Propagation of FabR regulog to Shewanella sediminis HAW-EB3
| Source regulog: | FabR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Unsaturated acyl-ACP; Unsaturated acyl-CoA |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella sediminis HAW-EB3 |
| Orthologous TF(s) | Ssed_4339 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -327
Score: 6.6 Sequence: AGCGTACACGTGTACGCT
Locus tag: Ssed_1618
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| Ssed_1618 | -327 | 6.6 | AGCGTACACGTGTACGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadL | ||||
| Ortholog function: Long-chain fatty acid transport protein | ||||
| Shewanella oneidensis MR-1 | SO_3099 | -311 | 6.2 | GGCGTACAGGTGTACGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_2470 | -303 | 6.4 | AGCGTACACTTGTACGCT |
| Shewanella sp W3-18-1 | Sputw3181_1538 | -303 | 6.4 | AGCGTACACTTGTACGCT |
| Shewanella sp ANA-3 | Shewana3_1450 | -311 | 6.4 | AGCGTACAAGTGTACGCT |
| Shewanella sp MR-4 | Shewmr4_1397 | -311 | 6.4 | AGCGTACATGTGTACGCT |
| Shewanella sp MR-7 | Shewmr7_1462 | -311 | 6.4 | AGCGTACATGTGTACGCT |
| Shewanella baltica OS155 | Sbal_2771 | -327 | 5.3 | AGCGCACACTTGTGCGCT |
| Shewanella amazonensis SB2B | Sama_2178 | -297 | 6.4 | AGCGTACACATGTACGCT |
| Shewanella loihica PV-4 | Shew_2436 | -333 | 6.4 | AGCGTACAAGTGTACGCT |
| Shewanella pealeana ATCC 700345 | Spea_2609 | -319 | 6.4 | AGCGTACACTTGTACGCT |
| Shewanella halifaxensis HAW-EB4 | Shal_2681 | -241 | 6.2 | AGCGTACATTTGTACGCT |
| Shewanella piezotolerans WP3 | swp_3153 | -316 | 6.3 | AGCGTACATCTGTACGCT |
| Shewanella sediminis HAW-EB3 | Ssed_1618 | -327 | 6.6 | AGCGTACACGTGTACGCT |
| Shewanella woodyi ATCC 51908 | Swoo_3037 | -318 | 5.3 | AGCTTACAACTGTACACC |
|
Position: -88
Score: 6.6 Sequence: AGCGTACACGTGTACGCT
Locus tag: Ssed_2012
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| Ssed_2012 | -88 | 6.6 | AGCGTACACGTGTACGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hylII | ||||
| Ortholog function: COG1272: Predicted membrane protein hemolysin III homolog | ||||
| Shewanella oneidensis MR-1 | SO_2447 | -114 | 6.5 | AGCGTACACGTGTAAGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_1920 | -85 | 6.3 | AGCTTACAAGTGTACGCT |
| Shewanella sp W3-18-1 | Sputw3181_2088 | -85 | 6.3 | AGCTTACAAGTGTACGCT |
| Shewanella sp ANA-3 | Shewana3_1934 | -84 | 6.4 | AGCTTACACGTGTAAGCT |
| Shewanella sp MR-4 | Shewmr4_1879 | -84 | 6.4 | AGCTTACACGTGTAAGCT |
| Shewanella sp MR-7 | Shewmr7_2099 | -84 | 6.4 | AGCTTACACGTGTAAGCT |
| Shewanella baltica OS155 | Sbal_2325 | -85 | 6.3 | AGCTTACAAGTGTACGCT |
| Shewanella denitrificans OS217 | Sden_1768 | -84 | 5.9 | AGCTTACACGCGTACGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1873 | -94 | 5.4 | AGCTTACACGTGTTCACC |
| Shewanella amazonensis SB2B | Sama_1862 | -89 | 5.8 | AGCGTACACATGTACTCT |
| Shewanella loihica PV-4 | Shew_2098 | -90 | 6.1 | GGCGTACACATGTACGCT |
| Shewanella pealeana ATCC 700345 | Spea_2385 | -36 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella halifaxensis HAW-EB4 | Shal_1898 | -87 | 6.1 | AGCGTACACGTGTGCGCT |
| Shewanella piezotolerans WP3 | swp_2328 | -130 | 6.3 | AGCTAACACGTGTACGCT |
| Shewanella sediminis HAW-EB3 | Ssed_2012 | -88 | 6.6 | AGCGTACACGTGTACGCT |
| Shewanella woodyi ATCC 51908 | Swoo_2594 | -88 | 6.5 | AGCTTACACGTGTACGCT |
|
Position: -57
Score: 6.3 Sequence: AGCTTACACGTGTTCGCT
Locus tag: Ssed_2468
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| Ssed_2468 | -57 | 6.3 | AGCTTACACGTGTTCGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fabA | ||||
| Ortholog function: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) | ||||
| Shewanella oneidensis MR-1 | SO_1856 | -53 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_1637 | -54 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella sp W3-18-1 | Sputw3181_2388 | -54 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella sp ANA-3 | Shewana3_1606 | -54 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella sp MR-4 | Shewmr4_1545 | -53 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella sp MR-7 | Shewmr7_1612 | -54 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella baltica OS155 | Sbal_2565 | -54 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella denitrificans OS217 | Sden_2465 | -60 | 6.3 | AGCGTACACCTGTTCGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2656 | -60 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella amazonensis SB2B | Sama_1605 | -58 | 6 | GGCGTACAGGTGTTCGCT |
| Shewanella loihica PV-4 | Shew_1817 | -55 | 6 | GGCGTACACGTGTTAGCT |
| Shewanella pealeana ATCC 700345 | Spea_1951 | -55 | 6.4 | AGCGTACACGTGTTCGCT |
| Shewanella halifaxensis HAW-EB4 | Shal_2348 | -55 | 6.4 | AGCGTACACGTGTTCGCT |
| Shewanella piezotolerans WP3 | swp_2802 | -55 | 6.4 | AGCGTACACGTGTTCGCT |
| Shewanella sediminis HAW-EB3 | Ssed_2468 | -57 | 6.3 | AGCTTACACGTGTTCGCT |
| Shewanella woodyi ATCC 51908 | Swoo_2148 | -56 | 6.3 | AGCTTACACGTGTTCGCT |
|
Position: -206
Score: 5.7 Sequence: AGAGTACAAGTGTAAGCT
Locus tag: Ssed_3201
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| Ssed_3201 | -206 | 5.7 | AGAGTACAAGTGTAAGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfaR | ||||
| Ortholog function: transcriptional regulator for synthesis of eicosapentaenoic acid, PfaR | ||||
| Shewanella loihica PV-4 | Shew_2664 | -194 | 5.9 | AGCGAACATATGTAAGCT |
| Shewanella pealeana ATCC 700345 | Spea_2906 | -207 | 5.5 | AGCTTACAAGTGTTCACT |
| Shewanella halifaxensis HAW-EB4 | Shal_3007 | -205 | 5.2 | AGCTTACAAGTGTTCACC |
| Shewanella piezotolerans WP3 | swp_3549 | -207 | 5.4 | AGCTTACATCTGTTCACT |
| Shewanella sediminis HAW-EB3 | Ssed_3201 | -206 | 5.7 | AGAGTACAAGTGTAAGCT |
| Shewanella woodyi ATCC 51908 | Swoo_1424 | -205 | 4.6 | AATAAACACGTGTAAGCT |
|
Position: -129
Score: 6.3 Sequence: AGCGTACATCTGTACGCT
Locus tag: Ssed_4339
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| Ssed_4339 | -129 | 6.3 | AGCGTACATCTGTACGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fabR | ||||
| Ortholog function: Unsaturated fatty acid biosythesis repressor FabR, TetR family | ||||
| Shewanella oneidensis MR-1 | SO_0198 | -119 | 6.3 | AGCGTACAGCTGTAAGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_3541 | -119 | 6.2 | AGCGTACATCTGTAAGCT |
| Shewanella sp W3-18-1 | Sputw3181_3678 | -119 | 6.2 | AGCGTACATCTGTAAGCT |
| Shewanella sp ANA-3 | Shewana3_0178 | -119 | 6.2 | AGCGTACAACTGTAAGCT |
| Shewanella sp MR-4 | Shewmr4_0177 | -119 | 6.2 | AGCGTACAACTGTAAGCT |
| Shewanella sp MR-7 | Shewmr7_0172 | -119 | 6.2 | AGCGTACAACTGTAAGCT |
| Shewanella baltica OS155 | Sbal_4180 | -119 | 6.2 | AGCGTACATCTGTAAGCT |
| Shewanella denitrificans OS217 | Sden_0230 | -121 | 6.2 | AGCGTACATCTGTAAGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0124 | -121 | 6.2 | AGCGTACAATTGTACGCT |
| Shewanella amazonensis SB2B | Sama_0192 | -119 | 6.3 | AGCGTACAGCTGTAAGCT |
| Shewanella loihica PV-4 | Shew_0137 | -114 | 6 | AGCGTACAGCTGTAAGCC |
| Shewanella halifaxensis HAW-EB4 | Shal_4155 | -55 | 6.3 | AGCGTACATCTGTACGCT |
| Shewanella piezotolerans WP3 | swp_0205 | -118 | 6.4 | AGCGTACAGCTGTACGCT |
| Shewanella sediminis HAW-EB3 | Ssed_4339 | -129 | 6.3 | AGCGTACATCTGTACGCT |
| Shewanella woodyi ATCC 51908 | Swoo_4711 | -128 | 6.3 | AGCGTACATCTGTACGCT |
|
Position: -41
Score: 6.3 Sequence: AGCGTACAGATGTACGCT
Locus tag: Ssed_4340
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| Ssed_4340 | -41 | 6.3 | AGCGTACAGATGTACGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: OLE1 | ||||
| Ortholog function: Fatty acid desaturase (EC 1.14.19.1) | ||||
| Shewanella oneidensis MR-1 | SO_0197 | -42 | 6.3 | AGCTTACAGCTGTACGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_3542 | -43 | 6.2 | AGCTTACAGATGTACGCT |
| Shewanella sp W3-18-1 | Sputw3181_3679 | -43 | 6.2 | AGCTTACAGATGTACGCT |
| Shewanella sp ANA-3 | Shewana3_0177 | -21 | 6.2 | AGCTTACAGTTGTACGCT |
| Shewanella sp MR-4 | Shewmr4_0176 | -21 | 6.2 | AGCTTACAGTTGTACGCT |
| Shewanella sp MR-7 | Shewmr7_0171 | -21 | 6.2 | AGCTTACAGTTGTACGCT |
| Shewanella baltica OS155 | Sbal_4181 | -43 | 6.2 | AGCTTACAGATGTACGCT |
| Shewanella denitrificans OS217 | Sden_0229 | -41 | 6.2 | AGCTTACAGATGTACGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0123 | -53 | 6.2 | AGCGTACAATTGTACGCT |
| Shewanella amazonensis SB2B | Sama_0191 | -29 | 6.3 | AGCTTACAGCTGTACGCT |
| Shewanella loihica PV-4 | Shew_0136 | -43 | 6 | GGCTTACAGCTGTACGCT |
| Shewanella pealeana ATCC 700345 | Spea_0162 | -9 | 6 | GGCGTACAGATGTACGCT |
| Shewanella halifaxensis HAW-EB4 | Shal_4156 | -40 | 6.3 | AGCGTACAGATGTACGCT |
| Shewanella piezotolerans WP3 | swp_0204 | -40 | 6.4 | AGCGTACAGCTGTACGCT |
| Shewanella sediminis HAW-EB3 | Ssed_4340 | -41 | 6.3 | AGCGTACAGATGTACGCT |
| Shewanella woodyi ATCC 51908 | Swoo_4712 | -41 | 6.3 | AGCGTACAGATGTACGCT |
|
Position: -34
Score: 4.8 Sequence: GAGGAACACCTGTACGCT
Locus tag: Ssed_4459
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| Ssed_4459 | -34 | 4.8 | GAGGAACACCTGTACGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lcfE | ||||
| Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Shewanella oneidensis MR-1 | SO_0075 | -121 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella putrefaciens CN-32 | Sputcn32_0061 | -35 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella sp W3-18-1 | Sputw3181_4017 | -35 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella sp ANA-3 | Shewana3_0080 | -34 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella sp MR-4 | Shewmr4_0078 | -34 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella sp MR-7 | Shewmr7_0076 | -34 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella baltica OS155 | Sbal_4274 | -34 | 4.8 | GCGGTACACTTGTAAGCT |
| Shewanella denitrificans OS217 | Sden_0072 | -32 | 4.6 | CAGGTACAAGTGTAAGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3973 | -34 | 4.6 | GCGGAACACTTGTAAGCT |
| Shewanella amazonensis SB2B | Sama_3571 | -59 | 4.6 | GAGGAACACTTGTAAGCT |
| Shewanella loihica PV-4 | Shew_3776 | -35 | 4.7 | CAGGTACAAGTGTACGCT |
| Shewanella pealeana ATCC 700345 | Spea_4186 | -34 | 4.6 | GCGGAACACTTGTAAGCT |
| Shewanella halifaxensis HAW-EB4 | Shal_0063 | -34 | 4.6 | GCGGAACACTTGTAAGCT |
| Shewanella piezotolerans WP3 | swp_0114 | -121 | 4.6 | GCGGAACACTTGTAAGCT |
| Shewanella sediminis HAW-EB3 | Ssed_4459 | -34 | 4.8 | GAGGAACACCTGTACGCT |
| Shewanella woodyi ATCC 51908 | Swoo_4860 | -34 | 5 | GAGGTACACCTGTACGCT |