Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of FabR regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: FabR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid biosynthesis
Effector: Unsaturated acyl-ACP; Unsaturated acyl-CoA
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_4339
Regulated genes 7
Built upon 118 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -327
Score: 6.6
Sequence: AGCGTACACGTGTACGCT
Locus tag: Ssed_1618
Ssed_1618 -327 6.6 AGCGTACACGTGTACGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadL
Ortholog function: Long-chain fatty acid transport protein
Shewanella oneidensis MR-1 SO_3099 -311 6.2 GGCGTACAGGTGTACGCT
Shewanella putrefaciens CN-32 Sputcn32_2470 -303 6.4 AGCGTACACTTGTACGCT
Shewanella sp W3-18-1 Sputw3181_1538 -303 6.4 AGCGTACACTTGTACGCT
Shewanella sp ANA-3 Shewana3_1450 -311 6.4 AGCGTACAAGTGTACGCT
Shewanella sp MR-4 Shewmr4_1397 -311 6.4 AGCGTACATGTGTACGCT
Shewanella sp MR-7 Shewmr7_1462 -311 6.4 AGCGTACATGTGTACGCT
Shewanella baltica OS155 Sbal_2771 -327 5.3 AGCGCACACTTGTGCGCT
Shewanella amazonensis SB2B Sama_2178 -297 6.4 AGCGTACACATGTACGCT
Shewanella loihica PV-4 Shew_2436 -333 6.4 AGCGTACAAGTGTACGCT
Shewanella pealeana ATCC 700345 Spea_2609 -319 6.4 AGCGTACACTTGTACGCT
Shewanella halifaxensis HAW-EB4 Shal_2681 -241 6.2 AGCGTACATTTGTACGCT
Shewanella piezotolerans WP3 swp_3153 -316 6.3 AGCGTACATCTGTACGCT
Shewanella sediminis HAW-EB3 Ssed_1618 -327 6.6 AGCGTACACGTGTACGCT
Shewanella woodyi ATCC 51908 Swoo_3037 -318 5.3 AGCTTACAACTGTACACC
Position: -88
Score: 6.6
Sequence: AGCGTACACGTGTACGCT
Locus tag: Ssed_2012
Ssed_2012 -88 6.6 AGCGTACACGTGTACGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hylII
Ortholog function: COG1272: Predicted membrane protein hemolysin III homolog
Shewanella oneidensis MR-1 SO_2447 -114 6.5 AGCGTACACGTGTAAGCT
Shewanella putrefaciens CN-32 Sputcn32_1920 -85 6.3 AGCTTACAAGTGTACGCT
Shewanella sp W3-18-1 Sputw3181_2088 -85 6.3 AGCTTACAAGTGTACGCT
Shewanella sp ANA-3 Shewana3_1934 -84 6.4 AGCTTACACGTGTAAGCT
Shewanella sp MR-4 Shewmr4_1879 -84 6.4 AGCTTACACGTGTAAGCT
Shewanella sp MR-7 Shewmr7_2099 -84 6.4 AGCTTACACGTGTAAGCT
Shewanella baltica OS155 Sbal_2325 -85 6.3 AGCTTACAAGTGTACGCT
Shewanella denitrificans OS217 Sden_1768 -84 5.9 AGCTTACACGCGTACGCT
Shewanella frigidimarina NCIMB 400 Sfri_1873 -94 5.4 AGCTTACACGTGTTCACC
Shewanella amazonensis SB2B Sama_1862 -89 5.8 AGCGTACACATGTACTCT
Shewanella loihica PV-4 Shew_2098 -90 6.1 GGCGTACACATGTACGCT
Shewanella pealeana ATCC 700345 Spea_2385 -36 6.3 AGCTTACACGTGTTCGCT
Shewanella halifaxensis HAW-EB4 Shal_1898 -87 6.1 AGCGTACACGTGTGCGCT
Shewanella piezotolerans WP3 swp_2328 -130 6.3 AGCTAACACGTGTACGCT
Shewanella sediminis HAW-EB3 Ssed_2012 -88 6.6 AGCGTACACGTGTACGCT
Shewanella woodyi ATCC 51908 Swoo_2594 -88 6.5 AGCTTACACGTGTACGCT
Position: -57
Score: 6.3
Sequence: AGCTTACACGTGTTCGCT
Locus tag: Ssed_2468
Ssed_2468 -57 6.3 AGCTTACACGTGTTCGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fabA
Ortholog function: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
Shewanella oneidensis MR-1 SO_1856 -53 6.3 AGCTTACACGTGTTCGCT
Shewanella putrefaciens CN-32 Sputcn32_1637 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella sp W3-18-1 Sputw3181_2388 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella sp ANA-3 Shewana3_1606 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella sp MR-4 Shewmr4_1545 -53 6.3 AGCTTACACGTGTTCGCT
Shewanella sp MR-7 Shewmr7_1612 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella baltica OS155 Sbal_2565 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella denitrificans OS217 Sden_2465 -60 6.3 AGCGTACACCTGTTCGCT
Shewanella frigidimarina NCIMB 400 Sfri_2656 -60 6.3 AGCTTACACGTGTTCGCT
Shewanella amazonensis SB2B Sama_1605 -58 6 GGCGTACAGGTGTTCGCT
Shewanella loihica PV-4 Shew_1817 -55 6 GGCGTACACGTGTTAGCT
Shewanella pealeana ATCC 700345 Spea_1951 -55 6.4 AGCGTACACGTGTTCGCT
Shewanella halifaxensis HAW-EB4 Shal_2348 -55 6.4 AGCGTACACGTGTTCGCT
Shewanella piezotolerans WP3 swp_2802 -55 6.4 AGCGTACACGTGTTCGCT
Shewanella sediminis HAW-EB3 Ssed_2468 -57 6.3 AGCTTACACGTGTTCGCT
Shewanella woodyi ATCC 51908 Swoo_2148 -56 6.3 AGCTTACACGTGTTCGCT
Position: -206
Score: 5.7
Sequence: AGAGTACAAGTGTAAGCT
Locus tag: Ssed_3201
Ssed_3201 -206 5.7 AGAGTACAAGTGTAAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfaR
Ortholog function: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR
Shewanella loihica PV-4 Shew_2664 -194 5.9 AGCGAACATATGTAAGCT
Shewanella pealeana ATCC 700345 Spea_2906 -207 5.5 AGCTTACAAGTGTTCACT
Shewanella halifaxensis HAW-EB4 Shal_3007 -205 5.2 AGCTTACAAGTGTTCACC
Shewanella piezotolerans WP3 swp_3549 -207 5.4 AGCTTACATCTGTTCACT
Shewanella sediminis HAW-EB3 Ssed_3201 -206 5.7 AGAGTACAAGTGTAAGCT
Shewanella woodyi ATCC 51908 Swoo_1424 -205 4.6 AATAAACACGTGTAAGCT
Position: -129
Score: 6.3
Sequence: AGCGTACATCTGTACGCT
Locus tag: Ssed_4339
Ssed_4339 -129 6.3 AGCGTACATCTGTACGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fabR
Ortholog function: Unsaturated fatty acid biosythesis repressor FabR, TetR family
Shewanella oneidensis MR-1 SO_0198 -119 6.3 AGCGTACAGCTGTAAGCT
Shewanella putrefaciens CN-32 Sputcn32_3541 -119 6.2 AGCGTACATCTGTAAGCT
Shewanella sp W3-18-1 Sputw3181_3678 -119 6.2 AGCGTACATCTGTAAGCT
Shewanella sp ANA-3 Shewana3_0178 -119 6.2 AGCGTACAACTGTAAGCT
Shewanella sp MR-4 Shewmr4_0177 -119 6.2 AGCGTACAACTGTAAGCT
Shewanella sp MR-7 Shewmr7_0172 -119 6.2 AGCGTACAACTGTAAGCT
Shewanella baltica OS155 Sbal_4180 -119 6.2 AGCGTACATCTGTAAGCT
Shewanella denitrificans OS217 Sden_0230 -121 6.2 AGCGTACATCTGTAAGCT
Shewanella frigidimarina NCIMB 400 Sfri_0124 -121 6.2 AGCGTACAATTGTACGCT
Shewanella amazonensis SB2B Sama_0192 -119 6.3 AGCGTACAGCTGTAAGCT
Shewanella loihica PV-4 Shew_0137 -114 6 AGCGTACAGCTGTAAGCC
Shewanella halifaxensis HAW-EB4 Shal_4155 -55 6.3 AGCGTACATCTGTACGCT
Shewanella piezotolerans WP3 swp_0205 -118 6.4 AGCGTACAGCTGTACGCT
Shewanella sediminis HAW-EB3 Ssed_4339 -129 6.3 AGCGTACATCTGTACGCT
Shewanella woodyi ATCC 51908 Swoo_4711 -128 6.3 AGCGTACATCTGTACGCT
Position: -41
Score: 6.3
Sequence: AGCGTACAGATGTACGCT
Locus tag: Ssed_4340
Ssed_4340 -41 6.3 AGCGTACAGATGTACGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: OLE1
Ortholog function: Fatty acid desaturase (EC 1.14.19.1)
Shewanella oneidensis MR-1 SO_0197 -42 6.3 AGCTTACAGCTGTACGCT
Shewanella putrefaciens CN-32 Sputcn32_3542 -43 6.2 AGCTTACAGATGTACGCT
Shewanella sp W3-18-1 Sputw3181_3679 -43 6.2 AGCTTACAGATGTACGCT
Shewanella sp ANA-3 Shewana3_0177 -21 6.2 AGCTTACAGTTGTACGCT
Shewanella sp MR-4 Shewmr4_0176 -21 6.2 AGCTTACAGTTGTACGCT
Shewanella sp MR-7 Shewmr7_0171 -21 6.2 AGCTTACAGTTGTACGCT
Shewanella baltica OS155 Sbal_4181 -43 6.2 AGCTTACAGATGTACGCT
Shewanella denitrificans OS217 Sden_0229 -41 6.2 AGCTTACAGATGTACGCT
Shewanella frigidimarina NCIMB 400 Sfri_0123 -53 6.2 AGCGTACAATTGTACGCT
Shewanella amazonensis SB2B Sama_0191 -29 6.3 AGCTTACAGCTGTACGCT
Shewanella loihica PV-4 Shew_0136 -43 6 GGCTTACAGCTGTACGCT
Shewanella pealeana ATCC 700345 Spea_0162 -9 6 GGCGTACAGATGTACGCT
Shewanella halifaxensis HAW-EB4 Shal_4156 -40 6.3 AGCGTACAGATGTACGCT
Shewanella piezotolerans WP3 swp_0204 -40 6.4 AGCGTACAGCTGTACGCT
Shewanella sediminis HAW-EB3 Ssed_4340 -41 6.3 AGCGTACAGATGTACGCT
Shewanella woodyi ATCC 51908 Swoo_4712 -41 6.3 AGCGTACAGATGTACGCT
Position: -34
Score: 4.8
Sequence: GAGGAACACCTGTACGCT
Locus tag: Ssed_4459
Ssed_4459 -34 4.8 GAGGAACACCTGTACGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lcfE
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1 SO_0075 -121 4.8 GCGGTACACTTGTAAGCT
Shewanella putrefaciens CN-32 Sputcn32_0061 -35 4.8 GCGGTACACTTGTAAGCT
Shewanella sp W3-18-1 Sputw3181_4017 -35 4.8 GCGGTACACTTGTAAGCT
Shewanella sp ANA-3 Shewana3_0080 -34 4.8 GCGGTACACTTGTAAGCT
Shewanella sp MR-4 Shewmr4_0078 -34 4.8 GCGGTACACTTGTAAGCT
Shewanella sp MR-7 Shewmr7_0076 -34 4.8 GCGGTACACTTGTAAGCT
Shewanella baltica OS155 Sbal_4274 -34 4.8 GCGGTACACTTGTAAGCT
Shewanella denitrificans OS217 Sden_0072 -32 4.6 CAGGTACAAGTGTAAGCT
Shewanella frigidimarina NCIMB 400 Sfri_3973 -34 4.6 GCGGAACACTTGTAAGCT
Shewanella amazonensis SB2B Sama_3571 -59 4.6 GAGGAACACTTGTAAGCT
Shewanella loihica PV-4 Shew_3776 -35 4.7 CAGGTACAAGTGTACGCT
Shewanella pealeana ATCC 700345 Spea_4186 -34 4.6 GCGGAACACTTGTAAGCT
Shewanella halifaxensis HAW-EB4 Shal_0063 -34 4.6 GCGGAACACTTGTAAGCT
Shewanella piezotolerans WP3 swp_0114 -121 4.6 GCGGAACACTTGTAAGCT
Shewanella sediminis HAW-EB3 Ssed_4459 -34 4.8 GAGGAACACCTGTACGCT
Shewanella woodyi ATCC 51908 Swoo_4860 -34 5 GAGGTACACCTGTACGCT
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