Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of TyrR regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_2928
Regulated genes 22
Built upon 312 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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© 2009-2020 RegPrecise
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -211
Score: 4.4
Sequence: GTGTAAAGCCGGGTCTACAC
Position: -137
Score: 4.2
Sequence: ATGTAAAGTTAACTGTACGT
Locus tag: Ssed_0171
Ssed_0171 -211 4.4 GTGTAAAGCCGGGTCTACAC
-137 4.2 ATGTAAAGTTAACTGTACGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ipdC
Ortholog function: Indole-3-pyruvate decarboxylase (EC 4.1.1.74)
Shewanella denitrificans OS217 Sden_1376 -181 4.2 TTGTATACAAAATATGACAA
Shewanella amazonensis SB2B Sama_1025 -203 3.9 ACGTAAGCCAGGCTTTCCAA
-138 3.8 GTGTCACGCCCGGATGACAG
Shewanella loihica PV-4 Shew_3635 -134 4.1 CTGTAACGATATCTTGTCAC
Shewanella sediminis HAW-EB3 Ssed_0171 -211 4.4 GTGTAAAGCCGGGTCTACAC
-137 4.2 ATGTAAAGTTAACTGTACGT
Position: -106
Score: 4.6
Sequence: GTGTAATTGAAAGTTTACAC
Locus tag: Ssed_0892
Ssed_0892 -106 4.6 GTGTAATTGAAAGTTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: brnQ
Ortholog function: Branched-chain amino acid transport system carrier protein
Shewanella oneidensis MR-1 SO_0949 -121 5 GTGTAAACATAGGTTTGCAC
Shewanella putrefaciens CN-32 Sputcn32_0889 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp W3-18-1 Sputw3181_3284 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp ANA-3 Shewana3_3332 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-4 Shewmr4_0794 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-7 Shewmr7_3229 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella baltica OS155 Sbal_0842 -107 5.1 GTGTAAACAAAGATTTGCAC
Shewanella denitrificans OS217 Sden_0746 -229 4.1 GAGTATCGAAAAGTTTACAC
Shewanella frigidimarina NCIMB 400 Sfri_0662 -122 4.8 GTGTATTTTTAACTTTACAA
Shewanella amazonensis SB2B Sama_2740 -109 4.5 CTGTAATTCTGGCGTTACAC
Shewanella loihica PV-4 Shew_0769 -102 4.6 GTGTAATAAGAAGTTTACAC
Shewanella pealeana ATCC 700345 Spea_0804 -90 5.2 GTGTAAAGTAATAATTACAC
Shewanella halifaxensis HAW-EB4 Shal_0859 -94 5.1 GTGTAAACTAATCATTACAC
Shewanella piezotolerans WP3 swp_4229 -153 5 GTGTAAACCAAATATTACAC
Shewanella sediminis HAW-EB3 Ssed_0892 -106 4.6 GTGTAATTGAAAGTTTACAC
Shewanella woodyi ATCC 51908 Swoo_0894 -67 5.1 GTGTAATCTAAAGTTTACAC
Position: -146
Score: 3.4
Sequence: TTGCAAATACAACTTTTTAT
Locus tag: Ssed_1414
Ssed_1414 -146 3.4 TTGCAAATACAACTTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: Malate synthase (EC 2.3.3.9)
Shewanella oneidensis MR-1 SO_1483 -372 3.7 GTGTAATCATTGTTTTTCGA
Shewanella putrefaciens CN-32 Sputcn32_1238 -304 4.7 GTGTAATTATAAATTTACGT
Shewanella sp W3-18-1 Sputw3181_2866 -303 4.5 GTGTAATTATAAATTTACTT
Shewanella sp ANA-3 Shewana3_2943 -372 4.3 CTGTATATTTAAATTTTCAA
Shewanella sp MR-4 Shewmr4_2767 -372 4.3 CTGTATAGTTAAATTTTCAA
Shewanella sp MR-7 Shewmr7_2845 -372 3.8 CTGTACATTTAAATTTTCAG
Shewanella baltica OS155 Sbal_1316 -380 3.6 CTGTATTAATATATTTACTG
Shewanella denitrificans OS217 Sden_1245 -324 4 TTGTAAGTTATTATTTACTG
Shewanella frigidimarina NCIMB 400 Sfri_1101 -458 4.4 tgGTAAAGaaAtATTTACAg
Shewanella amazonensis SB2B Sama_2381 -450 4.1 TTGTAAATTAAATATTAAAT
-364 3.7 GTGTATTAAAAATCTTACAG
Shewanella loihica PV-4 Shew_1275 -393 3.4 CTGTATCGACAAAATTACTA
Shewanella pealeana ATCC 700345 Spea_1290 -415 3.9 GTGGCAATAATTGTTAACGA
Shewanella halifaxensis HAW-EB4 Shal_1352 -458 4.1 aTGTAAAagTAtATTgACgC
Shewanella piezotolerans WP3 swp_1433 -412 4.2 CTGTATTTATAATATTACAC
Shewanella sediminis HAW-EB3 Ssed_1414 -371 4.2 CTGTAAGTTTATTTTTACGC
Shewanella woodyi ATCC 51908 Swoo_1528 -401 3.9 GTGTATCATTAAGTTTACTT
-341 3.6 TTGGTAAATTTGTCTGACAA
Position: -185
Score: 4.5
Sequence: CTGTAAATCCTGAGTGACAT
Locus tag: Ssed_1473
Ssed_1473 -185 4.5 CTGTAAATCCTGAGTGACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO_1677 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1397 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp W3-18-1 Sputw3181_2704 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp ANA-3 Shewana3_2771 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-4 Shewmr4_2597 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-7 Shewmr7_2664 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella baltica OS155 Sbal_1495 -162 4.3 CTGTAAATCCTTACTGACAT
Shewanella denitrificans OS217 Sden_1943 -159 4.4 GTGTAAATCTTCAGTGACAA
Shewanella frigidimarina NCIMB 400 Sfri_1338 -140 4.1 CTGTAAATCTTCACTGACAA
Shewanella amazonensis SB2B Sama_1375 -195 3.8 GTGTCAATCTCAGTTCCCGC
-173 4.6 CTGTAAATCCAGAGTGACAA
Shewanella loihica PV-4 Shew_1667 -168 4.4 CTGTAAATTCAGCCTGACAA
Shewanella pealeana ATCC 700345 Spea_2783 -231 4.5 GTGTAAATTCTATGTGACAA
Shewanella halifaxensis HAW-EB4 Shal_2878 -231 4.4 GTGTAAATCCTTTGTGACAT
Shewanella piezotolerans WP3 swp_3387 -75 3.8 TTTTAAGTTGATGTTTACAC
Shewanella sediminis HAW-EB3 Ssed_1473 -185 4.5 CTGTAAATCCTGAGTGACAT
Shewanella woodyi ATCC 51908 Swoo_3202 -173 4.7 CTGTAAATCTTGAGTGACAT
Position: -156
Score: 5.2
Sequence: GTGGAAAGCTAAATTGCCAC
Locus tag: Ssed_1877
Ssed_1877 -156 5.2 GTGGAAAGCTAAATTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: Leucine dehydrogenase (EC 1.4.1.9)
Shewanella oneidensis MR-1 SO_2638 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_2238 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp W3-18-1 Sputw3181_1771 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp ANA-3 Shewana3_1742 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-4 Shewmr4_1598 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-7 Shewmr7_1673 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella baltica OS155 Sbal_2483 -134 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella denitrificans OS217 Sden_1823 -140 4.9 GTGGCAAGCAAAATTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_2265 -178 5.2 GTGGCAAGCTAAATTTCCAC
Shewanella amazonensis SB2B Sama_2067 -147 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella loihica PV-4 Shew_1555 -157 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella pealeana ATCC 700345 Spea_2543 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella piezotolerans WP3 swp_1857 -158 4.8 GTGGAAAGCAGAATTGCCAC
Shewanella sediminis HAW-EB3 Ssed_1877 -156 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella woodyi ATCC 51908 Swoo_2710 -157 5.1 GTGGAAAGCAAAATTGCCAC
Position: -182
Score: 4
Sequence: CTGTAACGCCATCAATACAA
Position: -161
Score: 4
Sequence: GTGTAAGCTTGCGTTTACAG
Locus tag: Ssed_2287
Ssed_2287 -182 4 CTGTAACGCCATCAATACAA
-161 4 GTGTAAGCTTGCGTTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: emrD
Ortholog function: multidrug resistance protein D
Shewanella oneidensis MR-1 SO_2389 -152 4.5 ATGTAAGCTTAATTTTACAG
Shewanella putrefaciens CN-32 Sputcn32_2030 -257 3.7 ATATCAAGTATTTTATCCAC
-114 4.6 GCGTAAGTTTAACTTTACAA
Shewanella sp W3-18-1 Sputw3181_1983 -257 3.7 ATATCAAGTATTTTATCCAC
-114 4.6 GCGTAAGTTTAACTTTACAA
Shewanella sp ANA-3 Shewana3_1989 -152 4.6 GTGTAAGCTTAGTTTGACAA
Shewanella sp MR-4 Shewmr4_1936 -218 4 GTGGCAATTAATTTTACCAG
-152 4.6 GTGTAAGCTAAATTTTACAG
Shewanella sp MR-7 Shewmr7_2040 -218 4 GTGGCAATTAATTTTACCAG
-152 4.6 GTGTAAGCTAAATTTTACAG
Shewanella baltica OS155 Sbal_2085 -154 4.4 ACGTAAGTTTAGCTTTACAG
Shewanella sediminis HAW-EB3 Ssed_2287 -182 4 CTGTAACGCCATCAATACAA
-161 4 GTGTAAGCTTGCGTTTACAG
Shewanella woodyi ATCC 51908 Swoo_2329 -160 4.1 TCGTAAGTATAGATTTACGC
Position: -334
Score: 3.8
Sequence: ATGGCATGAAATTGTTCCAG
Locus tag: Ssed_2300
Ssed_2300 -334 3.8 ATGGCATGAAATTGTTCCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroA
Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Shewanella oneidensis MR-1 SO_2404 -101 3.8 TAGTAACGTAAACTTGACGT
-80 3.6 ATGTAGTGTGAAGTTGCCAT
Shewanella putrefaciens CN-32 Sputcn32_2044 -299 4 TTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp W3-18-1 Sputw3181_1969 -298 4 TTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp ANA-3 Shewana3_1975 -300 3.9 CTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp MR-4 Shewmr4_1922 -300 3.9 CTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp MR-7 Shewmr7_2056 -298 3.9 CTGGCAAAAAAGCCTGCCAA
-101 4.5 TTGTAATCTTAACTTGACGC
Shewanella baltica OS155 Sbal_2068 -299 4 TTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
-81 3.7 GTGTAGCGTGAAGTTGCCAT
Shewanella denitrificans OS217 Sden_1751 -131 4.5 TTGGAAAGATAAGCTGACAA
Shewanella frigidimarina NCIMB 400 Sfri_2125 -328 4.3 TTGGAAAGTTAACGTAACAA
-107 4.1 CTGTAATGAATTTGTTCCAC
Shewanella amazonensis SB2B Sama_1734 -266 3.8 ATGGCAACAAATCTTGCAAT
Shewanella loihica PV-4 Shew_1952 -268 4 TTGGCAAATTTTCATGCCAG
Shewanella pealeana ATCC 700345 Spea_2071 -290 4.2 CCGGAAATTTTTAGTTCCAC
Shewanella sediminis HAW-EB3 Ssed_2300 -334 3.8 ATGGCATGAAATTGTTCCAG
Shewanella woodyi ATCC 51908 Swoo_2309 -323 3.8 CTGGCATGTTTTTCTTCCAC
-89 3.9 TTGTGTATCAATATTTGCAA
Position: -135
Score: 3.8
Sequence: CTGGAACAATTTCATGCCAT
Locus tag: Ssed_2301
Ssed_2301 -135 3.8 CTGGAACAATTTCATGCCAT
Supported by regulated orthologs from reference regulons