Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing yfiA-2 gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -78
Score: 4.31728
Sequence: AAACGTGATTTTACTCACGACT
Locus tag: Sama_0899
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -78 4.3 AAACGTGATTTTACTCACGACT Sama_0899
Shewanella baltica OS155
Position: -77
Score: 5.17724
Sequence: AAATGTGATCTAGATCTCGTTT
Locus tag: Sbal_1221
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -77 5.2 AAATGTGATCTAGATCTCGTTT Sbal_1221
Shewanella denitrificans OS217
Position: -77
Score: 4.75052
Sequence: AAGTGTGACTTTGATCACGCTT
Position: -38
Score: 4.14028
Sequence: TAATCTGAAGTTAAGCACATAA
Locus tag: Sden_2746
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -77 4.8 AAGTGTGACTTTGATCACGCTT Sden_2746
-38 4.1 TAATCTGAAGTTAAGCACATAA
Shewanella frigidimarina NCIMB 400
Position: -77
Score: 5.02355
Sequence: AAGTGTGATGCAGATCACTATT
Locus tag: Sfri_2912
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -77 5 AAGTGTGATGCAGATCACTATT Sfri_2912
Shewanella halifaxensis HAW-EB4
Position: -83
Score: 4.63076
Sequence: AAACATGACCTAGATCACACTA
Position: -58
Score: 3.78531
Sequence: TAATGTGATTGGACTATTGTAA
Locus tag: Shal_4284
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -83 4.6 AAACATGACCTAGATCACACTA Shal_4284
-58 3.8 TAATGTGATTGGACTATTGTAA
Shewanella loihica PV-4
Position: -76
Score: 4.56203
Sequence: AAAGTTGATCTAGATCACGTTT
Locus tag: Shew_1073
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -76 4.6 AAAGTTGATCTAGATCACGTTT Shew_1073
Shewanella oneidensis MR-1
Position: -78
Score: 4.65624
Sequence: AAGTGTGATTTAACTCTCGTTT
Locus tag: SO3422
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -78 4.7 AAGTGTGATTTAACTCTCGTTT SO3422
Shewanella pealeana ATCC 700345
Position: -76
Score: 4.6428
Sequence: AAACGTGATTTAGATCACGACT
Locus tag: Spea_1060
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -76 4.6 AAACGTGATTTAGATCACGACT Spea_1060
Shewanella piezotolerans WP3
Position: -76
Score: 4.6428
Sequence: AAACGTGATTTAGATCACGACT
Locus tag: swp_3757
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -76 4.6 AAACGTGATTTAGATCACGACT swp_3757
Shewanella putrefaciens CN-32
Position: -77
Score: 5.05406
Sequence: TTTTGTGATTTAGATCTCGTTT
Locus tag: Sputcn32_2740
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -77 5.1 TTTTGTGATTTAGATCTCGTTT Sputcn32_2740
Shewanella sediminis HAW-EB3
Position: -222
Score: 3.83618
Sequence: TTTTGAGAGGCAAATAAAAAAA
Position: -76
Score: 4.6428
Sequence: AAACGTGATTTAGATCACGACT
Locus tag: Ssed_1169
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -222 3.8 TTTTGAGAGGCAAATAAAAAAA Ssed_1169
-76 4.6 AAACGTGATTTAGATCACGACT
Shewanella sp ANA-3
Position: -78
Score: 5.07423
Sequence: AAATGTGATTTAGATCTCGTTT
Locus tag: Shewana3_1133
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -78 5.1 AAATGTGATTTAGATCTCGTTT Shewana3_1133
Shewanella sp MR-4
Position: -78
Score: 5.07423
Sequence: AAATGTGATTTAGATCTCGTTT
Locus tag: Shewmr4_1132
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -78 5.1 AAATGTGATTTAGATCTCGTTT Shewmr4_1132
Shewanella sp MR-7
Position: -78
Score: 5.07423
Sequence: AAATGTGATTTAGATCTCGTTT
Locus tag: Shewmr7_1203
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -78 5.1 AAATGTGATTTAGATCTCGTTT Shewmr7_1203
Shewanella sp W3-18-1
Position: -77
Score: 5.05406
Sequence: TTTTGTGATTTAGATCTCGTTT
Locus tag: Sputw3181_1272
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -77 5.1 TTTTGTGATTTAGATCTCGTTT Sputw3181_1272
Shewanella woodyi ATCC 51908
Position: -76
Score: 4.50549
Sequence: AAACGTGATCAAGATCACGACT
Locus tag: Swoo_1264
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2 -76 4.5 AAACGTGATCAAGATCACGACT Swoo_1264
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