swoo_2736 -259 3.7 TAGTGTGATCTAGGTTGGGTAA
Position: -136
Score: 4.4
Sequence: AATTGTGATCTGCGTGGCAATT
Locus tag: Ssed_1878
Ssed_1878 -136 4.4 AATTGTGATCTGCGTGGCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2637
Ortholog function: hypothetical protein
Shewanella amazonensis SB2B Sama_2066 -139 4 ATTTGTGATCACTGTGGCAATT
Shewanella loihica PV-4 Shew_1556 -132 4.2 AATTGTGATCGGCGTGGCAATT
Shewanella pealeana ATCC 700345 Spea_2542 -138 4.3 ATTTGTGATTTGTCTGGCAATT
Shewanella halifaxensis HAW-EB4 Shal_1712 -140 4.1 ATTTGTGAACTATCTGGCAATT
Shewanella piezotolerans WP3 swp_1858 -143 4.3 ATTTGTGATCCATGTGGCAATT
Shewanella sediminis HAW-EB3 Ssed_1878 -136 4.4 AATTGTGATCTGCGTGGCAATT
Shewanella woodyi ATCC 51908 Swoo_2709 -136 4.4 AATTGTGATCTGTGTGGCAATT
Position: -275
Score: 3.9
Sequence: AAGTGTGATCTGCGCCAAGTTG
Locus tag: Ssed_1883
Ssed_1883 -275 3.9 AAGTGTGATCTGCGCCAAGTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Shewanella oneidensis MR-1 SO2629 -199 4.1 AAATGTGATCTACACCTAAATG
Shewanella putrefaciens CN-32 Sputcn32_2230 -212 3.9 AAATGTGATCTGTGCCTAAATG
Shewanella sp W3-18-1 Sputw3181_1779 -212 3.9 AAATGTGATCTGTGCCTAAATG
Shewanella sp ANA-3 Shewana3_1750 -209 3.9 AAATGTGATCTACGCCTAAATG
Shewanella sp MR-4 Shewmr4_1606 -208 3.9 AAATGTGATCTACGCCTAAATG
Shewanella sp MR-7 Shewmr7_1681 -208 3.9 AAATGTGATCTACGCCTAAATG
Shewanella baltica OS155 Sbal_2475 -212 3.9 AAATGTGATCTGTGCCTAAATG
Shewanella frigidimarina NCIMB 400 Sfri_2257 -242 4.6 AATTGTGATCTGTACCTAATTT
Shewanella loihica PV-4 Shew_1563 -237 3.8 ATTTATGATGTCGGCCAACTAA
-217 4.1 AAATGTGATCGATAGCAAAACG
Shewanella pealeana ATCC 700345 Spea_2535 -195 4.2 AAGTGTGATCTGCAGCTAACTA
Shewanella piezotolerans WP3 swp_1868 -21 4.2 AAGTGTGATCCGCAACTAAATT
Shewanella sediminis HAW-EB3 Ssed_1883 -275 3.9 AAGTGTGATCTGCGCCAAGTTG
Shewanella woodyi ATCC 51908 Swoo_2702 -304 3.9 AAGTGTGATCTAAGCCAAGTTG
Position: -346
Score: 3.6
Sequence: TAGTGTAATAAATAACAAATAG
Position: -222
Score: 3.5
Sequence: TAATGTGAGCACCAACTAGTAA
Position: -162
Score: 4
Sequence: AAAGATGATCTAGTTCATATTG
Position: -102
Score: 3.6
Sequence: AAGCTTGATGTGAGTCAATATT
Locus tag: Ssed_1908
Ssed_1908 -346 3.6 TAGTGTAATAAATAACAAATAG
-222 3.5 TAATGTGAGCACCAACTAGTAA
-162 4 AAAGATGATCTAGTTCATATTG
-102 3.6 AAGCTTGATGTGAGTCAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyaA
Ortholog function: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Shewanella oneidensis MR-1 SO2099 -105 4 ATTCTTGATATGCATCAATAAT
Shewanella putrefaciens CN-32 Sputcn32_2088 -167 3.7 AAATTAGATCTGCGTCATGTTA
-107 4 ATTCTTGATATACATCAATAAT
Shewanella sp W3-18-1 Sputw3181_1924 -167 3.7 AAATTAGATCTGCGTCATGTTA
-107 4 ATTCTTGATATACATCAATAAT
Shewanella sp ANA-3 Shewana3_1880 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-4 Shewmr4_1822 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-7 Shewmr7_2155 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella baltica OS155 Sbal_1889 -229 3.9 TTAAGTGACCGATTTCATCCAA
-167 3.7 AAATTAGATCTACGTCATGTTA
-107 4.2 ATTCTTGATATACATCAAGAAT
Shewanella frigidimarina NCIMB 400 Sfri_2103 -174 3.8 TTTTGTTAACTTGATCAACATC
-168 4.4 TAACTTGATCAACATCATAAAT
Shewanella amazonensis SB2B Sama_1679 -172 3.4 AAGCATGACACACCTCATGTTA
Shewanella loihica PV-4 Shew_1765 -164 3.8 AAACTTGATCCAGCTCATAGCT
-103 3.7 AATGTTGACATACATCAACATT
Shewanella pealeana ATCC 700345 Spea_2033 -211 4.6 TTACGTGACCACGATCACCTTT
Shewanella halifaxensis HAW-EB4 Shal_2261 -212 5 TTACGTGATCTCCATCACCTTT
Shewanella sediminis HAW-EB3 Ssed_1908 -162 4 AAAGATGATCTAGTTCATATTG
Position: -134
Score: 3.5
Sequence: TTACTTGTATTAAGTCACACAT
Position: -71
Score: 4.5
Sequence: AATTGTGATTATGATCAATAAA
Position: -65
Score: 3.6
Sequence: GATTATGATCAATAAAACATTT
Position: 20
Score: 3.6
Sequence: CCTTGCGATGCTTTTTACATTA
Locus tag: Ssed_1999
Ssed_1999 -134 3.5 TTACTTGTATTAAGTCACACAT
-71 4.5 AATTGTGATTATGATCAATAAA
-65 3.6 GATTATGATCAATAAAACATTT
20 3.6 CCTTGCGATGCTTTTTACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella oneidensis MR-1 SO2536 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella putrefaciens CN-32 Sputcn32_1791 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp W3-18-1 Sputw3181_2234 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp ANA-3 Shewana3_2323 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-4 Shewmr4_2146 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-7 Shewmr7_2223 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella baltica OS155 Sbal_2306 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella denitrificans OS217 Sden_1764 -66 3.8 ACTTGTGAATAGGATCATCATA
Shewanella frigidimarina NCIMB 400 Sfri_1869 -67 3.8 TCTTGTGAATGAGATCAATAAT
Shewanella amazonensis SB2B Sama_1870 -64 4.3 ACTTGTGATCAGGATCGCTTAT
Shewanella loihica PV-4 Shew_2108 -71 4.9 AATTGTGATTATGGTCATATAA
Shewanella pealeana ATCC 700345 Spea_2393 -70 4.5 AATTGTGAGATAGAACTCAAAA
Shewanella halifaxensis HAW-EB4 Shal_1890 -70 4.3 AATTGTGAGATAAACCTCAAAA
Shewanella piezotolerans WP3 swp_2312 -97 3.5 AATTGTGACGTAGACCCGCAAA
Shewanella sediminis HAW-EB3 Ssed_1999 -71 4.5 AATTGTGATTATGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_2604 -73 4.8 AATTGTGATATCGATCAATATA
Position: -197
Score: 3.7
Sequence: AAATGTTTTATTGATCATAATC
Position: -191
Score: 4.5
Sequence: TTTATTGATCATAATCACAATT
Position: -128
Score: 3.9
Sequence: ATGTGTGACTTAATACAAGTAA
Locus tag: Ssed_2000
Ssed_2000 -197 3.7 AAATGTTTTATTGATCATAATC
-191 4.5 TTTATTGATCATAATCACAATT
-128 3.9 ATGTGTGACTTAATACAAGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2535
Ortholog function: Predicted glutamine amidotransferase
Shewanella oneidensis MR-1 SO2535 -194 4.4 TTTGTTGATTGCGATCACAATT
Shewanella putrefaciens CN-32 Sputcn32_1792 -193 4.7 TTTATTGATGGCGATCACAATT
Shewanella sp W3-18-1 Sputw3181_2233 -193 4.7 TTTATTGATGGCGATCACAATT
Shewanella sp ANA-3 Shewana3_2322 -133 4.4 TTTGTTGATTGCGATCACAATT
Shewanella sp MR-4 Shewmr4_2145 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella sp MR-7 Shewmr7_2222 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella baltica OS155 Sbal_2305 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella denitrificans OS217 Sden_1765 -204 3.7 TATGATGATCCTATTCACAAGT
Shewanella frigidimarina NCIMB 400 Sfri_1870 -203 3.9 ATTATTGATCTCATTCACAAGA
Shewanella amazonensis SB2B Sama_1869 -195 3.9 ATAAGCGATCCTGATCACAAGT
Shewanella loihica PV-4 Shew_2107 -191 4.6 TTATATGACCATAATCACAATT
Shewanella pealeana ATCC 700345 Spea_2392 -196 4.4 TTTTGAGTTCTATCTCACAATT
Shewanella halifaxensis HAW-EB4 Shal_1891 -199 4.2 TTTTGAGGTTTATCTCACAATT
Shewanella sediminis HAW-EB3 Ssed_2000 -191 4.5 TTTATTGATCATAATCACAATT
Shewanella woodyi ATCC 51908 Swoo_2603 -190 4.8 TATATTGATCGATATCACAATT
Position: -316
Score: 4.6
Sequence: TTTCGTGACGCGCGTCACAGTT
Locus tag: Ssed_2036
Ssed_2036 -316 4.6 TTTCGTGACGCGCGTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2427
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO2427 -319 5.1 AAGTGTGATTAAAATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_1940 -318 5.7 TAGTGTGATCTACATCACATAA
-274 4 AAATGTTATTTTATTAACAGAG
Shewanella sp W3-18-1 Sputw3181_2068 -318 4.6 GCGTGTGATCTATATCACATAA
Shewanella sp ANA-3 Shewana3_1958 -320 5.2 AAGTGTGACACACATCACATAT
-276 4.4 AAATGTTATTTTCTTAACAGTT
Shewanella sp MR-4 Shewmr4_1903 -319 5.6 AAATGTGATGTGCGTCACATTT
-275 3.9 AAATGTTATTTTATTAACAGCT
Shewanella sp MR-7 Shewmr7_2075 -319 5.2 AAGTGTGACGTGTGTCACATTT
-275 4.3 AAATGTTATTTTATTAACAGTA
Shewanella baltica OS155 Sbal_2044 -317 5.1 AAGCGTGATCTGTGTCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2416 -149 5 AAATGTGATGTTGTTCACATGT
-4 4.1 ATTCATGAGTTCAGTCACATTA
Shewanella amazonensis SB2B Sama_1838 -324 3.8 TTAATCGATATGGGTCACAGAA
-301 5.2 AAGTGTGATGCACGTCACAAAA
Shewanella loihica PV-4 Shew_2074 -308 5.1 TTTTGTGATAATGGTCACACTT
Shewanella halifaxensis HAW-EB4 Shal_1923 -306 5.5 AATTGTGATGCGCGTCACAATT
-199 4.1 ACTTGTGCTGTTTGTCACAATG
Shewanella piezotolerans WP3 swp_2362 -310 4.7 AAGCGTGACCTGTGTCACACTT
Shewanella sediminis HAW-EB3 Ssed_2036 -316 4.6 TTTCGTGACGCGCGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_2565 -321 4.9 TTCTGTGACCTGTGTCACAAAA
Position: -177
Score: 4.4
Sequence: TTTTTTGACATAGCTCAAGTAT
Locus tag: Ssed_2211
Ssed_2211 -177 4.4 TTTTTTGACATAGCTCAAGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewanella oneidensis MR-1 SO2364 -173 4.3 TTTTTTGACATGGCTCAAGTAT
-125 4.1 AAATGTGAAGGATAACGCATTG
Shewanella putrefaciens CN-32 Sputcn32_1959 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp W3-18-1 Sputw3181_2046 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp ANA-3 Shewana3_2107 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-4 Shewmr4_2006 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-7 Shewmr7_1969 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella baltica OS155 Sbal_2201 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella baltica OS155 Sbal_4487 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella denitrificans OS217 Sden_1851 -182 4.7 TTTTTTGATGTAGCTCAAGTAT
Shewanella frigidimarina NCIMB 400 Sfri_2010 -186 4.4 TTTTTTGACTTAGCTCAAGTAT
Shewanella amazonensis SB2B Sama_1791 -180 4.3 TTTTTTGACACAGCTCAAGTAT
Shewanella loihica PV-4 Shew_1985 -178 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella pealeana ATCC 700345 Spea_2214 -219 4.1 TACCTTGATCTAGATCAACTTA
-176 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_2197 -221 4.5 AGATTTGATCTAGATCAACTTT
-178 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella piezotolerans WP3 swp_2572 -221 4.3 TAGCTTGATCTAGATCAACTTT
-178 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella sediminis HAW-EB3 Ssed_2211 -177 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2425 -220 4.3 TAGCTTGATCTAGATCAACTTT
-177 4.4 TTTTTTGACATAGCTCAAGTAT
Position: -159
Score: 4.2
Sequence: ATGTGTTAACTGGGTCAAATAT
Locus tag: Ssed_2279
Ssed_2279 -159 4.2 ATGTGTTAACTGGGTCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1419
Ortholog function: lipoprotein, putative
Shewanella oneidensis MR-1 SO1419 -117 3.9 AAGTGTTAGCTAACTCATAGAT
Shewanella loihica PV-4 Shew_1972 -120 4.5 TTTTGTTAAGCAGATCAAAATA
Shewanella pealeana ATCC 700345 Spea_2091 -120 4.2 TAGTGTTAACTGTGTCAAATAA
Shewanella halifaxensis HAW-EB4 Shal_2064 -93 4.1 TTGTGTTAACTGCGTCAAATAA
Shewanella piezotolerans WP3 swp_2516 -119 4.5 AAATGTTATCTCTGTCAAACAA
Shewanella sediminis HAW-EB3 Ssed_2279 -159 4.2 ATGTGTTAACTGGGTCAAATAT
Position: -209
Score: 4.5
Sequence: ATATTTGACCCAGTTAACACAT
Locus tag: Ssed_2280
Ssed_2280 -209 4.5 ATATTTGACCCAGTTAACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: apbE
Ortholog function: thiamin biosynthesis lipoprotein ApbE
Shewanella oneidensis MR-1 SO1418 -91 3.8 ATCTATGAGTTAGCTAACACTT
Shewanella loihica PV-4 Shew_1971 -99 4.9 TATTTTGATCTGCTTAACAAAA
Shewanella pealeana ATCC 700345 Spea_2090 -32 4.4 TTATTTGACACAGTTAACACTA
Shewanella halifaxensis HAW-EB4 Shal_2063 -95 4.4 TTATTTGACGCAGTTAACACAA
Shewanella piezotolerans WP3 swp_2515 -105 4.4 TTGTTTGACAGAGATAACATTT
Shewanella sediminis HAW-EB3 Ssed_2280 -209 4.5 ATATTTGACCCAGTTAACACAT
Position: -194
Score: 3.8
Sequence: AAATGTGATATTCCCCTAAAAG
Locus tag: Ssed_2358
Ssed_2358 -194 3.8 AAATGTGATATTCCCCTAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fumB
Ortholog function: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Shewanella oneidensis MR-1 SO2222 -105 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella putrefaciens CN-32 Sputcn32_1807 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp W3-18-1 Sputw3181_2218 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp ANA-3 Shewana3_2302 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-4 Shewmr4_2124 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-7 Shewmr7_2200 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella baltica OS155 Sbal_1918 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella denitrificans OS217 Sden_1912 -131 3.9 AAATGTGATGTAGCCCCAAAAG
Shewanella frigidimarina NCIMB 400 Sfri_2156 -122 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella amazonensis SB2B Sama_1688 -144 4.2 ACTTGTGATGTAGCCCAAAGAT
Shewanella loihica PV-4 Shew_1904 -111 3.9 AAATGTGATGTTCCCCTAAAAG
-73 4.8 TATTGTGAACGGATTCAAAAAA
Shewanella pealeana ATCC 700345 Spea_2038 -162 4.3 AAATGTGATGTTTAACTCAAAC
Shewanella halifaxensis HAW-EB4 Shal_2256 -162 4.3 AAATGTGATGTTTAACTCAAAC
Shewanella piezotolerans WP3 swp_2633 -162 4.4 AAATGTGATGTTTAACTCAAAG
Shewanella sediminis HAW-EB3 Ssed_2358 -194 3.8 AAATGTGATATTCCCCTAAAAG
Position: -41
Score: 3.5
Sequence: AGCTAAGACTGATATCACATTT
Locus tag: Ssed_2388
Ssed_2388 -41 3.5 AGCTAAGACTGATATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hydC
Ortholog function: Ni,Fe-hydrogenase I cytochrome b subunit
Shewanella oneidensis MR-1 SO2097 -105 4 ATTCTTGATATGCATCAATAAT
Shewanella putrefaciens CN-32 Sputcn32_2090 -167 3.7 AAATTAGATCTGCGTCATGTTA
-107 4 ATTCTTGATATACATCAATAAT
Shewanella sp W3-18-1 Sputw3181_1922 -167 3.7 AAATTAGATCTGCGTCATGTTA
-107 4 ATTCTTGATATACATCAATAAT
Shewanella sp ANA-3 Shewana3_1878 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-4 Shewmr4_1820 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-7 Shewmr7_2157 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella baltica OS155 Sbal_1887 -229 3.9 TTAAGTGACCGATTTCATCCAA
-167 3.7 AAATTAGATCTACGTCATGTTA
-107 4.2 ATTCTTGATATACATCAAGAAT
Shewanella frigidimarina NCIMB 400 Sfri_2105 -174 3.8 TTTTGTTAACTTGATCAACATC
-168 4.4 TAACTTGATCAACATCATAAAT
Shewanella amazonensis SB2B Sama_1677 -172 3.4 AAGCATGACACACCTCATGTTA
Shewanella loihica PV-4 Shew_1763 -164 3.8 AAACTTGATCCAGCTCATAGCT
-103 3.7 AATGTTGACATACATCAACATT
Shewanella pealeana ATCC 700345 Spea_2031 -211 4.6 TTACGTGACCACGATCACCTTT
Shewanella halifaxensis HAW-EB4 Shal_2263 -212 5 TTACGTGATCTCCATCACCTTT
Shewanella sediminis HAW-EB3 Ssed_1906 -162 4 AAAGATGATCTAGTTCATATTG
Position: -64
Score: 5
Sequence: TTTTGTGACTTTGCTCACCTTT
Locus tag: Ssed_2438
Ssed_2438 -64 5 TTTTGTGACTTTGCTCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2871
Ortholog function: arsenate reductase (EC 1.20.4.1)
Shewanella loihica PV-4 Shew_1840 -51 3.8 CCCTGTGACTCGGCTCACCTTT
Shewanella pealeana ATCC 700345 Spea_1970 -64 4.8 CATTGTGACTATGATCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_2329 -64 5.1 ATTTGTGACTCTGGTCACAAAT
Shewanella sediminis HAW-EB3 Ssed_2438 -64 5 TTTTGTGACTTTGCTCACCTTT
Shewanella woodyi ATCC 51908 Swoo_2168 -66 4.2 CCTTGTGACTTCGCTCACCTTT
Position: -94
Score: 4.6
Sequence: TATTGTTATTCAACTCATATTT
Locus tag: Ssed_2474
Ssed_2474 -94 4.6 TATTGTTATTCAACTCATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycbW
Ortholog function: probable membrane protein YcbW
Shewanella oneidensis MR-1 SO2591 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.8 TGATGTGCCAGTGTTCAAATAG
-2 3.7 TTATGTTATTATTGCCGCAAAA
Shewanella putrefaciens CN-32 Sputcn32_2193 -63 3.8 TATTTTGATATTGAATAAAATA
-34 4 TTATGTGCGAGTGTTCAAATAG
-2 3.8 TTATGTTATTAATGCCGCAAAA
Shewanella sp W3-18-1 Sputw3181_1816 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 3.8 TTATGTTATTAATGCCGCAAAA
Shewanella sp ANA-3 Shewana3_1787 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella sp MR-4 Shewmr4_1682 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.8 TGATGTGCCAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella sp MR-7 Shewmr7_1757 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella baltica OS155 Sbal_2438 -2 4.2 TTATGTTATTAATGCCACAAAA
Shewanella denitrificans OS217 Sden_1731 -139 4.2 ATTTATGAGTGCGATCAAAATT
Shewanella amazonensis SB2B Sama_1594 -2 3.9 TTATGTTATTAATGCCACATAC
Shewanella loihica PV-4 Shew_1811 -94 4.6 TGTTGTAATCTATATCATATTT
Shewanella pealeana ATCC 700345 Spea_1944 -62 4.1 TATTTTGATATTGATGAAATTA
Shewanella halifaxensis HAW-EB4 Shal_2355 -62 4.1 TATTTTGATATTGATGAAATAA
Shewanella piezotolerans WP3 swp_2809 -239 3.8 TTTAATAATATAGATCATAAAA
-143 4.1 TATTTTGATATTGATGAAATTA
-2 4 ATATGGAATTTCTATCACCTTT
Shewanella sediminis HAW-EB3 Ssed_2474 -94 4.6 TATTGTTATTCAACTCATATTT
Shewanella woodyi ATCC 51908 Swoo_2142 -52 4 TACTTTGATATTGAACAAAATA
Position: -84
Score: 3.9
Sequence: CAATGTAATATGCAAAACATTT
Locus tag: Ssed_2504
Ssed_2504 -84 3.9 CAATGTAATATGCAAAACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Shewanella oneidensis MR-1 SO4133 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella putrefaciens CN-32 Sputcn32_0543 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp W3-18-1 Sputw3181_3629 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp ANA-3 Shewana3_3680 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-4 Shewmr4_3505 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-7 Shewmr7_0447 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella baltica OS155 Sbal_3852 -229 3.8 GATTAGGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella denitrificans OS217 Sden_3074 -92 4.4 AACTGTGATGAAGTTAACCAAA
Shewanella frigidimarina NCIMB 400 Sfri_3403 -244 4.7 TAACTTGATGTAAATCACGTTA
-92 4.8 ATATGTGATCAAGTTAACCTTA
Shewanella amazonensis SB2B Sama_0412 -92 4.7 ATTCGTGATCCAGTTAACCTTA
Shewanella loihica PV-4 Shew_3390 -92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella pealeana ATCC 700345 Spea_0460 -92 4.7 AAGTGTGATCGGCTTAACCTTT
Shewanella halifaxensis HAW-EB4 Shal_0535 -92 4.6 AAGTGTGATCAGTTTAACCTTT
Shewanella piezotolerans WP3 swp_4702 -310 4.7 ATTTGTGAGTTAGATCATGTTT
-92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella sediminis HAW-EB3 Ssed_0461 -92 4.7 AAGTGTGATCGAGCTAACCTTT
Shewanella sediminis HAW-EB3 Ssed_2504 -84 3.9 CAATGTAATATGCAAAACATTT
Shewanella woodyi ATCC 51908 Swoo_4509 -272 4.9 AAATGTGATGTGGGTCAACAAA
-92 4.7 AAGTGTGATCAAGTTAACCTTA
Position: -151
Score: 5
Sequence: TTATGTGATGATGATCATAATT
Locus tag: Ssed_2523
Ssed_2523 -151 5 TTATGTGATGATGATCATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD1
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1 SO2581 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella putrefaciens CN-32 Sputcn32_1761 -154 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp W3-18-1 Sputw3181_2264 -154 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp ANA-3 Shewana3_2386 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp MR-4 Shewmr4_2177 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp MR-7 Shewmr7_2254 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella baltica OS155 Sbal_1864 -156 5.1 TTATGTGATGATGATCAAAATT
Shewanella denitrificans OS217 Sden_1625 -189 4.1 TTATGTGATTATGGGCCCAAAT
Shewanella frigidimarina NCIMB 400 Sfri_1733 -165 4.7 TTATGTGATTATGATCGAAAAT
Shewanella amazonensis SB2B Sama_1934 -140 4.8 TTATGTGATGATTGTCAAAAAT
Shewanella loihica PV-4 Shew_2188 -149 4.9 TTGTGTGATGATGTTCAAAATT
Shewanella pealeana ATCC 700345 Spea_2448 -156 5 TTATGTGATGATAATCAAAATT
Shewanella halifaxensis HAW-EB4 Shal_1832 -155 5 TTATGTGATGATAATCAAAATT
Shewanella piezotolerans WP3 swp_2289 -153 5 ATATGTGATGATAATCAAAATT
Shewanella sediminis HAW-EB3 Ssed_2523 -151 5 TTATGTGATGATGATCATAATT
Shewanella woodyi ATCC 51908 Swoo_2110 -153 5.1 TTATGTGATGATGTTCAAAATT
Position: -82
Score: 3.9
Sequence: AAATGGGAGCTGGATCTCATCA
Locus tag: Ssed_2618
Ssed_2618 -82 3.9 AAATGGGAGCTGGATCTCATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase (EC 3.5.4.5)
Shewanella oneidensis MR-1 SO2791 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella putrefaciens CN-32 Sputcn32_1568 -131 3.8 TATGGTGAAATCGGTCAAATAC
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella sp W3-18-1 Sputw3181_2531 -131 3.8 TATGGTGAAATCGGTCAAATAC
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella sp ANA-3 Shewana3_2573 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella sp MR-4 Shewmr4_2411 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella sp MR-7 Shewmr7_2481 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella baltica OS155 Sbal_1694 -157 3.8 ATTCGTGAATAGACTCACTCTA
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella frigidimarina NCIMB 400 Sfri_1637 -44 3.8 AAATTTTATTTTTATCCAATTT
Shewanella amazonensis SB2B Sama_1974 -82 4 AAATGGGATTAGACTCCCATTA
Shewanella halifaxensis HAW-EB4 Shal_1783 -81 3.9 AACTGAGATCTTCATCTCATTC
Shewanella piezotolerans WP3 swp_3037 -82 4.1 AAGTGCGATCTCTGTCGCATTC
Shewanella sediminis HAW-EB3 Ssed_2618 -82 3.9 AAATGGGAGCTGGATCTCATCA
Shewanella woodyi ATCC 51908 Swoo_2048 -82 3.9 AAATGGGAGAAAGATCCCATTA
Position: -51
Score: 5.1
Sequence: AAACGTGATTTCAATCACACTT
Locus tag: Ssed_2637
Ssed_2637 -51 5.1 AAACGTGATTTCAATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2589
Ortholog function: isopenicillin N synthase
Shewanella frigidimarina NCIMB 400 Sfri_1487 -55 4 AAGTGTGACTAAGGTTACCATT
Shewanella loihica PV-4 Shew_1590 -85 4.3 AAACGTGATTTTTATCACACCC
Shewanella pealeana ATCC 700345 Spea_2507 -84 4.2 AAGCGTGATCTAGCTCACTCAC
Shewanella halifaxensis HAW-EB4 Shal_1764 -84 4.4 CAGCGTGATCTACGTCACATTG
Shewanella piezotolerans WP3 swp_3059 -87 4.2 GAATGTGATCTAGCTCACAGGT
Shewanella sediminis HAW-EB3 Ssed_2637 -51 5.1 AAACGTGATTTCAATCACACTT
Shewanella woodyi ATCC 51908 Swoo_2030 -82 4.2 CAAGGTGATTTATCTCACACAG
Position: -116
Score: 4.5
Sequence: ATTTGTGACATACCTATCAATT
Locus tag: Ssed_2686
Ssed_2686 -116 4.5 ATTTGTGACATACCTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgR
Ortholog function: Tyrosine degradation transcriptional regulator, LysR family
Shewanella oneidensis MR-1 SO1965 -148 4.4 TACTGTGATCTTCTTATCAATT
Shewanella putrefaciens CN-32 Sputcn32_1672 -148 4.8 TTATGTGATCTTGTTATCAATT
Shewanella sp W3-18-1 Sputw3181_2353 -148 4.8 TTATGTGATCTTGTTATCAATT
Shewanella sp ANA-3 Shewana3_2480 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-4 Shewmr4_2290 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-7 Shewmr7_2362 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCTATCTAAAAA
Shewanella baltica OS155 Sbal_2614 -148 4.7 TAGTGTGATCTTGTTATCAATT
Shewanella denitrificans OS217 Sden_2161 -146 4.3 CGTTGTGATCTAGCTATCAATT
Shewanella frigidimarina NCIMB 400 Sfri_2325 -135 5.1 ATATGTGATCTAACTTACAATT
Shewanella amazonensis SB2B Sama_1570 -135 4.7 ATATGTGATCTGGGTATCAATT
Shewanella loihica PV-4 Shew_2153 -115 5.1 TTATGTGATCTAAGTAACAATT
Shewanella pealeana ATCC 700345 Spea_1875 -114 4.3 TAATGTGATCTAGGTTCAATTT
Shewanella halifaxensis HAW-EB4 Shal_2408 -114 4.5 TAATGTGATCTAGCTTTAATTT
Shewanella piezotolerans WP3 swp_2869 -115 4.9 TAATGTGATCTTGTTATCAATT
Shewanella sediminis HAW-EB3 Ssed_2686 -116 4.5 ATTTGTGACATACCTATCAATT
Shewanella woodyi ATCC 51908 Swoo_1933 -116 4.5 ATGTGTGATCTAAGTATCAATT
Position: -312
Score: 3.8
Sequence: TTTTGTAATTTTTTAAACAGTA
Locus tag: Ssed_2709
Ssed_2709 -312 3.8 TTTTGTAATTTTTTAAACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gloA
Ortholog function: lactoylglutathione lyase (EC 4.4.1.5)
Shewanella putrefaciens CN-32 Sputcn32_2101 -120 3.8 TTTTGTGAGCAACAACCAATTT
-4 3.8 ATTAATGATCTCGTTAACGCAA
Shewanella sp W3-18-1 Sputw3181_1911 -120 3.8 TTTTGTGAGCAACAACCAATTT
-4 3.8 ATTAATGATCTCGTTAACGCAA
Shewanella sp ANA-3 Shewana3_2232 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.4 CAAAGTGACGTAGCTCACAAAG
Shewanella sp MR-4 Shewmr4_2107 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.8 CAAAGTGATACAGCTCACATTA
Shewanella sp MR-7 Shewmr7_1867 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.8 CAAAGTGATACAGCTCACATTA
Shewanella baltica OS155 Sbal_2269 -196 4 TTTTGTGAGCGACAGCCAATTT
Shewanella baltica OS155 Sbal_4555 -196 4 TTTTGTGAGCGACAGCCAATTT
Shewanella frigidimarina NCIMB 400 Sfri_2179 -101 4.6 AAATGTGAACTAAAGCAAAATT
Shewanella frigidimarina NCIMB 400 Sfri_2098 -213 3.8 AAACGTTAAATCCATTACATTA
-41 3.7 TTTAATGATGCGATTCAGAGAT
Shewanella amazonensis SB2B Sama_1837 -96 4.3 AACTGTGAGTTGCTTCAGATTT
Shewanella halifaxensis HAW-EB4 Shal_1924 -95 4 TAAATTGATCTCGCTCAATTTT
Shewanella sediminis HAW-EB3 Ssed_2709 -312 3.8 TTTTGTAATTTTTTAAACAGTA
Shewanella woodyi ATCC 51908 Swoo_2563 -243 3.8 TTTTATGACTCTATTAATATAA
Position: -86
Score: 4.2
Sequence: GATCGTGACCTGTGTCACAGTT
Locus tag: Ssed_2818
Ssed_2818 -86 4.2 GATCGTGACCTGTGTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Shewanella putrefaciens CN-32 Sputcn32_2273 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1735 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2519 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2187 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2347 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1423 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1784 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2493 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2955 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2818 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1833 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -49
Score: 4.1
Sequence: AAAATTGATCTAGATCAATAAA
Locus tag: Ssed_2855
Ssed_2855 -49 4.1 AAAATTGATCTAGATCAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2010
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO2010 -70 4.7 TTTTGTGATCTTCGTCACTGTA
Shewanella putrefaciens CN-32 Sputcn32_2305 -65 5.1 TTTTGTGATCTCCATCACCGTT
Shewanella sp W3-18-1 Sputw3181_1703 -65 5.1 TTTTGTGATCTCCATCACCGTT
Shewanella sp MR-4 Shewmr4_2257 -65 4.9 TTTTGTGATCTTAATCACTGTA
Shewanella sp MR-7 Shewmr7_2329 -65 4.9 TTTTGTGATCTTAATCACTGTA
Shewanella baltica OS155 Sbal_2577 -65 5 TTTTGTGATCTAAATCACTGTA
Shewanella denitrificans OS217 Sden_2384 -81 4.8 AAATGTGATCCAGCTCAGCTTT
Shewanella frigidimarina NCIMB 400 Sfri_2410 -116 4.8 TTTTGTGATCGACTTCACGTCT
Shewanella amazonensis SB2B Sama_1307 -51 4.3 TTTTGTGAGCTGCATCACGGCA
Shewanella loihica PV-4 Shew_2238 -48 4.1 AAAATTGATCTAGATCAATAAA
Shewanella pealeana ATCC 700345 Spea_1505 -51 4.1 AAAATTGATCTAGATCAATAAA
Shewanella halifaxensis HAW-EB4 Shal_1587 -80 4 TAGTGTGATTGATATCTATAAT
Shewanella piezotolerans WP3 swp_1711 -21 4.1 AAAATTGATCTAGATCAATAAA
Shewanella sediminis HAW-EB3 Ssed_2855 -49 4.1 AAAATTGATCTAGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_1790 -48 4.1 TAAATTGATCTAGATCAATAAA
Position: -82
Score: 4.5
Sequence: TAATGTGAATGGCGTCACACAG
Locus tag: Ssed_2877
Ssed_2877 -82 4.5 TAATGTGAATGGCGTCACACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2806
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO2806 -95 4.3 TCTTGTGAATTGAGTCACATAG
Shewanella putrefaciens CN-32 Sputcn32_1554 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp W3-18-1 Sputw3181_2545 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp ANA-3 Shewana3_2588 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-4 Shewmr4_2426 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-7 Shewmr7_2496 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella baltica OS155 Sbal_1679 -94 4.2 ATCTGTGAATTAAGTCACACAG
Shewanella denitrificans OS217 Sden_1453 -35 3.9 ATATTTTATGCCGTTCACTCAT
Shewanella amazonensis SB2B Sama_1287 -85 4 AATTGTGAAGCCAGTCACGGTG
Shewanella pealeana ATCC 700345 Spea_1483 -84 4.4 AATTGTGAATAACGTCACACAG
Shewanella halifaxensis HAW-EB4 Shal_1567 -84 4.7 AATTGTGAACAACATCACACAG
Shewanella piezotolerans WP3 swp_1689 27 4.3 AACTGTGAAAGGTATCACACAC
Shewanella sediminis HAW-EB3 Ssed_2877 -82 4.5 TAATGTGAATGGCGTCACACAG
Shewanella woodyi ATCC 51908 Swoo_1771 -81 4.6 TATTGTGAAAGTCATCACACAG
Position: -173
Score: 4.7
Sequence: TAAAGTGATTTAGATCGCGTTT
Locus tag: Ssed_2897
Ssed_2897 -173 4.7 TAAAGTGATTTAGATCGCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3119
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3119 -166 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella putrefaciens CN-32 Sputcn32_2489 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp W3-18-1 Sputw3181_1519 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp ANA-3 Shewana3_1429 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-4 Shewmr4_1376 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-7 Shewmr7_1441 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella baltica OS155 Sbal_2792 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella amazonensis SB2B Sama_2198 -151 4.4 AATAGTGATTAAGCTCGCGTTT
Shewanella pealeana ATCC 700345 Spea_1466 -148 4.1 GAAAGTGATTTATATCGCGTTT
Shewanella halifaxensis HAW-EB4 Shal_1549 -148 4.1 GAAAGTGATTTATATCGCGTTT
Shewanella piezotolerans WP3 swp_1671 -220 3.8 GAAAGTGACTTAAATCGCGTTT
Shewanella sediminis HAW-EB3 Ssed_2897 -173 4.7 TAAAGTGATTTAGATCGCGTTT
Shewanella woodyi ATCC 51908 Swoo_1750 -148 4.4 TTAAGTGACTTAGATCGCGTTT
Position: -116
Score: 4.1
Sequence: GAGCGTGATTCATGTCACACTA
Locus tag: Ssed_2927
Ssed_2927 -116 4.1 GAGCGTGATTCATGTCACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fahA
Ortholog function: Fumarylacetoacetate hydrolase family protein
Shewanella oneidensis MR-1 SO1670 -200 5.1 AAATGTGATTTTGTTCACGCTA
Shewanella putrefaciens CN-32 Sputcn32_1389 -229 5 AAATGTGATTTGTGTCACGCTA
Shewanella sp W3-18-1 Sputw3181_2712 -229 5 AAATGTGATTTGTGTCACGCTA
Shewanella sp ANA-3 Shewana3_2778 -197 5.1 AAATGTGATTTTGCTCACGCTA
Shewanella sp MR-4 Shewmr4_2604 -196 5.1 AAATGTGATTTTGCTCACGCTA
Shewanella sp MR-7 Shewmr7_2671 -196 5.1 AAATGTGATTTTGCTCACGCTA
Shewanella baltica OS155 Sbal_1487 -235 5 AAATGTGATTTTGGTCACGCTA
Shewanella denitrificans OS217 Sden_2592 -107 4.7 AAATGTGATTTTGCGCACGCTA
Shewanella frigidimarina NCIMB 400 Sfri_1331 -116 4.1 AAATGTGATTTGGTACTTACTA
Shewanella amazonensis SB2B Sama_2219 -111 5 AATTGTGATTTGAGTCACGCTA
Shewanella loihica PV-4 Shew_1438 -130 4.4 GAGTGTGATTTGTATCACGCTA
Shewanella pealeana ATCC 700345 Spea_1451 -158 5.3 AAGTGTGATTTCGTTCACACTA
Shewanella halifaxensis HAW-EB4 Shal_1534 -144 4.5 CAGTGTGATTTATCTCACGCTA
Shewanella piezotolerans WP3 swp_1653 -140 5 TAGTGTGATTTAGCTCACGCTA
Shewanella sediminis HAW-EB3 Ssed_2927 -116 4.1 GAGCGTGATTCATGTCACACTA
Shewanella woodyi ATCC 51908 Swoo_1718 -133 5 TATTGTGATTTGTGTCACGCTA
Position: -75
Score: 4.8
Sequence: AACTGTGATGGAGTTAACAAAA
Locus tag: Ssed_2930
Ssed_2930 -75 4.8 AACTGTGATGGAGTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1 SO1666 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella putrefaciens CN-32 Sputcn32_1386 -75 4.7 AAGTGTGAGGGAGTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_2715 -75 4.7 AAGTGTGAGGGAGTTAACAAAA
Shewanella sp ANA-3 Shewana3_2781 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-4 Shewmr4_2607 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-7 Shewmr7_2674 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella baltica OS155 Sbal_1484 -75 4.7 AAGTGTGAGGGAGTTAACAAAT
Shewanella denitrificans OS217 Sden_2595 -61 4.1 AATTGTGCGCCATGGCACACTA
Shewanella frigidimarina NCIMB 400 Sfri_1328 -74 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella amazonensis SB2B Sama_2222 -76 4.6 AAACGTGAGGCAGTTAACAAAA
Shewanella loihica PV-4 Shew_1435 -40 4.7 AAGTGTGATCCTGTTAACAAAC
Shewanella pealeana ATCC 700345 Spea_1448 -126 4.9 AACTGTGATCGGGTTAACAATT
Shewanella halifaxensis HAW-EB4 Shal_1531 -86 4.7 AACCGTGATCTAGTTAACAAAA
Shewanella piezotolerans WP3 swp_1650 -76 5 AACTGTGATCTGGTTAACAAAA
Shewanella sediminis HAW-EB3 Ssed_2930 -75 4.8 AACTGTGATGGAGTTAACAAAA
Shewanella woodyi ATCC 51908 Swoo_1715 -74 4.7 AAGTGTGAAGTGGTTAACAAAA
Position: -243
Score: 4.5
Sequence: TTTTGTTAACTCCATCACAGTT
Locus tag: Ssed_2931
Ssed_2931 -243 4.5 TTTTGTTAACTCCATCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galU
Ortholog function: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)
Shewanella amazonensis SB2B Sama_2223 -304 4.5 TTTTGTTAACTGCCTCACGTTT
Position: -340
Score: 3.7
Sequence: TTGATTGATTTGAATCAATTTT
Position: -324
Score: 3.7
Sequence: AATTTTGAATGGTATAAAATAG
Position: -203
Score: 4
Sequence: TAGTGTGAAGTTCGTCGTAAAA
Position: -55
Score: 3.8
Sequence: ATAATCGATGGGGATCTCATTA
Locus tag: Ssed_3118
Ssed_3118 -340 3.7 TTGATTGATTTGAATCAATTTT
-324 3.7 AATTTTGAATGGTATAAAATAG
-203 4 TAGTGTGAAGTTCGTCGTAAAA
-55 3.8 ATAATCGATGGGGATCTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: cytochrome d ubiquinol oxidase, subunit I, CydA
Shewanella oneidensis MR-1 SO3286 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella putrefaciens CN-32 Sputcn32_2641 -204 4.3 TAGTGTGACGCTTGTCCCAATA
Shewanella sp W3-18-1 Sputw3181_1366 -204 4.3 TAGTGTGACGCTTGTCCCAATA
Shewanella sp ANA-3 Shewana3_1241 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella sp MR-4 Shewmr4_1239 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella sp MR-7 Shewmr7_1310 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella baltica OS155 Sbal_2979 -207 4.4 TAGTGTGACTCGCGTCTCAATA
Shewanella denitrificans OS217 Sden_1274 -157 4.1 TAAATTGATCTAAATCAATTTA
Shewanella frigidimarina NCIMB 400 Sfri_1142 -240 4.2 AAATCTAATGCTGGTCACATAA
Shewanella loihica PV-4 Shew_1302 -206 4.7 TTTTGTGAGCCGCCTCTCAAAA
Shewanella pealeana ATCC 700345 Spea_1318 -235 4 ATTCGGGATGGGTGTCACAAAG
Shewanella halifaxensis HAW-EB4 Shal_1381 -234 4.1 ATTTGGGATGAGTATCACGGAA
Shewanella piezotolerans WP3 swp_1469 -231 4.2 AGGTGAGACGGTGATCACAATA
Shewanella sediminis HAW-EB3 Ssed_3118 -203 4 TAGTGTGAAGTTCGTCGTAAAA
Shewanella woodyi ATCC 51908 Swoo_1565 -204 3.8 TTTTGTGAGATCGGTCGGAAAG
Position: -91
Score: 3.9
Sequence: TATTGAGAGAGCAAACACAAAT
Locus tag: Ssed_3162
Ssed_3162 -91 3.9 TATTGAGAGAGCAAACACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: map
Ortholog function: methionine aminopeptidase (EC 3.4.11.18)
Shewanella pealeana ATCC 700345 Spea_2886 -104 4.2 TAATTTGAAAAAAAGCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_2982 -92 3.7 TAATATGAAAAAAAGCACAAAC
Shewanella piezotolerans WP3 swp_3524 -93 4.2 TATTTTGAAAAAAAGCACAAAT
Shewanella sediminis HAW-EB3 Ssed_3162 -91 3.9 TATTGAGAGAGCAAACACAAAT
Position: -105
Score: 4.3
Sequence: ATTTGTGACCAAGTTCCCAAAC
Locus tag: Ssed_3193
Ssed_3193 -105 4.3 ATTTGTGACCAAGTTCCCAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0439
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO0439 -34 4.4 ATACGTGATCTGACGCACATCA
Shewanella putrefaciens CN-32 Sputcn32_3403 -90 4.5 AAATGTGAACCAGAGCACACTC
Shewanella sp W3-18-1 Sputw3181_0540 -90 4.5 AAATGTGAACCAGAGCACACTC
Shewanella sp ANA-3 Shewana3_0438 -78 4.2 AAGCGTGAGCTAACGCACACAA
Shewanella sp MR-4 Shewmr4_0442 -77 3.8 AAGCGTGAACTTAAGCACACTC
Shewanella sp MR-7 Shewmr7_3587 -77 3.8 AAGCGTGAACTTAAGCACACTC
Shewanella baltica OS155 Sbal_0417 -93 4.8 AAATGTGACCTAAAGCACATAC
Shewanella frigidimarina NCIMB 400 Sfri_0491 -135 5.2 TTTTATGATTTAGATCACAAAA
Shewanella pealeana ATCC 700345 Spea_0430 -137 4.8 TTTTGTGATCTAAGTAGCAAAA
Shewanella halifaxensis HAW-EB4 Shal_0486 -138 4.7 TTTTGTGACATAGGTAACACAA
Shewanella sediminis HAW-EB3 Ssed_3193 -105 4.3 ATTTGTGACCAAGTTCCCAAAC
Shewanella woodyi ATCC 51908 Swoo_0294 -78 3.9 AAACAGGACGTAGATCACACTT
Position: -267
Score: 4.6
Sequence: TTATTTGACCTGGATCACGCTT
Locus tag: Ssed_3201
Ssed_3201 -267 4.6 TTATTTGACCTGGATCACGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1603
Ortholog function: putative transcriptional regulator, inferred for PFA pathway
Shewanella pealeana ATCC 700345 Spea_2906 -269 3.9 AAGCAAGATTTAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_3007 -265 4.2 ATGTTTGAGCTAGATCACTCTT
Shewanella piezotolerans WP3 swp_3549 -268 4.5 ATATTAGATCTAAATCACACTT
-238 3.9 TAACGTTAGTTACCACACAAAA
Shewanella sediminis HAW-EB3 Ssed_3201 -267 4.6 TTATTTGACCTGGATCACGCTT
Shewanella woodyi ATCC 51908 Swoo_1424 -228 4 AAATGAAACATCTATCACACAT
Position: -252
Score: 3.8
Sequence: CGTTATAATTTCATTCACATTT
Position: -222
Score: 3.7
Sequence: AATTATATTTCTTTTCACAATT
Position: -77
Score: 4.4
Sequence: TATTGTGCGCCTGATTACATAT
Locus tag: Ssed_3221
Ssed_3221 -252 3.8 CGTTATAATTTCATTCACATTT
-222 3.7 AATTATATTTCTTTTCACAATT
-77 4.4 TATTGTGCGCCTGATTACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_4930
Ortholog function: transcriptional regulator, LysR family
Shewanella frigidimarina NCIMB 400 Sfri_2509 -114 3.9 TATTGTGACATATAGATAATAT
Shewanella pealeana ATCC 700345 Spea_4030 -80 3.8 TATTGTGGCCATAGTTACATTT
Shewanella halifaxensis HAW-EB4 Shal_0228 -81 4.3 TATTGTGCTCACAGTTACATTT
Shewanella piezotolerans WP3 swp_4930 -80 4.3 TAATGTGCCCCAAGTTACATTT
Shewanella sediminis HAW-EB3 Ssed_3221 -77 4.4 TATTGTGCGCCTGATTACATAT
Position: -306
Score: 4.8
Sequence: AAGTGTGACCCGCCTAACATTA
Locus tag: Ssed_3230
Ssed_3230 -306 4.8 AAGTGTGACCCGCCTAACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fixA
Ortholog function: electron transfer flavoprotein, beta subunit FixA
Shewanella loihica PV-4 Shew_2677 -234 4.2 AAATGTGAAGCGTGTAACATCA
Shewanella pealeana ATCC 700345 Spea_4039 -267 5.2 TTGTGTGATCTGTATAACATTA
Shewanella halifaxensis HAW-EB4 Shal_0219 -274 4.8 AAGTGTGACACACATAACATTA
Shewanella piezotolerans WP3 swp_4939 -269 4.7 AAGTGTGACGAACATAACATTA
Shewanella sediminis HAW-EB3 Ssed_3230 -306 4.8 AAGTGTGACCCGCCTAACATTA
Position: -103
Score: 4.8
Sequence: AATAGTGAGCAATCTCACATTT
Locus tag: Ssed_3317
Ssed_3317 -103 4.8 AATAGTGAGCAATCTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1539
Ortholog function: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Shewanella putrefaciens CN-32 Sputcn32_1287 -127 4.5 AATAGTGAGCGATATCACGATT
Shewanella sp W3-18-1 Sputw3181_2819 -127 4.5 AATAGTGAGCGATATCACGATT
Shewanella sp ANA-3 Shewana3_2889 -127 4.5 AATAGTGAGCAATATCACGATT
Shewanella sp MR-4 Shewmr4_2719 -127 4.5 AATAGTGAGCAATATCACGATT
Shewanella sp MR-7 Shewmr7_2790 -127 4.5 AATAGTGAGCAATATCACGATT
Shewanella baltica OS155 Sbal_1369 -128 4.5 AATAGTGAGCAATATCACGATT
Shewanella frigidimarina NCIMB 400 Sfri_2778 -313 4.7 AATAGTGAGTATTATCACATTA
Shewanella amazonensis SB2B Sama_2422 -183 4.7 TTATGTGATTTATGTCTCGATT
Shewanella loihica PV-4 Shew_2759 -171 4.4 AATAGTGAGCAATCTCACGTTT
Shewanella pealeana ATCC 700345 Spea_2979 -113 4.3 AAGAGTGAGCGATCTCACGTTT
Shewanella halifaxensis HAW-EB4 Shal_3068 -114 4.4 AATAGTGAGCAATCTCACGTTT
Shewanella piezotolerans WP3 swp_3605 -144 4.2 AAAGGTGAGCAATCTCACGTTT
Shewanella sediminis HAW-EB3 Ssed_3317 -103 4.8 AATAGTGAGCAATCTCACATTT
Shewanella woodyi ATCC 51908 Swoo_3465 -159 4.4 AATAGTGAGCAGTCTCACGTTT
Position: -151
Score: 4.7
Sequence: AAATGTGAGATTGCTCACTATT
Locus tag: Ssed_3318
Ssed_3318 -151 4.7 AAATGTGAGATTGCTCACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Shewanella oneidensis MR-1 SO1538 -149 4.7 ATTCGTGATATTGCTCACTATT
Shewanella putrefaciens CN-32 Sputcn32_1286 -148 4.7 AATCGTGATATCGCTCACTATT
Shewanella sp W3-18-1 Sputw3181_2820 -148 4.7 AATCGTGATATCGCTCACTATT
Shewanella sp ANA-3 Shewana3_2890 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella sp MR-4 Shewmr4_2720 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella sp MR-7 Shewmr7_2791 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella baltica OS155 Sbal_1368 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella denitrificans OS217 Sden_2561 -143 3.8 AAAAGGGATATTTCTCACTAAT
Shewanella frigidimarina NCIMB 400 Sfri_2779 -148 4.7 TAATGTGATAATACTCACTATT
Shewanella amazonensis SB2B Sama_2423 -89 4.5 AATCGAGACATAAATCACATAA
Shewanella loihica PV-4 Shew_2760 -150 4.4 AAACGTGAGATTGCTCACTATT
Shewanella pealeana ATCC 700345 Spea_2980 -146 4.2 AAACGTGAGATCGCTCACTCTT
Shewanella halifaxensis HAW-EB4 Shal_3069 -149 4.4 AAACGTGAGATTGCTCACTATT
Shewanella piezotolerans WP3 swp_3606 -293 4.6 AAACGTGAGATTGCTCACCTTT
Shewanella sediminis HAW-EB3 Ssed_3318 -151 4.7 AAATGTGAGATTGCTCACTATT
Shewanella woodyi ATCC 51908 Swoo_3466 -148 4.3 AAACGTGAGACTGCTCACTATT
Position: 14
Score: 4.1
Sequence: TATTATGATGTTGGACTCATTT
Locus tag: Ssed_3376
Ssed_3376 14 4.1 TATTATGATGTTGGACTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoB
Ortholog function: phosphopentomutase (EC 5.4.2.7)
Shewanella oneidensis MR-1 SO1219 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella putrefaciens CN-32 Sputcn32_2820 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella sp W3-18-1 Sputw3181_1191 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella sp ANA-3 Shewana3_1043 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-4 Shewmr4_1039 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-7 Shewmr7_1104 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella baltica OS155 Sbal_3225 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella amazonensis SB2B Sama_0975 -135 3.9 ATTTGTGATCCGCGTCGAAACG
Shewanella loihica PV-4 Shew_2813 -133 4 AAGTGTGATCTAAATCTATTTG
Shewanella pealeana ATCC 700345 Spea_3046 -138 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella halifaxensis HAW-EB4 Shal_3134 -138 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella piezotolerans WP3 swp_1231 -139 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella sediminis HAW-EB3 Ssed_3376 -134 4 AAGTGTGATCTAAATCTATTTG
Shewanella woodyi ATCC 51908 Swoo_3547 -157 4.2 AAGTGTGATCTAAATCTAGTTG
Position: -134
Score: 4
Sequence: AAGTGTGATCTAAATCTATTTG
Locus tag: Ssed_3377
Ssed_3377 -134 4 AAGTGTGATCTAAATCTATTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoA
Ortholog function: thymidine phosphorylase (EC 2.4.2.4)
Shewanella oneidensis MR-1 SO1218 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella putrefaciens CN-32 Sputcn32_2821 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella sp W3-18-1 Sputw3181_1190 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella sp ANA-3 Shewana3_1042 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-4 Shewmr4_1038 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-7 Shewmr7_1103 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella baltica OS155 Sbal_3226 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella amazonensis SB2B Sama_0974 -135 3.9 ATTTGTGATCCGCGTCGAAACG
Shewanella loihica PV-4 Shew_2814 -133 4 AAGTGTGATCTAAATCTATTTG
Shewanella pealeana ATCC 700345 Spea_3047 -138 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella halifaxensis HAW-EB4 Shal_3135 -138 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella piezotolerans WP3 swp_1230 -139 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella sediminis HAW-EB3 Ssed_3377 -134 4 AAGTGTGATCTAAATCTATTTG
Shewanella woodyi ATCC 51908 Swoo_3548 -157 4.2 AAGTGTGATCTAAATCTAGTTG
Position: -245
Score: 3.9
Sequence: CTGTGTGAGGATAAACACAATT
Locus tag: Ssed_3379
Ssed_3379 -245 3.9 CTGTGTGAGGATAAACACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tsx
Ortholog function: nucleoside-specific channel-forming protein, Tsx
Shewanella putrefaciens CN-32 Sputcn32_2823 -268 3.8 AATAGTGATTTCTGTCGTGAAT
Shewanella sp W3-18-1 Sputw3181_1188 -268 3.8 AATAGTGATTTCTGTCGTGAAT
Shewanella sp ANA-3 Shewana3_1040 -144 4.2 AGTCGCGACTTTGTTCACAATT
Shewanella sp MR-4 Shewmr4_1036 -144 4.2 AGTCGCGACTTTGTTCACAATT
Shewanella sp MR-7 Shewmr7_1101 -144 4.2 AGTCGCGACTTTGTTCACAATT
Shewanella baltica OS155 Sbal_3228 -145 4.2 AGTCGCGACTTTGTTCACAATT
Shewanella denitrificans OS217 Sden_1024 -145 4 AGTCACGATATTGTTCACATAT
Shewanella frigidimarina NCIMB 400 Sfri_1001 -146 4.2 AGTCGCGACATTGTTCACAAAA
Shewanella loihica PV-4 Shew_2816 -99 4 TATTGTGATTTAATACAATTTG
Shewanella sediminis HAW-EB3 Ssed_3379 -245 3.9 CTGTGTGAGGATAAACACAATT
Shewanella woodyi ATCC 51908 Swoo_3550 -103 3.7 TGTTGTGCTTTAGCACAGAATA
Position: -227
Score: 3.8
Sequence: TTTTGTACTGTTTTTAAAATAA
Locus tag: Ssed_3418
Ssed_3418 -227 3.8 TTTTGTACTGTTTTTAAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3089
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_0956 -213 4.6 TTATGTGAAGCAGATCGCCATT
Shewanella sp W3-18-1 Sputw3181_3220 -213 4.6 TTATGTGAAGCAGATCGCCATT
Shewanella baltica OS155 Sbal_0942 -213 4.6 TTATGTGAAGCAGATCGCCATT
Shewanella frigidimarina NCIMB 400 Sfri_0964 -141 4.5 TTTTGTGAATTAAAGCAAATAA
Shewanella pealeana ATCC 700345 Spea_3089 -256 4.3 TTTTGCGATTCAGATCACTTTG
Shewanella halifaxensis HAW-EB4 Shal_3174 -268 4.5 TTCCGTGATCAATATCACCTTA
-40 3.7 ATTTGAGATTCTATTTACAACT
Shewanella sediminis HAW-EB3 Ssed_3418 -227 3.8 TTTTGTACTGTTTTTAAAATAA
Shewanella sediminis HAW-EB3 Ssed_3419 -227 3.9 ATTTCAGATATAAATCAAAAAA
Position: -227
Score: 3.9
Sequence: ATTTCAGATATAAATCAAAAAA
Locus tag: Ssed_3419
Ssed_3419 -227 3.9 ATTTCAGATATAAATCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3089
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_0956 -213 4.6 TTATGTGAAGCAGATCGCCATT
Shewanella sp W3-18-1 Sputw3181_3220 -213 4.6 TTATGTGAAGCAGATCGCCATT
Shewanella baltica OS155 Sbal_0942 -213 4.6 TTATGTGAAGCAGATCGCCATT
Shewanella frigidimarina NCIMB 400 Sfri_0964 -141 4.5 TTTTGTGAATTAAAGCAAATAA
Shewanella pealeana ATCC 700345 Spea_3089 -256 4.3 TTTTGCGATTCAGATCACTTTG
Shewanella halifaxensis HAW-EB4 Shal_3174 -268 4.5 TTCCGTGATCAATATCACCTTA
-40 3.7 ATTTGAGATTCTATTTACAACT
Shewanella sediminis HAW-EB3 Ssed_3418 -227 3.8 TTTTGTACTGTTTTTAAAATAA
Shewanella sediminis HAW-EB3 Ssed_3419 -227 3.9 ATTTCAGATATAAATCAAAAAA
Position: -130
Score: 4.1
Sequence: CAGCGTGATTGCGGTCGCATTT
Locus tag: Ssed_3431
Ssed_3431 -130 4.1 CAGCGTGATTGCGGTCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA-2
Ortholog function: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Shewanella oneidensis MR-1 SO1103 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella putrefaciens CN-32 Sputcn32_0940 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp W3-18-1 Sputw3181_3236 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp ANA-3 Shewana3_0938 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-4 Shewmr4_0936 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-7 Shewmr7_0974 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella baltica OS155 Sbal_0924 -128 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella denitrificans OS217 Sden_0982 -128 4.3 CAGCGTGATTGCGATCGCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0949 -127 4.3 CAGCGTGATTATGATCGCATTT
Shewanella amazonensis SB2B Sama_2539 -127 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella loihica PV-4 Shew_2881 -131 4.3 CAGCGTGATTGCGATCGCATTT
-73 4.1 ATGTTTGAAATCTATCTCATTT
Shewanella pealeana ATCC 700345 Spea_3103 -133 4.4 CAGCGTGATTCTGATCGCATTT
Shewanella halifaxensis HAW-EB4 Shal_3187 -127 3.7 CAGCGTGATTACAGTCGCACTT
Shewanella piezotolerans WP3 swp_1167 -132 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sediminis HAW-EB3 Ssed_3431 -130 4.1 CAGCGTGATTGCGGTCGCATTT
Shewanella woodyi ATCC 51908 Swoo_3617 -46 4 CAGCGTGATTGCGGTCGCAAAT
Position: -203
Score: 4.3
Sequence: TAACGTGATGAAAGTAAAATTT
Locus tag: Ssed_3439
Ssed_3439 -203 4.3 TAACGTGATGAAAGTAAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3811
Ortholog function: lipoprotein, putative
Shewanella putrefaciens CN-32 Sputcn32_0822 -116 4.4 TAATGTGATTGGTATAATATAC
Shewanella sp W3-18-1 Sputw3181_3351 -116 4.4 TAATGTGATTGGTATAATATAC
Shewanella sp ANA-3 Shewana3_0786 -142 4.1 AATTGTTAAGTATTTCATATTG
Shewanella sp MR-4 Shewmr4_3152 -142 4.1 AATTGTTAAGTATTTCATATTG
Shewanella sp MR-7 Shewmr7_0815 -142 4.1 AATTGTTAAGTATTTCATATTG
Shewanella sediminis HAW-EB3 Ssed_3439 -203 4.3 TAACGTGATGAAAGTAAAATTT
Position: -75
Score: 5.3
Sequence: AAATGTGATCTAGCTTACATTT
Locus tag: Ssed_3491
Ssed_3491 -75 5.3 AAATGTGATCTAGCTTACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lipB
Ortholog function: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Shewanella oneidensis MR-1 SO1162 -68 5.1 AAGTGTGATCTATCTTACATTT
Shewanella putrefaciens CN-32 Sputcn32_2875 -69 5.3 AAATGTGATCTATCTTACATTT
Shewanella sp W3-18-1 Sputw3181_1028 -75 5.3 AAATGTGATCTATCTTACATTT
Shewanella sp ANA-3 Shewana3_0989 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella sp MR-4 Shewmr4_0985 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella sp MR-7 Shewmr7_1050 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella baltica OS155 Sbal_3281 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella loihica PV-4 Shew_2941 -70 5.3 AAATGTGATCTACCTTACATTT
Shewanella pealeana ATCC 700345 Spea_3155 -76 5.2 AAATGTGATCCGTATTACATTT
Shewanella halifaxensis HAW-EB4 Shal_3240 -76 5.2 AAATGTGATCCGTATTACATTT
Shewanella piezotolerans WP3 swp_3928 -69 5.2 AAATGTGATCTGTCTTACATTT
Shewanella sediminis HAW-EB3 Ssed_3491 -75 5.3 AAATGTGATCTAGCTTACATTT
Shewanella woodyi ATCC 51908 Swoo_3714 -74 5.1 AAGTGTGATCTAGCTTACAATT
Position: -87
Score: 3.7
Sequence: AAACGCAACAAAGATCACACTT
Locus tag: Ssed_3518
Ssed_3518 -87 3.7 AAACGCAACAAAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sfcA
Ortholog function: NAD-dependent malic enzyme (EC 1.1.1.38)
Shewanella oneidensis MR-1 SO3855 -66 4 TTACGTGACCTATAGCACGTCT
Shewanella putrefaciens CN-32 Sputcn32_0784 -54 4.4 TTACGTGACTTAAAGCACGTAT
Shewanella sp W3-18-1 Sputw3181_3391 -54 4.4 TTACGTGACTTAAAGCACGTAT
Shewanella sp ANA-3 Shewana3_0750 -65 3.9 TTACGTGACTTACAGCACGTCT
Shewanella sp MR-4 Shewmr4_3188 -66 3.9 TTACGTGACTTACAGCACGTCT
Shewanella sp MR-7 Shewmr7_0778 -66 3.9 TTACGTGACTTACAGCACGTCT
Shewanella baltica OS155 Sbal_0676 -55 4.4 TTACGTGACTTACAGCACGTAT
Shewanella frigidimarina NCIMB 400 Sfri_0833 -122 5 TAATGTGATTTTACTCACTTAA
Shewanella sediminis HAW-EB3 Ssed_3518 -87 3.7 AAACGCAACAAAGATCACACTT
Position: -7
Score: 3.2
Sequence: ATCAATTATGGATATCTCAAAA
Locus tag: Ssed_3562
Ssed_3562 -7 3.2 ATCAATTATGGATATCTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfC
Ortholog function: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Shewanella putrefaciens CN-32 Sputcn32_0314 -99 4.3 AAGTGTGATGCTGGTCAATAAA
Shewanella sp W3-18-1 Sputw3181_3894 -99 4.2 AAGTGTGATACTGGTCAATAAA
Shewanella sp ANA-3 Shewana3_3961 -99 5.2 AAATGTGATCTATGTCAAAAAA
Shewanella sp MR-4 Shewmr4_3763 -99 5.2 AAATGTGATCTATGTCAAAAAA
Shewanella sp MR-7 Shewmr7_3836 -99 5.2 AAATGTGATCTGTGTCAAAAAA
Shewanella baltica OS155 Sbal_0182 -97 5.2 AAATGTGATCGTGTTCAAAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0614 -115 3.7 TTAATTGATTACGATCAATTTA
Shewanella amazonensis SB2B Sama_2903 -285 4.1 AAAAGAGACTTAGATCATATTT
Shewanella loihica PV-4 Shew_3157 -286 3.9 AAAATAGATCTTGATCATATTT
Shewanella pealeana ATCC 700345 Spea_3966 -127 3.4 TTTTATGATGAATAAAACGTTC
Shewanella halifaxensis HAW-EB4 Shal_0302 -100 3.6 ATAATTGATTTGTATCAATGTT
Shewanella piezotolerans WP3 swp_4116 -97 3.3 TTATATAATGATTTTTATATTT
Shewanella sediminis HAW-EB3 Ssed_0242 -100 4.1 TTGTTTGATTTAAATCAAGGTT
Shewanella woodyi ATCC 51908 Swoo_0241 -92 4 TAACTTGATTTGAATCAATATT
Position: -337
Score: 3.9
Sequence: ATATGTGAATTTCATAAATTAA
Locus tag: Ssed_3564
Ssed_3564 -337 3.9 ATATGTGAATTTCATAAATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0312
Ortholog function: hypothetical protein
Shewanella amazonensis SB2B Sama_2901 -285 4.1 AAAAGAGACTTAGATCATATTT
Shewanella loihica PV-4 Shew_3155 -286 3.9 AAAATAGATCTTGATCATATTT
Shewanella piezotolerans WP3 swp_4118 -97 3.3 TTATATAATGATTTTTATATTT
Position: -184
Score: 5.1
Sequence: ATGTGTGACCAGGTTCACAATT
Locus tag: Ssed_3566
Ssed_3566 -184 5.1 ATGTGTGACCAGGTTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_2899
Ortholog function: transcriptional regulator, LysR family
Shewanella amazonensis SB2B Sama_2899 -126 4.2 AACTGTGATCTGAACCGCAGAA
Shewanella loihica PV-4 Shew_3153 -137 4.2 AACTGTGATGTGATCCGCAGAA
Shewanella piezotolerans WP3 swp_4120 -157 4.2 TATTGTGACCGGTTACGCAGTA
Shewanella sediminis HAW-EB3 Ssed_3566 -184 5.1 ATGTGTGACCAGGTTCACAATT
Position: -135
Score: 5.4
Sequence: TAATGTGATCTATTTCTCATAT
Locus tag: Ssed_3695
Ssed_3695 -135 5.4 TAATGTGATCTATTTCTCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD-2
Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella putrefaciens CN-32 Sputcn32_0970 -118 4.6 CGTTGTGATGTTTTTCACGATA
Shewanella sp W3-18-1 Sputw3181_3197 -117 4.6 CGTTGTGATGTTTTTCACGATA
Shewanella frigidimarina NCIMB 400 Sfri_3097 -256 5 TTTGGTGACATAGATCACATAT
Shewanella piezotolerans WP3 swp_3965 -222 3.7 ATGCGCGATTTGCATTACCTTT
Shewanella sediminis HAW-EB3 Ssed_3695 -135 5.4 TAATGTGATCTATTTCTCATAT
Shewanella woodyi ATCC 51908 Swoo_3995 -147 3.7 AACCATGATCTATTTCGTAATT
Position: -111
Score: 4.2
Sequence: CAGTGTGATCTCGATCAACTTC
Locus tag: Ssed_3715
Ssed_3715 -111 4.2 CAGTGTGATCTCGATCAACTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3682
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3682 -109 3.8 TTGCGTGATTTTGTGCAAGCAT
Shewanella putrefaciens CN-32 Sputcn32_2981 -76 3.8 ATTTTTGAGCAAGATCACGGCT
Shewanella sp W3-18-1 Sputw3181_0966 -76 3.8 ATTTTTGAGCAAGATCACGGCT
Shewanella sp MR-4 Shewmr4_0873 -166 3.7 TGACGTGATTTGTGGCGTATAA
Shewanella sp MR-7 Shewmr7_3149 -166 3.7 TGACGTGATTTGTGGCGTATAA
Shewanella baltica OS155 Sbal_3331 -76 3.7 ATTTTTGAGCAATATCACGGCT
Shewanella amazonensis SB2B Sama_2854 -78 4 AAACTTGATCTGGATCACGAGT
Shewanella loihica PV-4 Shew_3102 -84 4.2 AAATGTGATCTGGATCAAGTGG
Shewanella pealeana ATCC 700345 Spea_3356 -102 4.7 AATTGTGAGCTAGATCAAACTC
Shewanella halifaxensis HAW-EB4 Shal_3428 -90 4.8 AATTGTGACTGAGATCAAATTC
Shewanella piezotolerans WP3 swp_1054 -79 4.3 TTTTGTGAGCAAGATCAACTTC
Shewanella sediminis HAW-EB3 Ssed_3715 -111 4.2 CAGTGTGATCTCGATCAACTTC
Position: -120
Score: 4.9
Sequence: ATTTGTGATGCAGGTAAAATTT
Position: -78
Score: 4
Sequence: TGCCGTGATCTGTTTCATGTAA
Locus tag: Ssed_3790
Ssed_3790 -120 4.9 ATTTGTGATGCAGGTAAAATTT
-78 4 TGCCGTGATCTGTTTCATGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemG
Ortholog function: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Shewanella putrefaciens CN-32 Sputcn32_3038 -207 4.5 TTTTGTGAGCAAGCTAAAATTA
-135 3.9 AATTGATATTTAAATCACCTAG
Shewanella sp W3-18-1 Sputw3181_0907 -207 4.5 TTTTGTGAGCAAGCTAAAATTA
-135 3.9 AATTGATATTTAAATCACCTAG
Shewanella sp ANA-3 Shewana3_0871 -317 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-4 Shewmr4_3066 -320 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-7 Shewmr7_0906 -318 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella baltica OS155 Sbal_3400 -316 4.4 TTTTGTGAGACAGTTAAAACTA
Shewanella frigidimarina NCIMB 400 Sfri_0813 -144 4 TTTTGCGCGGCAGTTCACATTG
-83 4.4 TGACGTGATCTGTTTCATGTAA
Shewanella amazonensis SB2B Sama_2882 -130 3.9 AAATGTGAGGCAGTTGGAATTT
Shewanella loihica PV-4 Shew_0678 -126 4.1 ATTTGTGACATCGGTAAACTTA
Shewanella pealeana ATCC 700345 Spea_0673 -140 4 TTTTGTGAGGTAGGTAAAGCTA
-98 3.8 CCTCGTGATCTGTTTCATGTAA
Shewanella halifaxensis HAW-EB4 Shal_3525 -139 4 TTTTGTGAGGTAGGTAAAGCTA
-97 3.8 CCTCGTGATCTGTTTCATGTAA
Shewanella piezotolerans WP3 swp_4046 -124 3.9 TTTTGTGAGGTAGGTAAAGGTA
-77 3.7 TGATCTGATTCAATTAAAAATA
Shewanella sediminis HAW-EB3 Ssed_3790 -120 4.9 ATTTGTGATGCAGGTAAAATTT
-78 4 TGCCGTGATCTGTTTCATGTAA
Shewanella woodyi ATCC 51908 Swoo_0793 -123 4.3 AATTGTGATATAGGTAAGAGTA
Position: -162
Score: 4
Sequence: AATGGTGTCCCTCGTCACATTT
Locus tag: Ssed_3846
Ssed_3846 -162 4 AATGGTGTCCCTCGTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3774
Ortholog function: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shewanella oneidensis MR-1 SO3774 -146 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella putrefaciens CN-32 Sputcn32_3099 -128 3.8 GATAGTGTTGTCCGTCACATTT
Shewanella sp W3-18-1 Sputw3181_0845 -128 3.8 GATAGTGTTGTCCGTCACATTT
Shewanella sp ANA-3 Shewana3_0819 -131 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella sp MR-4 Shewmr4_3122 -132 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella sp MR-7 Shewmr7_0850 -131 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella baltica OS155 Sbal_3458 -128 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_0568 -172 3.8 TTCAGTGAACAAAATCAAACAA
-131 4.1 TTGAGTGTCCAAGTTCACATTT
Shewanella loihica PV-4 Shew_0615 -146 3.9 AAGAGTGTCCCTCGTCACATTT
Shewanella pealeana ATCC 700345 Spea_3490 -127 3.9 ATTATTGCCACTCATCACATTT
Shewanella piezotolerans WP3 swp_0809 -137 3.9 AAAGGTGTCGCTCGTCACATTT
Shewanella sediminis HAW-EB3 Ssed_3846 -162 4 AATGGTGTCCCTCGTCACATTT
Shewanella woodyi ATCC 51908 Swoo_0714 -176 3.9 AAGAGTGTCCCTCGTCACATTT
Position: -139
Score: 4.1
Sequence: AAAATTGATCTAGCTCAATTTT
Position: -120
Score: 4.7
Sequence: TTTTGTGAATCCGTTAACAATT
Locus tag: Ssed_3849
Ssed_3849 -139 4.1 AAAATTGATCTAGCTCAATTTT
-120 4.7 TTTTGTGAATCCGTTAACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydD
Ortholog function: Transport ATP-binding protein CydD
Shewanella oneidensis MR-1 SO3780 -191 4.4 TTTATTGATCAGCATCGCATTT
Shewanella putrefaciens CN-32 Sputcn32_3106 -169 4.7 TTTTGTGAATCGGTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_0838 -169 4.7 TTTTGTGAATCGGTTAACAAAA
Shewanella sp ANA-3 Shewana3_0812 -187 4.4 TTTATTGATCTTTATCTCATTT
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-4 Shewmr4_3127 -187 4.4 TTTATTGATCTTTATCTCATTT
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-7 Shewmr7_0840 -187 4.4 TTTATTGATCTTTATCTCATTT
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella baltica OS155 Sbal_3463 -170 4.3 TTTTGTGAGTCTGCTAGCAAAA
Shewanella frigidimarina NCIMB 400 Sfri_3213 -214 4.2 TATTGTGTTGCAATTAACAATG
-104 5 AAATGTGAATCAGATAACATTT
Shewanella amazonensis SB2B Sama_2679 -137 4.2 TTTTTTGATCCAGCGCAAATTC
-118 4.2 TTCTGTGAATCCCCTAACAAAT
Shewanella loihica PV-4 Shew_0613 -129 4.5 TTTTTTGATCTAGCTCAATTTT
-110 4.8 TTTTGTGAGCCTAATAACAATT
Shewanella pealeana ATCC 700345 Spea_3494 -185 4.1 TTTATTGATCTAGCTCAATTTT
-166 4.4 TTTTGTGAGTCCGATAGCAAAT
Shewanella halifaxensis HAW-EB4 Shal_3589 -233 4.1 TTTATTGATCTAGCTCAATTTT
-214 4.9 TTTTGTGAGTCCGATAACATTT
Shewanella sediminis HAW-EB3 Ssed_3849 -139 4.1 AAAATTGATCTAGCTCAATTTT
-120 4.7 TTTTGTGAATCCGTTAACAATT
Shewanella woodyi ATCC 51908 Swoo_0710 -149 4.1 TTTATTGATCTAGCTCAATTTT
-130 4.7 TTTTGTGAATCTCTTAACATTT
Position: -296
Score: 4.3
Sequence: ATTAGTGATATAAGTCAACTAA
Locus tag: Ssed_3872
Ssed_3872 -296 4.3 ATTAGTGATATAAGTCAACTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sel1
Ortholog function: Sel1 domain protein repeat-containing protein precursor
Shewanella oneidensis MR-1 SO0625 -267 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella putrefaciens CN-32 Sputcn32_0653 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp W3-18-1 Sputw3181_3521 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp ANA-3 Shewana3_0618 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp MR-4 Shewmr4_0619 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp MR-7 Shewmr7_3411 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella baltica OS155 Sbal_0579 -278 4.4 TTTAGTGATTTAAGTCAACTAA
Shewanella frigidimarina NCIMB 400 Sfri_3291 -222 4.1 AACTTTGATAGAGATCGTATTT
-147 4.3 ATTTGTGATGACGGTCGACTTT
-38 4 TTATTTAATCAGCTTCATAAAT
Shewanella amazonensis SB2B Sama_3003 -319 3.8 AACCATGATGCAGATCGAAATT
Shewanella loihica PV-4 Shew_0586 -279 3.8 ATTAGTAATATATGTCAACTAA
Shewanella piezotolerans WP3 swp_0756 -153 3.8 TTTTTTGAACCTTATCAATAAA
Shewanella sediminis HAW-EB3 Ssed_3872 -296 4.3 ATTAGTGATATAAGTCAACTAA
Shewanella woodyi ATCC 51908 Swoo_0663 -298 4.3 ATTAGTGATATAAGTCAACTAA
Position: -173
Score: 3.8
Sequence: TTAGTTGACTTATATCACTAAT
Locus tag: Ssed_3873
Ssed_3873 -173 3.8 TTAGTTGACTTATATCACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: Cyclic AMP receptor protein Crp
Shewanella oneidensis MR-1 SO0624 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella putrefaciens CN-32 Sputcn32_0652 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp W3-18-1 Sputw3181_3522 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp ANA-3 Shewana3_0617 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-4 Shewmr4_0618 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-7 Shewmr7_3412 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella baltica OS155 Sbal_0578 -174 3.7 TTAGTTGACTTAAATCACTAAA
Shewanella denitrificans OS217 Sden_3190 -94 3.6 AAACACGATCTTGGTCAAAGTT
Shewanella frigidimarina NCIMB 400 Sfri_3292 -97 4 AAATACGATCTCTATCAAAGTT
Shewanella amazonensis SB2B Sama_3004 -96 3.8 AATTTCGATCTGCATCATGGTT
Shewanella loihica PV-4 Shew_0585 -238 4 AGATGTGATATGGGCAACATTG
Shewanella pealeana ATCC 700345 Spea_3509 -225 3.6 AGATGTGATATAAGCCTAATTG
Shewanella halifaxensis HAW-EB4 Shal_3603 -226 3.5 AGATGTGATACAAGCCTAATTG
Shewanella piezotolerans WP3 swp_0755 -309 4.2 TTTATTGATAAGGTTCAAAAAA
Shewanella sediminis HAW-EB3 Ssed_3873 -173 3.8 TTAGTTGACTTATATCACTAAT
Shewanella woodyi ATCC 51908 Swoo_0662 -173 3.8 TTAGTTGACTTATATCACTAAT
Position: -107
Score: 4.2
Sequence: TTTGTTGATCCTTATCAAAAAA
Locus tag: Ssed_3889
Ssed_3889 -107 4.2 TTTGTTGATCCTTATCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_4035
Ortholog function: Conserved hypothetical signal peptide protein
Shewanella denitrificans OS217 Sden_0638 -116 4 TTCTTTGATGTTAATCAAGCAT
Shewanella frigidimarina NCIMB 400 Sfri_4035 -131 3.8 ATATGTGACATACGCATCATAA
Shewanella amazonensis SB2B Sama_0589 -108 3.8 TTTGTTGATCTGGATCATTAAT
Shewanella loihica PV-4 Shew_3120 -108 4.2 TTTGTTGATCTTAATCAAAAAA
Shewanella pealeana ATCC 700345 Spea_0712 -106 4.4 ATTATTGATCTTTATCAAAAAA
Shewanella piezotolerans WP3 swp_4367 -104 4.1 AACCTTGATCTTAATCATAATT
Shewanella sediminis HAW-EB3 Ssed_3889 -107 4.2 TTTGTTGATCCTTATCAAAAAA
Shewanella woodyi ATCC 51908 Swoo_3788 -106 3.9 TTTGTTGATCTTAATCAAAAAC
Position: -187
Score: 4.1
Sequence: ATCTGAGACATAGGTCACACAT
Locus tag: Ssed_3956
Ssed_3956 -187 4.1 ATCTGAGACATAGGTCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: periplasmic nitrate reductase component NapD
Shewanella oneidensis MR-1 SO0849 -260 3.9 TAATGTGATTGGTATAAACCTC
-150 3.9 AACTTTGATCCCGATCGACTAT
Shewanella putrefaciens CN-32 Sputcn32_3147 -147 3.9 AACTTTGATCCCGATCGACTAT
Shewanella sp W3-18-1 Sputw3181_0796 -147 3.9 AACTTTGATCCCGATCGACTAT
Shewanella sp ANA-3 Shewana3_3429 -149 3.9 AACTTTGATCCCGATCGACTAT
Shewanella sp MR-4 Shewmr4_0705 -149 3.9 AACTTTGATCCCGATCGACTAT
Shewanella sp MR-7 Shewmr7_3317 -149 3.9 AACTTTGATCCCGATCGACTAT
Shewanella baltica OS155 Sbal_3510 -150 4 AACTTTGATCCGGATCGACTAT
Shewanella loihica PV-4 Shew_3205 -154 3.8 AACTTTGATCTCGATCTACAAA
Shewanella pealeana ATCC 700345 Spea_0624 -173 4.3 ATTTGTGAACTAGATCAACACT
Shewanella halifaxensis HAW-EB4 Shal_0716 -174 4.2 ATCTGTGAATCAGATCACCATG
Shewanella sediminis HAW-EB3 Ssed_3956 -187 4.1 ATCTGAGACATAGGTCACACAT
Shewanella woodyi ATCC 51908 Swoo_4109 -179 4.4 AAATGTGAACTCCATCACGCAC
-155 3.9 AATATTGATCTTGATCGACTAA
Position: -324
Score: 5
Sequence: TTTTGTGATTCTTATCACGCAT
Position: -294
Score: 4.6
Sequence: TTGTGTGATATCAATCATCTTT
Position: -200
Score: 3.8
Sequence: TTTTGTGAACTTGATTAACAAG
Locus tag: Ssed_4007
Ssed_4007 -324 5 TTTTGTGATTCTTATCACGCAT
-294 4.6 TTGTGTGATATCAATCATCTTT
-200 3.8 TTTTGTGAACTTGATTAACAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3895
Ortholog function: HesA/MoeB/ThiF family protein related to EC-YgdL
Shewanella putrefaciens CN-32 Sputcn32_0780 -317 4.9 AAATGCGATATAGATCACAAAC
Shewanella sp W3-18-1 Sputw3181_3395 -317 4.9 AAATGCGATATAGATCACAAAC
Shewanella sp ANA-3 Shewana3_0735 -308 4.5 AAATGTGATCTTGATCACTTGA
Shewanella sp MR-4 Shewmr4_3226 -309 3.9 AAATGTGATCTGGATCATTGGA
Shewanella sp MR-7 Shewmr7_0763 -309 3.9 AAATGTGATCTGGATCATTGGA
Shewanella baltica OS155 Sbal_3568 -321 5 AAGTGTGATCTGGATCAAGTTT
Shewanella frigidimarina NCIMB 400 Sfri_0504 -251 4 TATCTTGATGAGTTTAACCAAT
Shewanella amazonensis SB2B Sama_0546 -214 4.8 AAGTGTGATCACTATCACATCA
Shewanella loihica PV-4 Shew_3251 -226 4.6 AGGTGTGATCCGTGTCGCAAAT
-196 3.8 TTACGTGAGTTTTATCATGTTG
Shewanella pealeana ATCC 700345 Spea_0591 -259 4.3 ATGTGTGACGCTTGTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_0678 -253 4.8 GTTTGTGATGTCTATCACGTTT
Shewanella piezotolerans WP3 swp_4512 -245 3.8 CGATGTGATCTTGATCTGGTTT
-215 3.9 ATGTGTGATATTAATCATAGGT
Shewanella sediminis HAW-EB3 Ssed_4007 -324 5 TTTTGTGATTCTTATCACGCAT
-294 4.6 TTGTGTGATATCAATCATCTTT
-200 3.8 TTTTGTGAACTTGATTAACAAG
Shewanella woodyi ATCC 51908 Swoo_4150 -290 5.1 CTTTGTGATATCAATCACAATA
Position: -223
Score: 4.3
Sequence: AAAGATGATTGATATCACACAA
Position: -193
Score: 4.8
Sequence: ATGCGTGATAAGAATCACAAAA
Locus tag: Ssed_4008
Ssed_4008 -223 4.3 AAAGATGATTGATATCACACAA
-193 4.8 ATGCGTGATAAGAATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shewana3_0734
Ortholog function: outer membrane porin, putative
Shewanella sp ANA-3 Shewana3_0734 -130 4.8 TCAAGTGATCAAGATCACATTT
Shewanella sp MR-4 Shewmr4_3227 -130 4 TCCAATGATCCAGATCACATTT
Shewanella sp MR-7 Shewmr7_0762 -130 4 TCCAATGATCCAGATCACATTT
Shewanella baltica OS155 Sbal_3569 -127 4.9 AAACTTGATCCAGATCACACTT
Shewanella amazonensis SB2B Sama_0545 -112 5.1 TGATGTGATAGTGATCACACTT
Shewanella loihica PV-4 Shew_3252 -193 3.8 CAACATGATAAAACTCACGTAA
-163 4.2 ATTTGCGACACGGATCACACCT
Shewanella piezotolerans WP3 swp_4513 -177 3.9 ACCTATGATTAATATCACACAT
Shewanella sediminis HAW-EB3 Ssed_4008 -223 4.3 AAAGATGATTGATATCACACAA
-193 4.8 ATGCGTGATAAGAATCACAAAA
Position: -151
Score: 4.4
Sequence: AAACATGATCTAGTCCACAATT
Locus tag: Ssed_4009
Ssed_4009 -151 4.4 AAACATGATCTAGTCCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp35
Ortholog function: outer membrane porin
Shewanella oneidensis MR-1 SO3896 -67 4.1 AAATGTGTTAAACCACACAAAA
Shewanella sp ANA-3 Shewana3_0733 -67 4.1 AAATGTGTTAAACCACACAAAA
Shewanella sp MR-4 Shewmr4_3228 -67 3.7 AAATGTGTAAAACCACACAAAA
Shewanella sp MR-7 Shewmr7_0761 -67 3.7 AAATGTGTAAAACCACACAAAA
Shewanella baltica OS155 Sbal_3570 -67 3.6 AAATGCGTTAAACCACACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0503 -145 4.5 TTATTTGATCTAGGCCACACTA
Shewanella loihica PV-4 Shew_3260 -150 4.1 AAATTTGATCTGCGCCACACTC
Shewanella pealeana ATCC 700345 Spea_0589 -150 4.4 AAACATGATCTAGTCCACAATT
Shewanella halifaxensis HAW-EB4 Shal_0676 -150 4.4 AAACATGATCTAGTCCACAATT
Shewanella piezotolerans WP3 swp_4514 -150 4.1 AAACTTGATCTAGCCCACAATC
Shewanella sediminis HAW-EB3 Ssed_4009 -151 4.4 AAACATGATCTAGTCCACAATT
Shewanella woodyi ATCC 51908 Swoo_4152 -241 3.3 AATTATTAACTCTTTCTTAAAT
Shewanella woodyi ATCC 51908 Swoo_4151 -149 4.3 AAGTTTGATCTAGTCCACAATC
Position: -228
Score: 3.9
Sequence: ACATTAGATAAATATCACATTT
Locus tag: Ssed_4047
Ssed_4047 -228 3.9 ACATTAGATAAATATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: polysulfide reductase, subunit A
Shewanella sp ANA-3 Shewana3_3619 -278 3.8 TCTATTGATCCTATTCACGAAT
Shewanella sp MR-4 Shewmr4_3444 -273 4 CTTATTGATCTTATTCACGATT
Shewanella sp MR-7 Shewmr7_0507 -273 4 CTTATTGATCTTATTCACGATT
Shewanella frigidimarina NCIMB 400 Sfri_1999 -181 3.8 AACCGTGACATCAATCAAATCA
Shewanella pealeana ATCC 700345 Spea_3039 -182 4.4 AACTGTGAATTGCCTCACAAAC
Shewanella halifaxensis HAW-EB4 Shal_3127 -183 4.5 AACTGTGAATTGCTTCACAAAC
Shewanella piezotolerans WP3 swp_1238 -191 4.4 AACTGTGAAACAACTCACAAAG
Shewanella sediminis HAW-EB3 Ssed_4047 -228 3.9 ACATTAGATAAATATCACATTT
Position: -112
Score: 4.7
Sequence: AAAGGTGATCAACATCAAATTT
Locus tag: Ssed_4058
Ssed_4058 -112 4.7 AAAGGTGATCAACATCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4142
Ortholog function: cytochrome c family protein
Shewanella oneidensis MR-1 SO4142 -121 3.9 GAAAGTGACACACCTCAAATAA
Shewanella sp ANA-3 Shewana3_3688 -118 4.2 GAAAGTGATACACCTCAAATAA
Shewanella sp MR-4 Shewmr4_3511 -118 4.2 GAAAGTGATACACCTCAAATAA
Shewanella sp MR-7 Shewmr7_0441 -122 4 GAAGGTGATACACCTCAAATAA
Shewanella frigidimarina NCIMB 400 Sfri_3554 -112 4 GGATATGATCTACTTCAAATTA
Shewanella amazonensis SB2B Sama_3178 -268 3.9 AAACGTCACATAGATCACACAC
Shewanella loihica PV-4 Shew_0516 -113 4.1 GAAGGTGATCAACATCAAATTT
Shewanella halifaxensis HAW-EB4 Shal_0616 -289 3.8 AAGTGTGATCTAGATCTGTTAC
Shewanella piezotolerans WP3 swp_4577 -133 4 GAAAGTGATCGAGCTCAACTAT
Shewanella sediminis HAW-EB3 Ssed_4058 -112 4.7 AAAGGTGATCAACATCAAATTT
Position: -9
Score: 4.4
Sequence: ATATTTGATATGTATCACCTCA
Locus tag: Ssed_4064
Ssed_4064 -9 4.4 ATATTTGATATGTATCACCTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4154
Ortholog function: transcriptional regulator, LysR family
Shewanella oneidensis MR-1 SO4154 -69 3.7 AATTGTGCATTAGTTAATCTAT
-9 4.9 TAATTTGATATGTATCATATAA
Shewanella sp ANA-3 Shewana3_3695 -9 4.3 TAATTTGATATGTACCATATAA
Shewanella loihica PV-4 Shew_0506 -30 3.9 TATTGAAATCATTTTCAAAAAA
-9 4 ATTTTTGATATGTATCATCTCA
Shewanella piezotolerans WP3 swp_4588 -9 4.4 ATATTTGATATGTACCACCTTA
Shewanella sediminis HAW-EB3 Ssed_4064 -9 4.4 ATATTTGATATGTATCACCTCA
Shewanella woodyi ATCC 51908 Swoo_0591 -9 4.2 ATTTTTGACATGTATCACCTCA
Position: -104
Score: 4.4
Sequence: TGTTTTGATCTGCCTCACGGTT
Position: -74
Score: 3.9
Sequence: ATATGTGAGCGACATTATGATT
Locus tag: Ssed_4115
Ssed_4115 -104 4.4 TGTTTTGATCTGCCTCACGGTT
-74 3.9 ATATGTGAGCGACATTATGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdrC
Ortholog function: fumarate reductase cytochrome b subunit
Shewanella oneidensis MR-1 SO0397 -79 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella oneidensis MR-1 SO0397 -144 4 TTTTGTGATCATCTTCTAAGAG
-79 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella putrefaciens CN-32 Sputcn32_3440 -67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella putrefaciens CN-32 Sputcn32_3440 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1 Sputw3181_0499 -67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1 Sputw3181_0499 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp ANA-3 Shewana3_0402 -77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp ANA-3 Shewana3_0402 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4 Shewmr4_0403 -77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4 Shewmr4_0403 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7 Shewmr7_3622 -76 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7 Shewmr7_3622 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-76 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella baltica OS155 Sbal_3936 -105 4.1 TCAATTGATCTGGCTCACGTTT
Shewanella baltica OS155 Sbal_3936 -145 4.3 TTTTGTGATCTTCTTCTAAGAG
-105 4.1 TCAATTGATCTGGCTCACGTTT
Shewanella amazonensis SB2B Sama_3221 -144 4.1 GTTTGTGATCCGCTTCCAATAA
Shewanella loihica PV-4 Shew_0333 -98 4.4 TGTTTTGATCTATCTCACGGTT
Shewanella loihica PV-4 Shew_0333 -98 4.4 TGTTTTGATCTATCTCACGGTT
Shewanella pealeana ATCC 700345 Spea_0393 -138 4.7 ATTTGTGATCTTGATCTAATAG
-106 4 AAGGGTGAGTTCCTTCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella pealeana ATCC 700345 Spea_0393 -94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_3898 -138 3.9 GTTTGTGATCTACGTCTAATAG
-106 4.2 TGTAGTGACACTGATCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_3898 -94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella piezotolerans WP3 swp_0429 -106 3.8 TAGGGTGAGCAAAGTCACGATT
-94 3.9 TTTGTTGATCTATCTCACTGTT
Shewanella piezotolerans WP3 swp_0429 -94 3.9 TTTGTTGATCTATCTCACTGTT
Shewanella sediminis HAW-EB3 Ssed_4115 -104 4.4 TGTTTTGATCTGCCTCACGGTT
-74 3.9 ATATGTGAGCGACATTATGATT
Shewanella sediminis HAW-EB3 Ssed_4115 -104 4.4 TGTTTTGATCTGCCTCACGGTT
-74 3.9 ATATGTGAGCGACATTATGATT
Shewanella woodyi ATCC 51908 Swoo_0508 -109 4.7 TGATTTGATCTGTCTCACAGTA
-79 4 ATTTGTGAGCGACATTATCTAA
Shewanella woodyi ATCC 51908 Swoo_0508 -109 4.7 TGATTTGATCTGTCTCACAGTA
-79 4 ATTTGTGAGCGACATTATCTAA
Position: -126
Score: 4.5
Sequence: GTTTGTGATCTGCTTCAAATAG
Locus tag: Ssed_4116
Ssed_4116 -126 4.5 GTTTGTGATCTGCTTCAAATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdC1
Ortholog function: Fumarate reductase cytochrome b subunit
Shewanella oneidensis MR-1 SO0396 -144 4 TTTTGTGATCATCTTCTAAGAG
-79 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella putrefaciens CN-32 Sputcn32_3441 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1 Sputw3181_0498 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp ANA-3 Shewana3_0401 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4 Shewmr4_0402 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7 Shewmr7_3623 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-76 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella baltica OS155 Sbal_3937 -145 4.3 TTTTGTGATCTTCTTCTAAGAG
-105 4.1 TCAATTGATCTGGCTCACGTTT
Shewanella frigidimarina NCIMB 400 Sfri_0456 -135 3.8 TTGTGTGACCCGCTTCTAACTC
-103 3.8 ATAGGTGAACATTATCACGGTT
Shewanella frigidimarina NCIMB 400 Sfri_0456 -135 3.8 TTGTGTGACCCGCTTCTAACTC
-103 3.8 ATAGGTGAACATTATCACGGTT
Shewanella amazonensis SB2B Sama_3222 -144 4.1 GTTTGTGATCCGCTTCCAATAA
Shewanella pealeana ATCC 700345 Spea_0392 -138 4.7 ATTTGTGATCTTGATCTAATAG
-106 4 AAGGGTGAGTTCCTTCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_3899 -138 3.9 GTTTGTGATCTACGTCTAATAG
-106 4.2 TGTAGTGACACTGATCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella piezotolerans WP3 swp_0428 -106 3.8 TAGGGTGAGCAAAGTCACGATT
-94 3.9 TTTGTTGATCTATCTCACTGTT
Shewanella sediminis HAW-EB3 Ssed_4116 -126 4.5 GTTTGTGATCTGCTTCAAATAG
Shewanella woodyi ATCC 51908 Swoo_0507 -138 4.8 GTTTGTGATGTGGTTCAAAAAA
Position: -53
Score: 5
Sequence: TAATGTGATTGGTATTACAATA
Locus tag: Ssed_4117
Ssed_4117 -53 5 TAATGTGATTGGTATTACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: prmA
Ortholog function: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Shewanella loihica PV-4 Shew_0331 -274 3.8 AAGCGTGAGACACCTCACCCTG
-242 4.1 ACATTTGACGTCGATCACAAAC
Shewanella pealeana ATCC 700345 Spea_0391 -283 4.3 TTTCGTGAAGGAACTCACCCTT
-251 4.1 CTATTAGATCAAGATCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_3900 -281 3.9 TTTCGTGATCAGTGTCACTACA
-249 3.7 CTATTAGACGTAGATCACAAAC
Shewanella piezotolerans WP3 swp_0427 -286 4.5 AATCGTGACTTTGCTCACCCTA
Shewanella sediminis HAW-EB3 Ssed_4117 -53 5 TAATGTGATTGGTATTACAATA
Shewanella woodyi ATCC 51908 Swoo_0506 -233 4.5 TTTTTTGAACCACATCACAAAC
Position: -90
Score: 5.2
Sequence: AAGTGTGATCTTGATCTCATTT
Locus tag: Ssed_4132
Ssed_4132 -90 5.2 AAGTGTGATCTTGATCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1 SO4312 -91 5 AAGTGTGATGGACCTCTCATTT
Shewanella putrefaciens CN-32 Sputcn32_3586 -91 5.4 AAATGTGATGCAGATCTCATTT
-51 3.8 AAGTGTTAACATAAGCACACTT
Shewanella sp W3-18-1 Sputw3181_3725 -91 5.4 AAATGTGATGCAGATCTCATTT
-51 3.8 AAGTGTTAACATAAGCACACTT
Shewanella sp ANA-3 Shewana3_0387 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella sp MR-4 Shewmr4_0389 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella sp MR-7 Shewmr7_3637 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_0441 -129 3.8 AAATGCTACGATGATCACCATT
-100 3.9 AAATGTGATCTTGATTGGCAAA
Shewanella amazonensis SB2B Sama_3253 -90 5.4 AAATGTGATCTCTATCGCAAAT
Shewanella loihica PV-4 Shew_0319 -88 5.1 AAGTGTGATCCAGCTCTCAAAT
Shewanella pealeana ATCC 700345 Spea_0374 -87 5.3 AAGTGTGATCTTGATCGCATTT
Shewanella halifaxensis HAW-EB4 Shal_3916 -88 5.3 AAGCGTGATGTTGATCACATTT
Shewanella piezotolerans WP3 swp_0403 -106 5.5 AAATGTGATCGGAGTCACATTT
Shewanella sediminis HAW-EB3 Ssed_4132 -90 5.2 AAGTGTGATCTTGATCTCATTT
Shewanella woodyi ATCC 51908 Swoo_0484 -98 5 AAGTGTGATCTTGGTCTCATTT
Position: -133
Score: 4.9
Sequence: AAATGAGATCAAGATCACACTT
Locus tag: Ssed_4133
Ssed_4133 -133 4.9 AAATGAGATCAAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemC
Ortholog function: Porphobilinogen deaminase (EC 2.5.1.61)
Shewanella oneidensis MR-1 SO4313 -172 3.9 GATTGTGCTCATGTTAACACTT
-132 4.5 AAATGAGAGGTCCATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3587 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp W3-18-1 Sputw3181_3726 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp ANA-3 Shewana3_0386 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-4 Shewmr4_0388 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-7 Shewmr7_3638 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella baltica OS155 Sbal_4000 -132 4.9 AAATGTGAAGTCCGTCACACTT
Shewanella denitrificans OS217 Sden_0388 -85 3.9 AAATCTGCTTTGCTTCAAACAT
Shewanella frigidimarina NCIMB 400 Sfri_0440 -167 4 AATGGTGATCATCGTAGCATTT
Shewanella amazonensis SB2B Sama_3254 -89 5.1 ATTTGCGATAGAGATCACATTT
Shewanella loihica PV-4 Shew_0318 -119 4.7 ATTTGAGAGCTGGATCACACTT
Shewanella pealeana ATCC 700345 Spea_0373 -133 5 AAATGCGATCAAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_3917 -133 5.1 AAATGTGATCAACATCACGCTT
Shewanella piezotolerans WP3 swp_0402 -40 4.3 AAATGTAATCCGTATCGCAACA
Shewanella sediminis HAW-EB3 Ssed_4133 -133 4.9 AAATGAGATCAAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_0483 -229 4.6 AAATGAGACCAAGATCACACTT
Position: 8
Score: 3.9
Sequence: AATTATGATCTATCTCGGGATT
Locus tag: Ssed_4136
Ssed_4136 8 3.9 AATTATGATCTATCTCGGGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemY
Ortholog function: HemY domain-containing protein
Shewanella oneidensis MR-1 SO4316 -172 3.9 GATTGTGCTCATGTTAACACTT
-132 4.5 AAATGAGAGGTCCATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3590 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp W3-18-1 Sputw3181_3729 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp ANA-3 Shewana3_0383 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-4 Shewmr4_0385 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-7 Shewmr7_3641 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella baltica OS155 Sbal_4003 -132 4.9 AAATGTGAAGTCCGTCACACTT
Shewanella denitrificans OS217 Sden_0385 -85 3.9 AAATCTGCTTTGCTTCAAACAT
Shewanella frigidimarina NCIMB 400 Sfri_0437 -167 4 AATGGTGATCATCGTAGCATTT
Shewanella amazonensis SB2B Sama_3257 -89 5.1 ATTTGCGATAGAGATCACATTT
Shewanella loihica PV-4 Shew_0315 -119 4.7 ATTTGAGAGCTGGATCACACTT
Shewanella pealeana ATCC 700345 Spea_0370 -133 5 AAATGCGATCAAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_3920 -133 5.1 AAATGTGATCAACATCACGCTT
Shewanella piezotolerans WP3 swp_0398 -40 4.3 AAATGTAATCCGTATCGCAACA
Shewanella sediminis HAW-EB3 Ssed_4136 -133 4.9 AAATGAGATCAAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_0480 -229 4.6 AAATGAGACCAAGATCACACTT
Position: -78
Score: 4
Sequence: TATAGTGATCTCAATCACTGCT
Locus tag: Ssed_4166
Ssed_4166 -78 4 TATAGTGATCTCAATCACTGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvC
Ortholog function: Ketol-acid reductoisomerase (EC 1.1.1.86)
Shewanella oneidensis MR-1 SO4349 -86 4 TATAGTGACTTCAATCACAACC
Shewanella putrefaciens CN-32 Sputcn32_3615 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp W3-18-1 Sputw3181_3755 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp ANA-3 Shewana3_0355 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp MR-4 Shewmr4_0361 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp MR-7 Shewmr7_3665 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella baltica OS155 Sbal_4032 -85 4.3 TATAGTGATTTCAATCACAACC
Shewanella frigidimarina NCIMB 400 Sfri_0421 -85 4.1 TATAGTGACTTCAATCACAACG
Shewanella amazonensis SB2B Sama_3282 -88 4.4 TATAGTGAGTTCAATCACAATC
Shewanella loihica PV-4 Shew_0288 -126 3.7 CAATGTGACGTTTCGAATATAT
-77 3.8 ATAGTTGATCTCATTCACAGCT
Shewanella piezotolerans WP3 swp_0358 -77 4.6 TATAGTGATCTCAATCACAGCT
Shewanella sediminis HAW-EB3 Ssed_4166 -78 4 TATAGTGATCTCAATCACTGCT
Shewanella woodyi ATCC 51908 Swoo_0441 -78 3.5 TATAGTGAATTCAATCACTGCT
Position: -95
Score: 4.2
Sequence: TTTTGTGGTGTACCTCAAGAAA
Locus tag: Ssed_4177
Ssed_4177 -95 4.2 TTTTGTGGTGTACCTCAAGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1415
Ortholog function: transcriptional regulator, TetR family
Shewanella sediminis HAW-EB3 Ssed_4177 -95 4.2 TTTTGTGGTGTACCTCAAGAAA
Position: -259
Score: 3.9
Sequence: ATTCGTGAAGCAGATCTCGAAG
Position: -136
Score: 4.1
Sequence: TTACATGAGGTAACTCACAAAG
Locus tag: Ssed_4183
Ssed_4183 -259 3.9 ATTCGTGAAGCAGATCTCGAAG
-136 4.1 TTACATGAGGTAACTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1415
Ortholog function: transcriptional regulator, TetR family
Shewanella oneidensis MR-1 SO1415 -135 3.8 GTATTTGAAGTAACTCACAAAG
-94 4 AGGTGTGACCTTTATCCCGATT
Shewanella sp MR-4 Shewmr4_0298 -241 3.8 ATTCGTGAGTTATCTCGTGAAT
-94 4 TGATGTGAGCTTAATCCCGATT
Shewanella loihica PV-4 Shew_0277 -137 4.4 TTGTTTGACGTAATTCACAAAG
Shewanella pealeana ATCC 700345 Spea_0326 -247 4.1 ATTCGTGAGTCAGCTCTCGAAT
-138 4.5 TTATATGACGTAATTCACAAAG
Shewanella halifaxensis HAW-EB4 Shal_3965 -247 4.2 ATTCGTGAGGCAGCTCTCGAAT
-138 4.3 TTGTATGACGTAACTCACAAAG
Shewanella sediminis HAW-EB3 Ssed_4183 -259 3.9 ATTCGTGAAGCAGATCTCGAAG
-136 4.1 TTACATGAGGTAACTCACAAAG
Position: -239
Score: 4.1
Sequence: CTTTGTGAGTTACCTCATGTAA
Position: -116
Score: 4
Sequence: CTTCGAGATCTGCTTCACGAAT
Locus tag: Ssed_4184
Ssed_4184 -239 4.1 CTTTGTGAGTTACCTCATGTAA
-116 4 CTTCGAGATCTGCTTCACGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1414
Ortholog function: flavocytochrome c flavin subunit
Shewanella oneidensis MR-1 SO1414 -220 4.3 CTTTGTGAGTTACTTCAAATAC
Shewanella sp MR-4 Shewmr4_0299 -263 4 AATCGGGATTAAGCTCACATCA
Shewanella loihica PV-4 Shew_0276 -216 4.2 CTTTGTGAATTACGTCAAACAA
Shewanella pealeana ATCC 700345 Spea_0325 -228 4.3 CTTTGTGAATTACGTCATATAA
-181 4.1 CAGATTGATTCCTTTCACATTT
-78 4.4 TGGCGTGACTTAGTTCACCTTT
Shewanella halifaxensis HAW-EB4 Shal_3966 -269 4 AATCGGGATTCACTTCACGCTA
-228 4.2 CTTTGTGAGTTACGTCATACAA
-78 4.4 TGGCGTGACTTAGTTCACCTTT
Shewanella sediminis HAW-EB3 Ssed_4184 -280 3.8 AATCGGGATTAGCTTCACGCAA
-239 4.1 CTTTGTGAGTTACCTCATGTAA
-116 4 CTTCGAGATCTGCTTCACGAAT
Position: -113
Score: 4.2
Sequence: GTGCGTGATCCAATTCACCTTT
Locus tag: Ssed_4188
Ssed_4188 -113 4.2 GTGCGTGATCCAATTCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1410
Ortholog function: conserved domain protein
Shewanella oneidensis MR-1 SO1410 -122 4.5 TGGCGTGATCCAATTCACCTTT
-82 4.1 TATTGTTAGTCACGTAACAAAA
Shewanella sp MR-4 Shewmr4_0303 -108 4.4 TGCCGTGATCCAATTCACCTTT
-68 4.1 TATTGTTAGTCACGTAACAATA
Shewanella loihica PV-4 Shew_0272 -151 3.9 ATTCGCGAGCCAAGTCACGAAT
-110 4.6 TGGCGTGATCCATTTCACCTTT
Shewanella pealeana ATCC 700345 Spea_0321 -157 4.1 ATTCGCGACCGAGCTCACGAAT
-116 4.1 CTGCGTGATCCATTTCAACTTT
Shewanella halifaxensis HAW-EB4 Shal_3970 -156 4.1 ATTCGCGACTTGGCTCACGAAT
-115 4.1 CTGCGTGATCCAATTCAACTTT
Shewanella sediminis HAW-EB3 Ssed_4188 -154 3.9 ATTCGCGAGCTCTGTCACGAAT
-113 4.2 GTGCGTGATCCAATTCACCTTT
Position: -187
Score: 3.9
Sequence: TTTTGTGCACATCTTCATACTT
Locus tag: Ssed_4199
Ssed_4199 -187 3.9 TTTTGTGCACATCTTCATACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbA
Ortholog function: nitrosative stress induced protein
Shewanella oneidensis MR-1 SO0324 -97 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella putrefaciens CN-32 Sputcn32_3663 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella sp W3-18-1 Sputw3181_3804 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella sp ANA-3 Shewana3_3845 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-4 Shewmr4_3649 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-7 Shewmr7_0295 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella baltica OS155 Sbal_4067 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0404 -142 4 TTTTGCGATCCCAACCTCAAAA
Shewanella amazonensis SB2B Sama_3326 -94 3.6 TTTTGTGCGCATCTTCATGCTT
Shewanella loihica PV-4 Shew_0259 -96 4.1 TTTTGTGCGCATCTTCATAATT
Shewanella pealeana ATCC 700345 Spea_0303 -96 3.9 TTTTGTGCACATCTTCAAAGTT
Shewanella halifaxensis HAW-EB4 Shal_3986 -96 4 TTTTGTGCACATCTTCAAACTT
Shewanella piezotolerans WP3 swp_2171 -96 4 TTTTGTGCGCACCTTCAAACTT
Shewanella sediminis HAW-EB3 Ssed_4199 -187 3.9 TTTTGTGCACATCTTCATACTT
Shewanella woodyi ATCC 51908 Swoo_0395 -82 3.4 TTCTGTGCGCACCTTCATAGAT
Position: -111
Score: 3.9
Sequence: CCGAGTGATGTAGAGCACATAA
Locus tag: Ssed_4278
Ssed_4278 -111 3.9 CCGAGTGATGTAGAGCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppc
Ortholog function: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Shewanella sp ANA-3 Shewana3_3906 -233 3.7 AATATTGCGTTAGCTCGCATTT
-189 3.7 TATCGCGATTAGTTGCATATAA
Shewanella sp MR-4 Shewmr4_3710 -228 3.7 AATATTGCGTTAGCTCGCATTT
-184 4.3 TATCGTGATTAGTTGCATATAA
Shewanella sp MR-7 Shewmr7_0235 -228 3.7 AATATTGCGTTAGCTCGCATTT
-184 4.3 TATCGTGATTAGTTGCATATAA
Shewanella loihica PV-4 Shew_0200 -107 4.3 CAAGGTGATATAGAACACATAA
Shewanella halifaxensis HAW-EB4 Shal_4095 -106 5 AAAAGTGATATAGAGCACATTA
Shewanella piezotolerans WP3 swp_2053 -106 4.4 TAAAGTGAGGTAGAGCACATTC
Shewanella sediminis HAW-EB3 Ssed_4278 -111 3.9 CCGAGTGATGTAGAGCACATAA
Shewanella woodyi ATCC 51908 Swoo_0327 -111 4.7 AGAAGTGATGTAGAACACATAA
Position: -145
Score: 4.4
Sequence: AGCTTTGATTGAAATCACAAAA
Locus tag: Ssed_4286
Ssed_4286 -145 4.4 AGCTTTGATTGAAATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scyA
Ortholog function: cytochrome c-type protein
Shewanella oneidensis MR-1 SO0264 -234 4 CAATTTGATATGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3726 -229 4 CAATTTGATGTGGTTCCAATAA
-129 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella sp W3-18-1 Sputw3181_0189 -229 4 CAATTTGATGTGGTTCCAATAA
-129 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella sp ANA-3 Shewana3_0232 -234 4 CAATTTGATGTGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-4 Shewmr4_0232 -234 4 CAATTTGATGTGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-7 Shewmr7_0227 -234 4 CAATTTGATGTGGTTCCAATAA
-125 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella baltica OS155 Sbal_0229 -228 3.9 CAATATGATGTGGTTCCAATAA
-128 4.5 TGTTGAGATTCTAATCACAAAA
Shewanella denitrificans OS217 Sden_3568 -131 3.8 AGCTGGGAGGCTTATCACAAAA
-109 4.1 AGGTGTGATTTTATTAACTTTA
Shewanella frigidimarina NCIMB 400 Sfri_0180 -233 3.9 CAATTTGATATGGTTCCAAAAT
-133 4.1 AGCTGAGATTGTTATCACAAAA
Shewanella amazonensis SB2B Sama_0246 -225 4 CAATTTGATGCAGTTCCAATAA
Shewanella loihica PV-4 Shew_0191 -242 3.8 CAATTTGATATGCTTCCAAAAA
-131 4.8 AATTCTGATATTAATCACAAAA
Shewanella pealeana ATCC 700345 Spea_0216 -230 4.4 CAATTTGATGTAGTTCGAATAT
-130 4 TGGCGAGATTAATATCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_4103 -230 4.4 CAATTTGATGTAGTTCGAATAT
Shewanella piezotolerans WP3 swp_2044 -231 4.4 CAATTTGATGTAGTTCGAATAT
-131 4.8 TAACGCGATTTAAATCACAAAT
Shewanella sediminis HAW-EB3 Ssed_4286 -145 4.4 AGCTTTGATTGAAATCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4658 -256 3.8 CAATTTGATATGCTTCCAAAAA
-144 3.9 TACTTTGATTAAAGTCATAAAA
Position: -223
Score: 4.5
Sequence: TTTTGTGATTTCAATCAAAGCT
Locus tag: Ssed_4287
Ssed_4287 -223 4.5 TTTTGTGATTTCAATCAAAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Shewanella oneidensis MR-1 SO0263 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella putrefaciens CN-32 Sputcn32_3727 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp W3-18-1 Sputw3181_0188 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp ANA-3 Shewana3_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-4 Shewmr4_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-7 Shewmr7_0226 -222 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella baltica OS155 Sbal_0228 -212 4.4 TTTTGTGATTAGAATCTCAACA
Shewanella denitrificans OS217 Sden_3569 -186 4 TTTTGTGATAAGCCTCCCAGCT
Shewanella frigidimarina NCIMB 400 Sfri_0179 -213 4.2 TTTTGTGATAACAATCTCAGCT
Shewanella amazonensis SB2B Sama_0245 -207 3.8 TTTTGTGAGTTCCCTCCCAGCT
Shewanella loihica PV-4 Shew_0190 -223 4.8 TTTTGTGATTAATATCAGAATT
Shewanella pealeana ATCC 700345 Spea_0215 -212 4.1 TTTTGTGATATTAATCTCGCCA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella halifaxensis HAW-EB4 Shal_4104 -212 3.9 TTTTGTGACATAAACCGTACTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella piezotolerans WP3 swp_2043 -212 5 ATTTGTGATTTAAATCGCGTTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella sediminis HAW-EB3 Ssed_4287 -223 4.5 TTTTGTGATTTCAATCAAAGCT
Shewanella woodyi ATCC 51908 Swoo_4659 -224 4.2 TTTTATGACTTTAATCAAAGTA
Position: -142
Score: 4.1
Sequence: AAACACGATCTTCCTCACACAT
Locus tag: Ssed_4362
Ssed_4362 -142 4.1 AAACACGATCTTCCTCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shewanella oneidensis MR-1 SO0162 -150 3.8 CTCAATGATCCAGCTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3571 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3708 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp ANA-3 Shewana3_0147 -151 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-4 Shewmr4_0152 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-7 Shewmr7_0147 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella amazonensis SB2B Sama_0165 -145 4.1 TTTTCAGATCCGGCTCACACAT
Shewanella loihica PV-4 Shew_3623 -128 4.6 TTTCGCGATCTTCCTCACACAT
Shewanella pealeana ATCC 700345 Spea_0140 -112 4.9 TTTTTTGATCTAGTACACATAT
Shewanella halifaxensis HAW-EB4 Shal_4178 -112 4.8 TTTTTTGATCTTGCCCACATAT
Shewanella piezotolerans WP3 swp_0182 -113 4.9 TTTTTTGATCTAGTCCACATAT
Shewanella sediminis HAW-EB3 Ssed_4362 -142 4.1 AAACACGATCTTCCTCACACAT
Shewanella woodyi ATCC 51908 Swoo_4740 -100 3.8 AATCGTGACATAGCGCAAAGAC
Position: -198
Score: 3.7
Sequence: ATCATTGATAAATATAACAAAA
Position: -139
Score: 3.7
Sequence: AACCGTGACCTAGATTAGACTT
Locus tag: Ssed_4373
Ssed_4373 -198 3.7 ATCATTGATAAATATAACAAAA
-139 3.7 AACCGTGACCTAGATTAGACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0141
Ortholog function: sensory box/GGDEF family protein
Shewanella oneidensis MR-1 SO0141 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella putrefaciens CN-32 Sputcn32_0133 -174 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella sp W3-18-1 Sputw3181_3939 -174 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella sp ANA-3 Shewana3_0133 -163 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-4 Shewmr4_0134 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-7 Shewmr7_0128 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella baltica OS155 Sbal_4220 -160 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella baltica OS155 Sbal_4221 -160 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella amazonensis SB2B Sama_0142 -137 4.6 TTTTGTGATGTGGATTAGAAAT
Shewanella loihica PV-4 Shew_0041 -55 4 TTTCGTGACCTAGATTAGACTT
Shewanella piezotolerans WP3 swp_0168 -156 4 ATTCGTGACCTAGATTAGACTT
Shewanella sediminis HAW-EB3 Ssed_4373 -198 3.7 ATCATTGATAAATATAACAAAA
Shewanella woodyi ATCC 51908 Swoo_4765 -240 4 AATCGTGACTTAGATTAGACTT
Position: -221
Score: 4.4
Sequence: GTATGTGAGGGGTGTCACAAAA
Locus tag: Ssed_4402
Ssed_4402 -221 4.4 GTATGTGAGGGGTGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: molybdenum cofactor biosynthesis protein MoaA
Shewanella oneidensis MR-1 SO4452 -220 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella putrefaciens CN-32 Sputcn32_0389 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp W3-18-1 Sputw3181_0243 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp ANA-3 Shewana3_0274 -187 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella sp MR-4 Shewmr4_0273 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella sp MR-7 Shewmr7_3748 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella baltica OS155 Sbal_0284 -187 4 TTAGGTGAGGACTGTCACAGAT
Shewanella denitrificans OS217 Sden_0101 -186 4.3 TGAGGTGAGCTGTGTCACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0082 -186 4.5 TAGCGTGAGTCGAGTCACAAAT
Shewanella amazonensis SB2B Sama_3524 -180 4 CTGAGTGAGCGGCGTCACAATT
Shewanella loihica PV-4 Shew_0087 -189 4.4 CTTCGTGAGCGGTGTCACATTA
Shewanella pealeana ATCC 700345 Spea_4120 -222 4.1 TGCCGTGATAACTGTCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0122 -222 4.3 TGGCGTGATAACTGTCACAAAA
Shewanella piezotolerans WP3 swp_5009 -222 4.3 TGAGGTGATTAGTGTCACAAAA
Shewanella sediminis HAW-EB3 Ssed_4402 -221 4.4 GTATGTGAGGGGTGTCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4793 -222 4.3 GAATGTGAGTGTCGTCACAAAA
Position: -150
Score: 4.8
Sequence: TTTTGTGACACCCCTCACATAC
Locus tag: Ssed_4403
Ssed_4403 -150 4.8 TTTTGTGACACCCCTCACATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Shewanella oneidensis MR-1 SO4453 -171 4.3 ATCTGTGACAGTGCTCACCCAA
Shewanella putrefaciens CN-32 Sputcn32_0388 -171 4.2 ATCTGTGACAGTCCTCACCCAA
Shewanella sp W3-18-1 Sputw3181_0242 -171 4.2 ATCTGTGACAGTCCTCACCCAA
Shewanella sp ANA-3 Shewana3_0273 -175 4.3 ATCTGTGACAGTGCTCACCCAA
Shewanella sp MR-4 Shewmr4_0272 -175 4.3 AACTGTGACAGCGCTCACCCAA
Shewanella sp MR-7 Shewmr7_3749 -175 4.3 AACTGTGACAGCGCTCACCCAA
Shewanella baltica OS155 Sbal_0283 -170 4.4 ATCTGTGACAGTCCTCACCTAA
Shewanella denitrificans OS217 Sden_0100 -130 4.6 TTTTGTGACACAGCTCACCTCA
Shewanella frigidimarina NCIMB 400 Sfri_0081 -159 4.7 ATTTGTGACTCGACTCACGCTA
Shewanella amazonensis SB2B Sama_3523 -157 4.3 AATTGTGACGCCGCTCACTCAG
Shewanella loihica PV-4 Shew_0086 -148 4.5 TAATGTGACACCGCTCACGAAG
Shewanella pealeana ATCC 700345 Spea_4121 -181 4.1 TTTTGTGACAGTTATCACGGCA
Shewanella halifaxensis HAW-EB4 Shal_0121 -180 4.2 TTTTGTGACAGTTATCACGCCA
Shewanella piezotolerans WP3 swp_5010 -176 4.4 TTTTGTGACACTAATCACCTCA
Shewanella sediminis HAW-EB3 Ssed_4403 -150 4.8 TTTTGTGACACCCCTCACATAC
Shewanella woodyi ATCC 51908 Swoo_4794 -135 4.7 TTTTGTGACGACACTCACATTC
Position: -203
Score: 4
Sequence: AAACATGACTTGCTTAACAAAA
Position: -41
Score: 3.8
Sequence: TTTTCTGACGCTACTCATAGAT
Locus tag: Ssed_4414
Ssed_4414 -203 4 AAACATGACTTGCTTAACAAAA
-41 3.8 TTTTCTGACGCTACTCATAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4520
Ortholog function: Oxygen-independent coproporphyrinogen III oxidase, putative
Shewanella oneidensis MR-1 SO4520 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3506 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_0400 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp ANA-3 Shewana3_3926 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp MR-4 Shewmr4_3730 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp MR-7 Shewmr7_3801 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella baltica OS155 Sbal_0219 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0076 -182 4.4 AAACATGATCTGCTTAACAAAT
Shewanella amazonensis SB2B Sama_3604 -171 3.9 AAATATGCGCTGCTTAACAAAA
Shewanella loihica PV-4 Shew_0073 -182 4.1 AAACATGACATGCTTAACAATT
Shewanella pealeana ATCC 700345 Spea_4126 -164 4.4 AAGTATGATCCGCTTAACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0116 -164 4.2 AAGTATGACCCGCTTAACAAAA
Shewanella piezotolerans WP3 swp_5018 -166 4.2 AAGTATGACTTACTTAACAAAA
Shewanella sediminis HAW-EB3 Ssed_4414 -203 4 AAACATGACTTGCTTAACAAAA
Shewanella woodyi ATCC 51908 Swoo_4806 -184 4 AAACATGACTCGCTTAACAAAA
Position: -217
Score: 4.1
Sequence: ATGCGTGATCTCTCTCATTTAA
Position: -123
Score: 3.9
Sequence: ATTGATGATCCAGCTCAAGTTA
Locus tag: Ssed_4426
Ssed_4426 -217 4.1 ATGCGTGATCTCTCTCATTTAA
-123 3.9 ATTGATGATCCAGCTCAAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4504
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO4504 -130 4 TTTGATGATCCACTTCAAACTA
Shewanella putrefaciens CN-32 Sputcn32_0342 -140 4.1 TTTGATGATCTACTTCAAACTT
Shewanella sp W3-18-1 Sputw3181_3866 -140 4.1 TTTGATGATCTACTTCAAACTT
Shewanella sp ANA-3 Shewana3_3911 -225 3.8 ATGCGTGATCCGTCGCAATTAT
-131 3.9 TTTGATGATCCACCTCAAACAA
Shewanella sp MR-4 Shewmr4_3715 -225 3.8 ATGCGTGATCCGTCGCAATTAT
-131 3.9 TTTGATGATCCACCTCAAACAA
Shewanella sp MR-7 Shewmr7_3786 -225 3.8 ATGCGTGATCCGTCGCAATTAT
-131 3.9 TTTGATGATCCACCTCAAACAA
Shewanella baltica OS155 Sbal_4131 -136 4.2 TTTGATGATCTAGTTCAAACTA
Shewanella frigidimarina NCIMB 400 Sfri_0052 -125 4.2 TTTCGGGATCTAGTTCAAAGTT
Shewanella amazonensis SB2B Sama_3618 -113 4 TTTGATGATCCACTTCAAACTT
Shewanella loihica PV-4 Shew_0054 -127 4.1 TTTGATGATCCAGTTCAAACTA
Shewanella pealeana ATCC 700345 Spea_4142 -123 4.2 ATAGTTGATCTAGTTCAAACTA
Shewanella halifaxensis HAW-EB4 Shal_0100 -124 4.2 ATAGTTGATCTAGTTCAAACTA
Shewanella piezotolerans WP3 swp_5034 -148 4 TTATGAGATTTCAATTACCTTT
-87 3.8 AAGTTAGCTGCAGATCACACTT
Shewanella sediminis HAW-EB3 Ssed_4426 -217 4.1 ATGCGTGATCTCTCTCATTTAA
-123 3.9 ATTGATGATCCAGCTCAAGTTA
Shewanella woodyi ATCC 51908 Swoo_4818 -148 4.2 TTTGATGATCTAGCTCAAAAAA
Position: -153
Score: 3.9
Sequence: TAACTTGAGCTGGATCATCAAT
Position: -59
Score: 3.8
Sequence: TTAAATGAGAGAGATCACGCAT
Locus tag: Ssed_4427
Ssed_4427 -153 3.9 TAACTTGAGCTGGATCATCAAT
-59 3.8 TTAAATGAGAGAGATCACGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4503
Ortholog function: formate dehydrogenase chain D (EC 1.2.1.2)
Shewanella putrefaciens CN-32 Sputcn32_0343 -187 4 AAGTTTGAAGTAGATCATCAAA
-91 4.1 AATTGCGATAGATCACGCATTT
Shewanella sp W3-18-1 Sputw3181_3865 -131 4 AAGTTTGAAGTAGATCATCAAA
-35 4.1 AATTGCGATAGATCACGCATTT
Shewanella sp ANA-3 Shewana3_3910 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella sp MR-4 Shewmr4_3714 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella sp MR-7 Shewmr7_3785 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella baltica OS155 Sbal_4130 -187 4 TAGTTTGAACTAGATCATCAAA
Shewanella frigidimarina NCIMB 400 Sfri_0051 -139 3.7 AGATTTGCGCCAGATCACGCTT
Shewanella amazonensis SB2B Sama_3619 -186 3.9 AAGTTTGAAGTGGATCATCAAA
Shewanella loihica PV-4 Shew_0053 -190 4 TAGTTTGAACTGGATCATCAAA
Shewanella pealeana ATCC 700345 Spea_4143 -183 4.2 TAGTTTGAACTAGATCAACTAT
-87 3.9 AAGTGTGATCGACCACTAACTT
-20 3.9 TTGCGTGACAAGGATAAAAAAT
Shewanella halifaxensis HAW-EB4 Shal_0099 -181 4.2 TAGTTTGAACTAGATCAACTAT
-85 4.5 AAATGTGATCTACTACTAATTT
Shewanella piezotolerans WP3 swp_5036 -86 4.2 AAGTGTGATCTGCAGCTAACTT
-25 4 AAAGGTAATTGAAATCTCATAA
Shewanella sediminis HAW-EB3 Ssed_4427 -153 3.9 TAACTTGAGCTGGATCATCAAT
-59 3.8 TTAAATGAGAGAGATCACGCAT
Shewanella woodyi ATCC 51908 Swoo_4819 -163 4.3 TTTTTTGAGCTAGATCATCAAA
Position: -150
Score: 4.1
Sequence: AGTTGTGATCCAACTTGTATTT
Locus tag: Ssed_4448
Ssed_4448 -150 4.1 AGTTGTGATCCAACTTGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutC
Ortholog function: histidine utilization repressor
Shewanella oneidensis MR-1 SO0096 -151 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella putrefaciens CN-32 Sputcn32_0078 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp W3-18-1 Sputw3181_3999 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp ANA-3 Shewana3_0099 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella sp MR-4 Shewmr4_0098 -142 4.1 TTATGTGAGCCAGCTTGTATTT
Shewanella sp MR-7 Shewmr7_0093 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella baltica OS155 Sbal_4253 -177 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella loihica PV-4 Shew_3758 -138 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella pealeana ATCC 700345 Spea_4170 -106 3.8 ATTTGTGAGCTAGCTTGTGTTT
Shewanella halifaxensis HAW-EB4 Shal_0072 -106 3.9 ATTTGTGAGCCCGCTTGTATTT
Shewanella piezotolerans WP3 swp_0132 -177 4.2 ATTTGTGAGCTAGCTTGTATTT
Shewanella sediminis HAW-EB3 Ssed_4448 -150 4.1 AGTTGTGATCCAACTTGTATTT
Shewanella woodyi ATCC 51908 Swoo_4839 -201 4.1 AAGTGTGATCCAACTTGTATTT
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