Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of IscR regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: IscR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Iron-sulfur cluster biogenesis
Effector: Iron-sulfur cluster redox state
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_2872
Regulated genes 5
Built upon 93 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -47
Score: 4.3
Sequence: AATCCATACTAAAACACTCAAGCAT
Locus tag: Ssed_0179
Ssed_0179 -47 4.3 AATCCATACTAAAACACTCAAGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nfuA
Ortholog function: NfuA Fe-S protein maturation
Shewanella oneidensis MR-1 SO_4619 -46 5 AATTCTTACTAAAACACTCAGGTAT
Shewanella putrefaciens CN-32 Sputcn32_3794 -46 5 AATTCTTACTAAAACACTCAGGTAT
Shewanella sp W3-18-1 Sputw3181_0119 -46 5 AATTCTTACTAAAACACTCAGGTAT
Shewanella sp ANA-3 Shewana3_4003 -46 5 AATTCTTACTAAAACACTCAGGTAT
Shewanella sp MR-4 Shewmr4_3804 -46 5 AATTCTTACTAAAACACTCAGGTAT
Shewanella sp MR-7 Shewmr7_3880 -46 5 AATTCTTACTAAAACACTCAGGTAT
Shewanella baltica OS155 Sbal_0142 -46 5 AATTCTTACTAAAACACTCAGGTAT
Shewanella denitrificans OS217 Sden_3528 -46 5.4 GTATCTTACTAAATTACTCAGGTAT
Shewanella frigidimarina NCIMB 400 Sfri_0244 -46 5.1 AATTCTTACTAATTTACTCAGGTAT
Shewanella amazonensis SB2B Sama_3502 -44 4.7 AATTCTTAGTAATTTACTCAGGTTT
Shewanella loihica PV-4 Shew_0106 -46 4.5 AATTCTTACTAAATCACTCGGGTTT
Shewanella pealeana ATCC 700345 Spea_4010 -47 4.5 AATTCTTACTAAAACACTCAGGTTT
Shewanella halifaxensis HAW-EB4 Shal_0247 -47 4.5 AATTCTTACTAAAACACTCAGGTTT
Shewanella piezotolerans WP3 swp_4841 -48 4.5 AATTCTTACTAAAACACTCAGGTTT
Shewanella sediminis HAW-EB3 Ssed_0179 -47 4.3 AATCCATACTAAAACACTCAAGCAT
Shewanella woodyi ATCC 51908 Swoo_0159 -46 4.4 AATCCATACTAAAACACTCAAGTTT
Position: -64
Score: 5.5
Sequence: TTACTTGAACAAAATGGTCAGGTAT
Locus tag: Ssed_1095
Ssed_1095 -64 5.5 TTACTTGAACAAAATGGTCAGGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: erpA
Ortholog function: ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
Shewanella oneidensis MR-1 SO_1304 -88 5.8 ATACTTGAACAAAATAGTCAGGTAA
Shewanella putrefaciens CN-32 Sputcn32_1123 -64 5.8 ATACTTGAACAAAATAGTCAGGTAA
Shewanella sp W3-18-1 Sputw3181_3041 -64 5.8 ATACTTGAACAAAATAGTCAGGTAA
Shewanella sp ANA-3 Shewana3_3067 -64 5.8 ATACTTGAACAAAATAGTCAGGTAA
Shewanella sp MR-4 Shewmr4_2889 -64 5.8 ATACTTGAACAAAATAGTCAGGTAA
Shewanella sp MR-7 Shewmr7_2971 -64 5.8 ATACTTGAACAAAATAGTCAGGTAA
Shewanella baltica OS155 Sbal_1163 -64 5.7 ATACTTGAACAAAACAGTCAGGTAA
Shewanella denitrificans OS217 Sden_2815 -62 5.8 ATACTTGAACAAAATAGTCAGGTAA
Shewanella frigidimarina NCIMB 400 Sfri_2976 -63 5.8 ATACTTGAACAAAATAGTCAGGTAA
Shewanella amazonensis SB2B Sama_0843 -64 5.8 ATACTTGAACAAAATAGTCAGGTAA
Shewanella loihica PV-4 Shew_1017 -64 5.8 TTACTTGAACAAAATAGTCAGGTAT
Shewanella pealeana ATCC 700345 Spea_0985 -64 5.7 TTACTTGAACAAAACACTCAGGTAT
Shewanella halifaxensis HAW-EB4 Shal_1036 -64 5.7 TTACTTGAACAAAACACTCAGGTAT
Shewanella piezotolerans WP3 swp_3849 -64 5.4 TTACTTGAACAAAACGGTCAGGTAT
Shewanella sediminis HAW-EB3 Ssed_1095 -64 5.5 TTACTTGAACAAAATGGTCAGGTAT
Shewanella woodyi ATCC 51908 Swoo_1203 -64 5.8 ATACTTGAACAAAATGGTCAGGTAT
Position: -63
Score: 6.4
Sequence: ATACTTGACTAAAATAGTCGGGTAT
Locus tag: Ssed_2872
Ssed_2872 -63 6.4 ATACTTGACTAAAATAGTCGGGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iscR
Ortholog function: Iron-sulfur cluster regulator IscR
Shewanella oneidensis MR-1 SO_2263 -90 5.5 ATACTTGAGTGATTTACTAGGTTTT
-65 6.4 ATACTTGACTGATTTACTCGGGTAT
Shewanella putrefaciens CN-32 Sputcn32_2150 -91 4.3 TTACCTGAGTGTTTTAGTAGGACTT
-66 6.4 ATACTTGACTAATTTACTCGGGTAT
Shewanella sp W3-18-1 Sputw3181_1861 -91 4.3 TTACCTGAGTGTTTTAGTAGGACTT
-66 6.4 ATACTTGACTAATTTACTCGGGTAT
Shewanella sp ANA-3 Shewana3_2281 -90 5.4 ATACCTGAGTGTTTTACTAGGTTTT
-65 6.3 ATACTTGACTGAAATACTCGGGTAT
Shewanella sp MR-4 Shewmr4_1738 -90 5.6 ATACTTGAGTATTTTACTAGGGTTT
-65 6.4 ATACTTGACTGAATTACTCGGGTAT
Shewanella sp MR-7 Shewmr7_1818 -90 5.4 ATACTTGAGTGTTTTACTAGGTTTT
-65 6.4 ATACTTGACTGAAATACTCAGGTAT
Shewanella baltica OS155 Sbal_2398 -90 5.4 ATACTTGAGTGTTTTAGTAGGTTTT
-64 6.4 ATACTTGACTGATTTACTCGGGTAT
Shewanella denitrificans OS217 Sden_1457 -88 5.1 ATACTTGAGTAAAACACTAGGTTTA
-63 6.4 ATACTTGACTAAATTACTCGGGTAT
Shewanella frigidimarina NCIMB 400 Sfri_2425 -89 4.5 ATACCCGAGTGTTTTGGTAGGATTA
-64 6.2 ATACTTGACTAAATTACTAGGGTAT
Shewanella amazonensis SB2B Sama_1292 -91 5.6 ATACTTGAGTAAATTAGTTGGTTTT
-66 6.5 ATAGTTGACTAAATTACTCAGGTAT
Shewanella loihica PV-4 Shew_2318 -90 5.1 ATACCTGACTAATCTGCTAGGTTTT
-65 6.4 ATACTTGACTAAAACAGTCAAGTAT
Shewanella pealeana ATCC 700345 Spea_1487 -90 5 ATACTTGACCGAATTGCTAGGCTTT
-65 6.4 ATACTTGACTAAAATAGTCGGGTAT
Shewanella halifaxensis HAW-EB4 Shal_1571 -90 4.5 ATACCTGACCAAATAGCTAGGCTTA
-65 6 ATACTTGACTGAAACGGTCGGGTAT
Shewanella piezotolerans WP3 swp_1693 -90 5.2 ATACTTGACCAAACCACTAGGTTAA
-65 6.5 ATACTTGACTAAATTACTCAGGTAT
Shewanella sediminis HAW-EB3 Ssed_2872 -161 4.5 ATACCCCACCAAAGTGGCAGGGTAT
-63 6.4 ATACTTGACTAAAATAGTCGGGTAT
Shewanella woodyi ATCC 51908 Swoo_1775 -215 4.1 TTTCGTGAGTATTATGGTAAAGATT
-90 5.1 ATACTTGACTAAACTACTAGGTTTA
-65 6.4 ATACTTGACTAAAACACTCAGGTAT
Position: -98
Score: 5.6
Sequence: ATTCCTGAGCAATTTAGTCAAGTTT
Locus tag: Ssed_4124
Ssed_4124 -98 5.6 ATTCCTGAGCAATTTAGTCAAGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN or NorA
Shewanella oneidensis MR-1 SO_4302 -167 5.1 AATCTTGACTATTTTAGTCAAGATT
Shewanella putrefaciens CN-32 Sputcn32_3576 -90 5.6 ATTCCTGAGTGTTTTAGTCGGGTTT
Shewanella sp W3-18-1 Sputw3181_3715 -90 5.6 ATTCCTGAGTGTTTTAGTCGGGTTT
Shewanella sp ANA-3 Shewana3_0397 -90 5.2 ATGCCCGACTAATTTAGTCAGGATT
Shewanella sp MR-4 Shewmr4_0398 -90 5.2 ATGCCCGACTAATTTAGTCAGGATT
Shewanella sp MR-7 Shewmr7_3627 -90 5.2 ATGCCCGACTAATTTAGTCAGGATT
Shewanella baltica OS155 Sbal_3989 -89 5.2 AATCCTGAGTATTTTAGTCGGGTTT
Shewanella amazonensis SB2B Sama_3236 -87 4.8 TTAACCCAGCAAAATACTCAAGTTT
Shewanella loihica PV-4 Shew_0328 -99 5.1 AATCCCGAGTAAAACACTCAAGTTT
Shewanella pealeana ATCC 700345 Spea_0383 -102 5.8 TTAACTGAGTATTTTACTCAAGTAA
Shewanella halifaxensis HAW-EB4 Shal_3908 -104 5.7 TTACTTGAGCATTTTACTCAGGTAA
Shewanella piezotolerans WP3 swp_0412 -88 5.5 TTACCCGAGCATTTTACTCAACTAA
Shewanella sediminis HAW-EB3 Ssed_4124 -98 5.6 ATTCCTGAGCAATTTAGTCAAGTTT
Shewanella woodyi ATCC 51908 Swoo_0492 -97 5.4 TTACCCTAGTGTTTTAGTCGGGAAT
Position: -125
Score: 5.4
Sequence: GTACCTTAGTAATTTACTAGGGTAT
Locus tag: Ssed_4199
Ssed_4199 -125 5.4 GTACCTTAGTAATTTACTAGGGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbA
Ortholog function: hypothetical protein involved in nitrosative stress
Shewanella oneidensis MR-1 SO_0324 -29 4.1 TTATCCGAGTCACAGACTAAGGTAT
Shewanella putrefaciens CN-32 Sputcn32_3663 -29 4.9 ATATCCGAGTAACTGACTAAGGTAT
Shewanella sp W3-18-1 Sputw3181_3804 -29 4.9 ATATCCGAGTAACTGACTAAGGTAT
Shewanella sp ANA-3 Shewana3_3845 -29 4.4 TTATCCGAGTGACAGACTAAGGTAT
Shewanella sp MR-4 Shewmr4_3649 -29 4.4 TTATCCGAGTGACAGACTAAGGTAT
Shewanella sp MR-7 Shewmr7_0295 -29 4.4 TTATCCGAGTGACAGACTAAGGTAT
Shewanella baltica OS155 Sbal_4067 -29 4.5 ATATCCGAGTGACAAGCTAAGGTAT
Shewanella frigidimarina NCIMB 400 Sfri_0404 -43 5.6 ATATCCGACTGTTTTACTAAGGTAT
Shewanella amazonensis SB2B Sama_3326 -30 5.1 AAAACCAAGTAAATTACTTGGGTAT
Shewanella loihica PV-4 Shew_0259 -28 4.8 ATAACCCAGTAAAGAAGTCAGATAT
Shewanella pealeana ATCC 700345 Spea_0303 -28 5 ATAACCAAGTAGCTTACTAAGGTAT
Shewanella halifaxensis HAW-EB4 Shal_3986 -28 5.1 ATAACCCAGTAACTTACTAAGGTAT
Shewanella piezotolerans WP3 swp_2171 -28 4.8 ATAACCCAGTGGCTTACTAAGGTAT
Shewanella sediminis HAW-EB3 Ssed_4199 -125 5.4 GTACCTTAGTAATTTACTAGGGTAT
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