Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SO3627 regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: SO3627 - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process:
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_4177
Regulated genes 2
Built upon 4 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -96
Score: 7
Sequence: TTTTTGTGGTGTACCTCAAGAA
Locus tag: Ssed_4177
Ssed_4177 -96 7 TTTTTGTGGTGTACCTCAAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3627
Ortholog function: Transcriptional regulator, TetR family
Shewanella oneidensis MR-1 SO_3627 -99 6.9 TTTTTGAGTTGTATCTCAAGAA
Shewanella sediminis HAW-EB3 Ssed_4177 -96 7 TTTTTGTGGTGTACCTCAAGAA
Position: -113
Score: 7
Sequence: TTCTTGAGGTACACCACAAAAA
Locus tag: Ssed_4178
Ssed_4178 -113 7 TTCTTGAGGTACACCACAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3624
Ortholog function: Flavocytochrome c flavin subunit
Shewanella oneidensis MR-1 SO_3624 -1477 6.9 TTCTTGAGaTACAaCTCAAAAA
Shewanella sediminis HAW-EB3 Ssed_4178 -113 7 TTCTTGAGGTACACCACAAAAA
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