Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of GcvA regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: GcvA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_3322
Regulated genes 6
Built upon 108 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -148
Score: 4.7
Sequence: ATTAGTTTTATTCAT
Locus tag: Ssed_0101
Ssed_0101 -148 4.7 ATTAGTTTTATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kbl
Ortholog function: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
Shewanella oneidensis MR-1 SO_4674 -148 5 ATTAGTTTTTATAAT
Shewanella putrefaciens CN-32 Sputcn32_3901 -148 5 ATTAGTTTTTATAAT
Shewanella sp W3-18-1 Sputw3181_0050 -148 5 ATTAGTTTTTATAAT
Shewanella sp ANA-3 Shewana3_4104 -148 5 ATTAGTTTTTATAAT
Shewanella sp MR-4 Shewmr4_3900 -148 5 ATTAGTTTTTATAAT
Shewanella sp MR-7 Shewmr7_3992 -148 5 ATTAGTTTTTATAAT
Shewanella baltica OS155 Sbal_0058 -148 5 ATTAGTTTTTATAAT
Shewanella denitrificans OS217 Sden_3615 -140 5.7 ATTAGAATTTCTAAT
Shewanella frigidimarina NCIMB 400 Sfri_3938 -191 5 ATTAGTTTTTTTAAT
Shewanella amazonensis SB2B Sama_0098 -150 4.6 ATTAGTTTTTTTTAT
Shewanella pealeana ATCC 700345 Spea_0107 -147 5.6 ATTAGTTTAACTAAT
Shewanella halifaxensis HAW-EB4 Shal_4215 -147 5.2 ATTAGTTTAGCTAAT
Shewanella piezotolerans WP3 swp_5067 -148 5.6 ATTAGTTTAACTAAT
Shewanella sediminis HAW-EB3 Ssed_0101 -148 4.7 ATTAGTTTTATTCAT
Shewanella woodyi ATCC 51908 Swoo_0065 -148 4.6 ATTAGTTTTTTTTAT
Position: -97
Score: 5.1
Sequence: ATTAAAATATCTAAT
Locus tag: Ssed_1246
Ssed_1246 -97 5.1 ATTAAAATATCTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3342
Ortholog function: putative membrane protein
Shewanella oneidensis MR-1 SO_3342 -99 5.1 ATTATATATTCTAAT
Shewanella putrefaciens CN-32 Sputcn32_2677 -85 5 ATTATTTTTTCTAAT
Shewanella sp W3-18-1 Sputw3181_1334 -85 5 ATTATTTTTTCTAAT
Shewanella sp ANA-3 Shewana3_1204 -99 4.8 ATGAAATATTCTAAT
-77 4.2 TTTAAATAATCTCAT
Shewanella sp MR-4 Shewmr4_1203 -99 5.1 ATTAAATATTCTAAT
-77 4.2 TTTAAATAATCTCAT
Shewanella sp MR-7 Shewmr7_1274 -99 5.1 ATTAAATATTCTAAT
-77 4.2 TTTAAATAATCTCAT
Shewanella baltica OS155 Sbal_3015 -97 5 ATTAATTTTTCTAAT
Shewanella frigidimarina NCIMB 400 Sfri_0596 -171 4.3 ATTATTAAAACTATT
-96 5 ATTAGATTAATTAAT
Shewanella amazonensis SB2B Sama_2463 -113 4.6 ATAATAAAAACTAAT
Shewanella loihica PV-4 Shew_1154 -97 5.1 ATTAAAAAATCTAAT
Shewanella pealeana ATCC 700345 Spea_1141 -96 5.1 ATTAGAAAATGTAAT
Shewanella halifaxensis HAW-EB4 Shal_1186 -96 5.1 ATTAGAAAATATAAT
Shewanella piezotolerans WP3 swp_1289 -95 5 ATTAGTTTTTTTAAT
Shewanella sediminis HAW-EB3 Ssed_1246 -97 5.1 ATTAAAATATCTAAT
Shewanella woodyi ATCC 51908 Swoo_1346 -173 4.6 ATTAGCTAAACTAAA
-98 5.6 ATTAGAAAAACTAAT
Position: -278
Score: 5.2
Sequence: ATTAGTTTTTCTTAT
Locus tag: Ssed_1852
Ssed_1852 -278 5.2 ATTAGTTTTTCTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: Prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1 SO_2753 -256 5.2 ATTAGCTAAACTAAT
Shewanella putrefaciens CN-32 Sputcn32_1602 -255 5.3 ATTAGCAAATCTAAT
Shewanella sp W3-18-1 Sputw3181_2420 -255 5.3 ATTAGCAAATCTAAT
Shewanella sp ANA-3 Shewana3_2536 -255 5.2 ATTAGCAAAACTAAT
Shewanella sp MR-4 Shewmr4_2373 -255 5.2 ATTAGCAAAACTAAT
Shewanella sp MR-7 Shewmr7_2445 -255 5.2 ATTAGCAAAACTAAT
Shewanella baltica OS155 Sbal_1741 -254 5.6 ATTAGTAATTCTAAT
Shewanella amazonensis SB2B Sama_2091 -247 5.6 ATTAGTTTAACTAAT
Shewanella loihica PV-4 Shew_1522 -336 5.6 ATTAGtaTtTCTAAT
Shewanella pealeana ATCC 700345 Spea_2569 -79 5.3 ATAAGATTATCTAAT
Shewanella halifaxensis HAW-EB4 Shal_1686 -84 5.1 ATAAGATTATCTCAT
Shewanella piezotolerans WP3 swp_1825 -310 5.6 ATTAGtTTtaCTAAT
Shewanella sediminis HAW-EB3 Ssed_1852 -278 5.2 ATTAGTTTTTCTTAT
Shewanella woodyi ATCC 51908 Swoo_2736 -280 5.6 ATTAGTTTATCTAAT
Position: -187
Score: 4.8
Sequence: ATTAAAAAATCTCAT
Position: -117
Score: 4
Sequence: ATTAGATTATCATAC
Locus tag: Ssed_2838
Ssed_2838 -187 4.8 ATTAAAAAATCTCAT
-117 4 ATTAGATTATCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdaA
Ortholog function: L-serine dehydratase 1 (EC 4.3.1.17)
Shewanella oneidensis MR-1 SO_2248 -199 4.4 ATCAAAAAAACTAAT
Shewanella putrefaciens CN-32 Sputcn32_2171 -202 4.4 ATCAAAAAAACTAAT
Shewanella sp W3-18-1 Sputw3181_1837 -202 4.4 ATCAAAAAAACTAAT
Shewanella sp ANA-3 Shewana3_2295 -199 4.4 ATCAAAAAAACTAAT
Shewanella sp MR-4 Shewmr4_1725 -199 4.4 ATCAAAAAAACTAAT
Shewanella sp MR-7 Shewmr7_1804 -199 4.4 ATCAAAAAAACTAAT
Shewanella baltica OS155 Sbal_2417 -197 4.4 ATTTAAAAAACTAAT
Shewanella denitrificans OS217 Sden_1946 -208 5.2 ATAAGAAAAACTAAT
Shewanella frigidimarina NCIMB 400 Sfri_2402 -140 4.5 ATCAAAAAATCTAAT
Shewanella amazonensis SB2B Sama_1325 -189 4.6 ATAAAAATAACTAAT
Shewanella loihica PV-4 Shew_1625 -184 4.1 TTGAAAAAAACTAAT
Shewanella pealeana ATCC 700345 Spea_1538 -232 5.7 ATTAGATTATCTAAT
Shewanella halifaxensis HAW-EB4 Shal_1608 -244 5.3 ATTAGCTTATCTAAT
Shewanella piezotolerans WP3 swp_1748 -246 5.6 ATTAGTTTATCTAAT
Shewanella sediminis HAW-EB3 Ssed_2838 -187 4.8 ATTAAAAAATCTCAT
Shewanella woodyi ATCC 51908 Swoo_1806 -206 4.7 CTTAGCTTATCTAAT
-179 4.8 ATTAAAAAAACTCAT
Position: -38
Score: 5.6
Sequence: ATTAGAAAAACTAAT
Locus tag: Ssed_3322
Ssed_3322 -38 5.6 ATTAGAAAAACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gcvA
Ortholog function: Glycine cleavage system transcriptional activator GcvA
Shewanella oneidensis MR-1 SO_1533 -38 5.6 ATTAGAAAAACTAAT
Shewanella putrefaciens CN-32 Sputcn32_1282 -38 5.6 ATTAGAAAAACTAAT
Shewanella sp W3-18-1 Sputw3181_2824 -38 5.6 ATTAGAAAAACTAAT
Shewanella sp ANA-3 Shewana3_2894 -38 5.6 ATTAGAAAAACTAAT
Shewanella sp MR-4 Shewmr4_2724 -38 5.6 ATTAGAAAAACTAAT
Shewanella sp MR-7 Shewmr7_2795 -38 5.6 ATTAGAAAAACTAAT
Shewanella baltica OS155 Sbal_1364 -38 5.6 ATTAGAAAAACTAAT
Shewanella denitrificans OS217 Sden_2565 -54 5.2 ATTAGAAAAACTTAT
Shewanella frigidimarina NCIMB 400 Sfri_2783 -38 5.6 ATTAGAAAAACTAAT
Shewanella amazonensis SB2B Sama_2429 -38 5.6 ATTAGAAAAACTAAT
Shewanella loihica PV-4 Shew_2764 -38 5.6 ATTAGAAAAACTAAT
Shewanella pealeana ATCC 700345 Spea_2984 -38 5.6 ATTAGAAAAACTAAT
Shewanella halifaxensis HAW-EB4 Shal_3073 -38 5.6 ATTAGAAAAACTAAT
Shewanella piezotolerans WP3 swp_3612 -38 5.6 ATTAGAAAAACTAAT
Shewanella sediminis HAW-EB3 Ssed_3322 -38 5.6 ATTAGAAAAACTAAT
Shewanella woodyi ATCC 51908 Swoo_3471 -38 5.6 ATTAGAAAAACTAAT
Position: -213
Score: 4.8
Sequence: ATGAGAAAAAGTAAT
Locus tag: Ssed_3675
Ssed_3675 -213 4.8 ATGAGAAAAAGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gcvT
Ortholog function: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Shewanella oneidensis MR-1 SO_0779 -296 5.5 ATGAGAAAATCTAAT
Shewanella putrefaciens CN-32 Sputcn32_3211 -152 5.5 ATGAGAAAATCTAAT
Shewanella sp W3-18-1 Sputw3181_0730 -152 5.5 ATGAGAAAATCTAAT
Shewanella sp ANA-3 Shewana3_3501 -296 5.5 ATGAGAAAATCTAAT
Shewanella sp MR-4 Shewmr4_3331 -298 5.5 ATGAGAAAATCTAAT
Shewanella sp MR-7 Shewmr7_0622 -297 5.5 ATGAGAAAATCTAAT
Shewanella baltica OS155 Sbal_0617 -348 5.5 ATGAGAAAATCTAAT
Shewanella denitrificans OS217 Sden_0833 -142 5.6 ATTAGTAAAACTAAT
Shewanella frigidimarina NCIMB 400 Sfri_3151 -131 5.2 ATTAGCTAAACTAAT
Shewanella amazonensis SB2B Sama_2721 -141 5.2 ATAAGAAAAACTAAT
Shewanella loihica PV-4 Shew_3064 -371 4.8 ATGAGAAAAAGTAAT
Shewanella pealeana ATCC 700345 Spea_3303 -233 5.4 ATGAGAAAAACTAAT
Shewanella halifaxensis HAW-EB4 Shal_3375 -213 5.4 ATGAGAAAAACTAAT
Shewanella piezotolerans WP3 swp_0913 -163 5.4 ATGAGAAAAACTAAT
Shewanella sediminis HAW-EB3 Ssed_3675 -213 4.8 ATGAGAAAAAGTAAT
Shewanella woodyi ATCC 51908 Swoo_3969 -229 4.8 ATGAGAAAAAGTAAT
© 2009-2020 RegPrecise