Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing udp gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -92
Score: 4.68199
Sequence: ATTCGTGATCCAGTTAACCTTA
Locus tag: Sama_0412
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -92 4.7 ATTCGTGATCCAGTTAACCTTA Sama_0412
Shewanella baltica OS155
Position: -229
Score: 3.82686
Sequence: GATTAGGATCTGGTTCACACTT
Position: -92
Score: 4.12525
Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: Sbal_3852
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -229 3.8 GATTAGGATCTGGTTCACACTT Sbal_3852
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella denitrificans OS217
Position: -92
Score: 4.39866
Sequence: AACTGTGATGAAGTTAACCAAA
Locus tag: Sden_3074
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -92 4.4 AACTGTGATGAAGTTAACCAAA Sden_3074
Shewanella frigidimarina NCIMB 400
Position: -244
Score: 4.69301
Sequence: TAACTTGATGTAAATCACGTTA
Position: -92
Score: 4.83478
Sequence: ATATGTGATCAAGTTAACCTTA
Locus tag: Sfri_3403
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -244 4.7 TAACTTGATGTAAATCACGTTA Sfri_3403
-92 4.8 ATATGTGATCAAGTTAACCTTA
Shewanella halifaxensis HAW-EB4
Position: -92
Score: 4.59757
Sequence: AAGTGTGATCAGTTTAACCTTT
Locus tag: Shal_0535
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -92 4.6 AAGTGTGATCAGTTTAACCTTT Shal_0535
Shewanella loihica PV-4
Position: -92
Score: 4.6412
Sequence: AAGTGTGATCAGGTTAACCTTA
Locus tag: Shew_3390
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -92 4.6 AAGTGTGATCAGGTTAACCTTA Shew_3390
Shewanella oneidensis MR-1
Position: -92
Score: 4.12525
Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: SO4133
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -92 4.1 TTCTGTGATCAAGTTAACCTTC SO4133
Shewanella pealeana ATCC 700345
Position: -92
Score: 4.67325
Sequence: AAGTGTGATCGGCTTAACCTTT
Locus tag: Spea_0460
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -92 4.7 AAGTGTGATCGGCTTAACCTTT Spea_0460
Shewanella piezotolerans WP3
Position: -310
Score: 4.69492
Sequence: ATTTGTGAGTTAGATCATGTTT
Position: -92
Score: 4.6412
Sequence: AAGTGTGATCAGGTTAACCTTA
Locus tag: swp_4702
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -310 4.7 ATTTGTGAGTTAGATCATGTTT swp_4702
-92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella putrefaciens CN-32
Position: -230
Score: 4.37877
Sequence: AAGTTAGATCTGGTTCACACTT
Position: -92
Score: 4.12525
Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: Sputcn32_0543
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -230 4.4 AAGTTAGATCTGGTTCACACTT Sputcn32_0543
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sediminis HAW-EB3
Position: -92
Score: 4.74986
Sequence: AAGTGTGATCGAGCTAACCTTT
Locus tag: Ssed_0461
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -92 4.7 AAGTGTGATCGAGCTAACCTTT Ssed_0461
Shewanella sp ANA-3
Position: -92
Score: 4.12525
Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: Shewana3_3680
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -92 4.1 TTCTGTGATCAAGTTAACCTTC Shewana3_3680
Shewanella sp MR-4
Position: -92
Score: 4.12525
Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: Shewmr4_3505
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -92 4.1 TTCTGTGATCAAGTTAACCTTC Shewmr4_3505
Shewanella sp MR-7
Position: -92
Score: 4.12525
Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: Shewmr7_0447
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -92 4.1 TTCTGTGATCAAGTTAACCTTC Shewmr7_0447
Shewanella sp W3-18-1
Position: -230
Score: 4.37877
Sequence: AAGTTAGATCTGGTTCACACTT
Position: -92
Score: 4.12525
Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: Sputw3181_3629
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -230 4.4 AAGTTAGATCTGGTTCACACTT Sputw3181_3629
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella woodyi ATCC 51908
Position: -272
Score: 4.87907
Sequence: AAATGTGATGTGGGTCAACAAA
Position: -92
Score: 4.6795
Sequence: AAGTGTGATCAAGTTAACCTTA
Locus tag: Swoo_4509
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp -272 4.9 AAATGTGATGTGGGTCAACAAA Swoo_4509
-92 4.7 AAGTGTGATCAAGTTAACCTTA
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