Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing frdC1 gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -144
Score: 4.08769
Sequence: GTTTGTGATCCGCTTCCAATAA
Locus tag: Sama_3222
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sama_3221
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sama_3220
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Sama_3219
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1-fdrC2-frdA-frdB -144 4.1 GTTTGTGATCCGCTTCCAATAA Sama_3222
Shewanella baltica OS155
Position: -145
Score: 4.2724
Sequence: TTTTGTGATCTTCTTCTAAGAG
Position: -105
Score: 4.07763
Sequence: TCAATTGATCTGGCTCACGTTT
Locus tag: Sbal_3937
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sbal_3936
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sbal_3935
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Sbal_3934
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1-fdrC2-frdA-frdB -145 4.3 TTTTGTGATCTTCTTCTAAGAG Sbal_3937
-105 4.1 TCAATTGATCTGGCTCACGTTT
Shewanella frigidimarina NCIMB 400
Position: -135
Score: 3.84565
Sequence: TTGTGTGACCCGCTTCTAACTC
Position: -103
Score: 3.8207
Sequence: ATAGGTGAACATTATCACGGTT
Locus tag: Sfri_0456
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sfri_0457
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Sfri_0458
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1-frdA-frdB -135 3.8 TTGTGTGACCCGCTTCTAACTC Sfri_0456
-103 3.8 ATAGGTGAACATTATCACGGTT
Shewanella oneidensis MR-1
Position: -144
Score: 4.03208
Sequence: TTTTGTGATCATCTTCTAAGAG
Position: -79
Score: 3.93419
Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: SO0396
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: SO0397
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: SO0398
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: SO0399
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1-fdrC2-frdA-frdB -144 4 TTTTGTGATCATCTTCTAAGAG SO0396
-79 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella pealeana ATCC 700345
Position: -138
Score: 4.70837
Sequence: ATTTGTGATCTTGATCTAATAG
Position: -106
Score: 3.96574
Sequence: AAGGGTGAGTTCCTTCACGAAA
Position: -94
Score: 4.0655
Sequence: TTTGTTGATCTATCTCACGGTT
Locus tag: Spea_0392
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Spea_0393
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Spea_0394
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Spea_0395
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1-fdrC2-frdA-frdB -138 4.7 ATTTGTGATCTTGATCTAATAG Spea_0392
-106 4 AAGGGTGAGTTCCTTCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella piezotolerans WP3
Position: -106
Score: 3.8013
Sequence: TAGGGTGAGCAAAGTCACGATT
Position: -94
Score: 3.87027
Sequence: TTTGTTGATCTATCTCACTGTT
Locus tag: swp_0428
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: swp_0429
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: swp_0430
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: swp_0431
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1-fdrC2-frdA-frdB -106 3.8 TAGGGTGAGCAAAGTCACGATT swp_0428
-94 3.9 TTTGTTGATCTATCTCACTGTT
Shewanella putrefaciens CN-32
Position: -144
Score: 4.2724
Sequence: TTTTGTGATCTTCTTCTAAGAG
Position: -67
Score: 4.12941
Sequence: ATTTGTGAGCGATATTAACTTT
Locus tag: Sputcn32_3441
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sputcn32_3440
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sputcn32_3439
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Sputcn32_3438
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1-fdrC2-frdA-frdB -144 4.3 TTTTGTGATCTTCTTCTAAGAG Sputcn32_3441
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sediminis HAW-EB3
Position: -126
Score: 4.49186
Sequence: GTTTGTGATCTGCTTCAAATAG
Locus tag: Ssed_4116
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
frdC1 -126 4.5 GTTTGTGATCTGCTTCAAATAG Ssed_4116
Shewanella sp ANA-3
Position: -144
Score: 4.18325
Sequence: TTTTGTGATCCTCTTCTAAGAG
Position: -77
Score: 3.93419
Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: Shewana3_0401
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Shewana3_0402
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Shewana3_0403
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Shewana3_0404
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1-fdrC2-frdA-frdB -144 4.2 TTTTGTGATCCTCTTCTAAGAG Shewana3_0401
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4
Position: -144
Score: 4.18325
Sequence: TTTTGTGATCCTCTTCTAAGAG
Position: -77
Score: 3.93419
Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: Shewmr4_0402
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Shewmr4_0403
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Shewmr4_0404
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Shewmr4_0405
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1-fdrC2-frdA-frdB -144 4.2 TTTTGTGATCCTCTTCTAAGAG Shewmr4_0402
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7
Position: -144
Score: 4.18325
Sequence: TTTTGTGATCCTCTTCTAAGAG
Position: -76
Score: 3.93419
Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: Shewmr7_3623
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Shewmr7_3622
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Shewmr7_3621
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Shewmr7_3620
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1-fdrC2-frdA-frdB -144 4.2 TTTTGTGATCCTCTTCTAAGAG Shewmr7_3623
-76 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp W3-18-1
Position: -144
Score: 4.2724
Sequence: TTTTGTGATCTTCTTCTAAGAG
Position: -67
Score: 4.12941
Sequence: ATTTGTGAGCGATATTAACTTT
Locus tag: Sputw3181_0498
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sputw3181_0499
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sputw3181_0500
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Sputw3181_0501
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1-fdrC2-frdA-frdB -144 4.3 TTTTGTGATCTTCTTCTAAGAG Sputw3181_0498
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella woodyi ATCC 51908
Position: -138
Score: 4.77438
Sequence: GTTTGTGATGTGGTTCAAAAAA
Locus tag: Swoo_0507
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
frdC1 -138 4.8 GTTTGTGATGTGGTTCAAAAAA Swoo_0507
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