Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing deoB gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -135
Score: 3.9367
Sequence: ATTTGTGATCCGCGTCGAAACG
Locus tag: Sama_0974
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Sama_0975
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Sama_0976
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -135 3.9 ATTTGTGATCCGCGTCGAAACG Sama_0974
Shewanella baltica OS155
Position: -136
Score: 3.72137
Sequence: AAGTGTGACCTAAATCTATTTG
Locus tag: Sbal_3226
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Sbal_3225
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Sbal_3224
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -136 3.7 AAGTGTGACCTAAATCTATTTG Sbal_3226
Shewanella halifaxensis HAW-EB4
Position: -138
Score: 4.84035
Sequence: AAGTGTGATCTAAATCTAATTA
Locus tag: Shal_3135
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shal_3134
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Shal_3133
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -138 4.8 AAGTGTGATCTAAATCTAATTA Shal_3135
Shewanella loihica PV-4
Position: -133
Score: 3.97801
Sequence: AAGTGTGATCTAAATCTATTTG
Locus tag: Shew_2814
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shew_2813
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Shew_2812
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -133 4 AAGTGTGATCTAAATCTATTTG Shew_2814
Shewanella oneidensis MR-1
Position: -135
Score: 3.9166
Sequence: AAGTGTGACCTAAATCTAGTTG
Locus tag: SO1218
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: SO1219
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: SO1221
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -135 3.9 AAGTGTGACCTAAATCTAGTTG SO1218
Shewanella pealeana ATCC 700345
Position: -138
Score: 4.84035
Sequence: AAGTGTGATCTAAATCTAATTA
Locus tag: Spea_3047
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Spea_3046
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Spea_3045
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -138 4.8 AAGTGTGATCTAAATCTAATTA Spea_3047
Shewanella piezotolerans WP3
Position: -139
Score: 4.84035
Sequence: AAGTGTGATCTAAATCTAATTA
Locus tag: swp_1230
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: swp_1231
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: swp_1232
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -139 4.8 AAGTGTGATCTAAATCTAATTA swp_1230
Shewanella putrefaciens CN-32
Position: -136
Score: 3.72137
Sequence: AAGTGTGACCTAAATCTATTTG
Locus tag: Sputcn32_2821
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Sputcn32_2820
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Sputcn32_2819
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -136 3.7 AAGTGTGACCTAAATCTATTTG Sputcn32_2821
Shewanella sediminis HAW-EB3
Position: -134
Score: 3.97801
Sequence: AAGTGTGATCTAAATCTATTTG
Locus tag: Ssed_3377
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Ssed_3376
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Ssed_3375
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -134 4 AAGTGTGATCTAAATCTATTTG Ssed_3377
Shewanella sp ANA-3
Position: -135
Score: 3.9166
Sequence: AAGTGTGACCTAAATCTAGTTG
Locus tag: Shewana3_1042
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shewana3_1043
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Shewana3_1044
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -135 3.9 AAGTGTGACCTAAATCTAGTTG Shewana3_1042
Shewanella sp MR-4
Position: -135
Score: 3.9166
Sequence: AAGTGTGACCTAAATCTAGTTG
Locus tag: Shewmr4_1038
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shewmr4_1039
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Shewmr4_1040
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -135 3.9 AAGTGTGACCTAAATCTAGTTG Shewmr4_1038
Shewanella sp MR-7
Position: -135
Score: 3.9166
Sequence: AAGTGTGACCTAAATCTAGTTG
Locus tag: Shewmr7_1103
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shewmr7_1104
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Shewmr7_1105
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -135 3.9 AAGTGTGACCTAAATCTAGTTG Shewmr7_1103
Shewanella sp W3-18-1
Position: -136
Score: 3.72137
Sequence: AAGTGTGACCTAAATCTATTTG
Locus tag: Sputw3181_1190
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Sputw3181_1191
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Sputw3181_1192
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -136 3.7 AAGTGTGACCTAAATCTATTTG Sputw3181_1190
Shewanella woodyi ATCC 51908
Position: -157
Score: 4.17323
Sequence: AAGTGTGATCTAAATCTAGTTG
Locus tag: Swoo_3548
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Swoo_3547
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Swoo_3546
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA-deoB-deoD-2 -157 4.2 AAGTGTGATCTAAATCTAGTTG Swoo_3548
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