Propagation of NsrR regulog to Shewanella sediminis HAW-EB3
| Source regulog: | NsrR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella sediminis HAW-EB3 |
| Orthologous TF(s) | Ssed_4474 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -42
Score: 5.4 Sequence: ACATGCAAATAAAAAGCATGA
Locus tag: Ssed_1165
|
||||
| Ssed_1165 | -42 | 5.4 | ACATGCAAATAAAAAGCATGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Shewanella oneidensis MR-1 | SO_1363 | -42 | 5.2 | ACATGTAAAAATAAAGCATGA |
| Shewanella putrefaciens CN-32 | Sputcn32_1174 | -42 | 5.5 | ACATGCATAAATAAAGCATGA |
| Shewanella sp W3-18-1 | Sputw3181_2990 | -42 | 5.5 | ACATGCATAAATAAAGCATGA |
| Shewanella sp ANA-3 | Shewana3_3011 | -42 | 5.4 | ACATGCAAAAATAAAGCATGA |
| Shewanella sp MR-4 | Shewmr4_2832 | -42 | 5.4 | ACATGCAAAAATAAAGCATGA |
| Shewanella sp MR-7 | Shewmr7_2914 | -42 | 5.4 | ACATGCAAAAATAAAGCATGA |
| Shewanella baltica OS155 | Sbal_1216 | -42 | 5.2 | ACATGTAAAAATAAAGCATGA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3609 | -43 | 5 | ACATGTAAAACTTATACATGA |
| Shewanella amazonensis SB2B | Sama_0895 | -83 | 4.5 | TGCTGCTTTTTAAATGCAGCA |
| -40 | 5.5 | ACATGCATAAATAAAGCATGA | ||
| Shewanella loihica PV-4 | Shew_1069 | -41 | 5.1 | ACGTGCAAATAAAAAGCATGA |
| Shewanella pealeana ATCC 700345 | Spea_1055 | -43 | 5.6 | ACATGTAAATAATATGCATGA |
| Shewanella halifaxensis HAW-EB4 | Shal_1103 | -13 | 5.6 | ACATGTAAATAATATGCATGA |
| Shewanella piezotolerans WP3 | swp_3762 | 41 | 5.9 | AGATGCAAATTATATGCATGT |
| Shewanella sediminis HAW-EB3 | Ssed_1165 | -42 | 5.4 | ACATGCAAATAAAAAGCATGA |
| Shewanella woodyi ATCC 51908 | Swoo_1260 | -42 | 5.4 | ACATGCAAATAAAAAGCATGA |
|
Position: -13
Score: 4.5 Sequence: ACTTGCATCTTAAATGCACCT
Locus tag: Ssed_2876
|
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| Ssed_2876 | -13 | 4.5 | ACTTGCATCTTAAATGCACCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nnrS | ||||
| Ortholog function: NnrS protein involved in response to NO | ||||
| Shewanella oneidensis MR-1 | SO_2805 | -59 | 5.4 | ACATTCATTTAATTTGCAGCT |
| Shewanella sp ANA-3 | Shewana3_2587 | -58 | 5.4 | ACATTCATTTTATTTGCAGCT |
| Shewanella sp MR-4 | Shewmr4_2425 | -58 | 5.4 | ACATTCATTTTATTTGCAGCT |
| Shewanella sp MR-7 | Shewmr7_2495 | -58 | 5.4 | ACATTCATTTTATTTGCAGCT |
| Shewanella baltica OS155 | Sbal_1680 | -63 | 5.3 | ACATTCATTTTAATTGCAGCT |
| Shewanella amazonensis SB2B | Sama_1288 | -59 | 5.4 | ACATGCATATTTTAAGCACCT |
| Shewanella loihica PV-4 | Shew_2322 | -64 | 5.2 | ACATGCATATAAATTACACCT |
| Shewanella sediminis HAW-EB3 | Ssed_2876 | -13 | 4.5 | ACTTGCATCTTAAATGCACCT |
|
Position: -32
Score: 4.8 Sequence: AGATATAAATAATTTGCAGCT
Locus tag: Ssed_4124
|
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| Ssed_4124 | -32 | 4.8 | AGATATAAATAATTTGCAGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dnrN | ||||
| Ortholog function: Nitric oxide-dependent regulator DnrN or NorA | ||||
| Shewanella oneidensis MR-1 | SO_4302 | -126 | 5.6 | AGCTGCAAATAATATGCATGT |
| Shewanella putrefaciens CN-32 | Sputcn32_3576 | -49 | 5.5 | AGCTGCAAATAATATGAATGT |
| Shewanella sp W3-18-1 | Sputw3181_3715 | -49 | 5.5 | AGCTGCAAATAATATGAATGT |
| Shewanella sp ANA-3 | Shewana3_0397 | -49 | 5.6 | AGCTGCAAATATTATGCATGT |
| Shewanella sp MR-4 | Shewmr4_0398 | -49 | 5.6 | AGCTGCAAATATTATGCATGT |
| Shewanella sp MR-7 | Shewmr7_3627 | -49 | 5.6 | AGCTGCAAATATTATGCATGT |
| Shewanella baltica OS155 | Sbal_3989 | -48 | 5.7 | AGATGCAAATAATATGAATGT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0450 | -26 | 5.2 | AGATGCACATAAAATACATGT |
| Shewanella amazonensis SB2B | Sama_3236 | -34 | 4.6 | ACATGCATACAGATTGCAGCT |
| Shewanella pealeana ATCC 700345 | Spea_0383 | -60 | 5.9 | AGATGCAAATAATATGCATGT |
| Shewanella piezotolerans WP3 | swp_0412 | -46 | 5.1 | AGATGCAAATAATATACTTGT |
| Shewanella sediminis HAW-EB3 | Ssed_4124 | -32 | 4.8 | AGATATAAATAATTTGCAGCT |
| Shewanella woodyi ATCC 51908 | Swoo_0492 | -33 | 4.9 | ACATGCAAATACAAAGCAGCT |
|
Position: -169
Score: 5 Sequence: ACATGCAAAATCAATACAGGT
Locus tag: Ssed_4366
|
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| Ssed_4366 | -169 | 5 | ACATGCAAAATCAATACAGGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Ssed_4366 | ||||
| Ortholog function: hydroxylamine oxidoreductase | ||||
| Shewanella sediminis HAW-EB3 | Ssed_4366 | -169 | 5 | ACATGCAAAATCAATACAGGT |
| Shewanella woodyi ATCC 51908 | Swoo_4755 | -139 | 5 | ACATGCGAAAAATATACAGGT |