Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NsrR regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: NsrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_4474
Regulated genes 4
Built upon 51 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -42
Score: 5.4
Sequence: ACATGCAAATAAAAAGCATGA
Locus tag: Ssed_1165
Ssed_1165 -42 5.4 ACATGCAAATAAAAAGCATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella oneidensis MR-1 SO_1363 -42 5.2 ACATGTAAAAATAAAGCATGA
Shewanella putrefaciens CN-32 Sputcn32_1174 -42 5.5 ACATGCATAAATAAAGCATGA
Shewanella sp W3-18-1 Sputw3181_2990 -42 5.5 ACATGCATAAATAAAGCATGA
Shewanella sp ANA-3 Shewana3_3011 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella sp MR-4 Shewmr4_2832 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella sp MR-7 Shewmr7_2914 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella baltica OS155 Sbal_1216 -42 5.2 ACATGTAAAAATAAAGCATGA
Shewanella frigidimarina NCIMB 400 Sfri_3609 -43 5 ACATGTAAAACTTATACATGA
Shewanella amazonensis SB2B Sama_0895 -83 4.5 TGCTGCTTTTTAAATGCAGCA
-40 5.5 ACATGCATAAATAAAGCATGA
Shewanella loihica PV-4 Shew_1069 -41 5.1 ACGTGCAAATAAAAAGCATGA
Shewanella pealeana ATCC 700345 Spea_1055 -43 5.6 ACATGTAAATAATATGCATGA
Shewanella halifaxensis HAW-EB4 Shal_1103 -13 5.6 ACATGTAAATAATATGCATGA
Shewanella piezotolerans WP3 swp_3762 41 5.9 AGATGCAAATTATATGCATGT
Shewanella sediminis HAW-EB3 Ssed_1165 -42 5.4 ACATGCAAATAAAAAGCATGA
Shewanella woodyi ATCC 51908 Swoo_1260 -42 5.4 ACATGCAAATAAAAAGCATGA
Position: -13
Score: 4.5
Sequence: ACTTGCATCTTAAATGCACCT
Locus tag: Ssed_2876
Ssed_2876 -13 4.5 ACTTGCATCTTAAATGCACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nnrS
Ortholog function: NnrS protein involved in response to NO
Shewanella oneidensis MR-1 SO_2805 -59 5.4 ACATTCATTTAATTTGCAGCT
Shewanella sp ANA-3 Shewana3_2587 -58 5.4 ACATTCATTTTATTTGCAGCT
Shewanella sp MR-4 Shewmr4_2425 -58 5.4 ACATTCATTTTATTTGCAGCT
Shewanella sp MR-7 Shewmr7_2495 -58 5.4 ACATTCATTTTATTTGCAGCT
Shewanella baltica OS155 Sbal_1680 -63 5.3 ACATTCATTTTAATTGCAGCT
Shewanella amazonensis SB2B Sama_1288 -59 5.4 ACATGCATATTTTAAGCACCT
Shewanella loihica PV-4 Shew_2322 -64 5.2 ACATGCATATAAATTACACCT
Shewanella sediminis HAW-EB3 Ssed_2876 -13 4.5 ACTTGCATCTTAAATGCACCT
Position: -32
Score: 4.8
Sequence: AGATATAAATAATTTGCAGCT
Locus tag: Ssed_4124
Ssed_4124 -32 4.8 AGATATAAATAATTTGCAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN or NorA
Shewanella oneidensis MR-1 SO_4302 -126 5.6 AGCTGCAAATAATATGCATGT
Shewanella putrefaciens CN-32 Sputcn32_3576 -49 5.5 AGCTGCAAATAATATGAATGT
Shewanella sp W3-18-1 Sputw3181_3715 -49 5.5 AGCTGCAAATAATATGAATGT
Shewanella sp ANA-3 Shewana3_0397 -49 5.6 AGCTGCAAATATTATGCATGT
Shewanella sp MR-4 Shewmr4_0398 -49 5.6 AGCTGCAAATATTATGCATGT
Shewanella sp MR-7 Shewmr7_3627 -49 5.6 AGCTGCAAATATTATGCATGT
Shewanella baltica OS155 Sbal_3989 -48 5.7 AGATGCAAATAATATGAATGT
Shewanella frigidimarina NCIMB 400 Sfri_0450 -26 5.2 AGATGCACATAAAATACATGT
Shewanella amazonensis SB2B Sama_3236 -34 4.6 ACATGCATACAGATTGCAGCT
Shewanella pealeana ATCC 700345 Spea_0383 -60 5.9 AGATGCAAATAATATGCATGT
Shewanella piezotolerans WP3 swp_0412 -46 5.1 AGATGCAAATAATATACTTGT
Shewanella sediminis HAW-EB3 Ssed_4124 -32 4.8 AGATATAAATAATTTGCAGCT
Shewanella woodyi ATCC 51908 Swoo_0492 -33 4.9 ACATGCAAATACAAAGCAGCT
Position: -169
Score: 5
Sequence: ACATGCAAAATCAATACAGGT
Locus tag: Ssed_4366
Ssed_4366 -169 5 ACATGCAAAATCAATACAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Ssed_4366
Ortholog function: hydroxylamine oxidoreductase
Shewanella sediminis HAW-EB3 Ssed_4366 -169 5 ACATGCAAAATCAATACAGGT
Shewanella woodyi ATCC 51908 Swoo_4755 -139 5 ACATGCGAAAAATATACAGGT
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