Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of BirA regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: BirA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_4334
Regulated genes 2
Built upon 32 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -99
Score: 8
Sequence: TAGTAAACC-(15)-CGTTGACAG
Locus tag: Ssed_2776
Ssed_2776 -99 8 TAGTAAACC-(15)-CGTTGACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: bioB
Ortholog function: Biotin synthase (EC 2.8.1.6)
Shewanella oneidensis MR-1 SO_2740 -89 7.8 TGGTAAACC-(15)-CGTTGACAG
Shewanella putrefaciens CN-32 Sputcn32_2345 -90 7.5 TAGTAAACT-(15)-CGTTGACAG
Shewanella sp W3-18-1 Sputw3181_1663 -90 7.5 TAGTAAACT-(15)-CGTTGACAG
Shewanella sp ANA-3 Shewana3_2519 -89 7.8 TGGTAAACC-(15)-CGTTGACAG
Shewanella sp MR-4 Shewmr4_2359 -89 7.8 TGGTAAACC-(15)-CGTTGACAG
Shewanella sp MR-7 Shewmr7_2431 -89 7.8 TGGTAAACC-(15)-CGTTGACAG
Shewanella baltica OS155 Sbal_1758 -89 7.5 TAGTAAACT-(15)-CGTTGACAG
Shewanella denitrificans OS217 Sden_1658 -86 6.8 TaGTcAAgt-(15)-cGTTgACAg
Shewanella frigidimarina NCIMB 400 Sfri_1475 -87 7.3 TAGTAAAGC-(15)-CGTTGACAG
Shewanella amazonensis SB2B Sama_1438 -86 7.8 CAGTAAACC-(15)-CGTTGACAG
Shewanella loihica PV-4 Shew_1719 -122 8 TAGTAAACC-(15)-CGTTGACAG
Shewanella pealeana ATCC 700345 Spea_1801 -238 7.3 TAGTAAACC-(15)-CATTGACAG
Shewanella halifaxensis HAW-EB4 Shal_2477 -236 7.3 TAGTAAACC-(15)-CATTGACAG
Shewanella piezotolerans WP3 swp_2928 -242 7.3 TAGTAAACC-(15)-CATTGACAG
Shewanella sediminis HAW-EB3 Ssed_2776 -99 8 TAGTAAACC-(15)-CGTTGACAG
Shewanella woodyi ATCC 51908 Swoo_1866 -99 8 TAGTAAACC-(15)-CGTTGACAG
Position: -44
Score: 8
Sequence: CTGTCAACG-(15)-GGTTTACTA
Locus tag: Ssed_2777
Ssed_2777 -44 8 CTGTCAACG-(15)-GGTTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bioA
Ortholog function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
Shewanella oneidensis MR-1 SO_2741 -66 7.8 CTGTCAACG-(15)-GGTTTACCA
Shewanella putrefaciens CN-32 Sputcn32_2346 -66 7.5 CTGTCAACG-(15)-AGTTTACTA
Shewanella sp W3-18-1 Sputw3181_1662 -66 7.5 CTGTCAACG-(15)-AGTTTACTA
Shewanella sp ANA-3 Shewana3_2520 -66 7.8 CTGTCAACG-(15)-GGTTTACCA
Shewanella sp MR-4 Shewmr4_2360 -66 7.8 CTGTCAACG-(15)-GGTTTACCA
Shewanella sp MR-7 Shewmr7_2432 -66 7.8 CTGTCAACG-(15)-GGTTTACCA
Shewanella baltica OS155 Sbal_1757 -66 7.5 CTGTCAACG-(15)-AGTTTACTA
Shewanella denitrificans OS217 Sden_1657 -43 6.8 cTGTcAACg-(15)-acTTgACtA
Shewanella frigidimarina NCIMB 400 Sfri_1474 -60 7.3 CTGTCAACG-(15)-GCTTTACTA
Shewanella amazonensis SB2B Sama_1437 -57 7.8 CTGTCAACG-(15)-GGTTTACTG
Shewanella loihica PV-4 Shew_1718 -60 8 CTGTCAACG-(15)-GGTTTACTA
Shewanella pealeana ATCC 700345 Spea_1800 -44 7.3 CTGTCAATG-(15)-GGTTTACTA
Shewanella halifaxensis HAW-EB4 Shal_2478 -44 7.3 CTGTCAATG-(15)-GGTTTACTA
Shewanella piezotolerans WP3 swp_2929 -44 7.3 CTGTCAATG-(15)-GGTTTACTA
Shewanella sediminis HAW-EB3 Ssed_2777 -44 8 CTGTCAACG-(15)-GGTTTACTA
Shewanella woodyi ATCC 51908 Swoo_1865 -44 8 CTGTCAACG-(15)-GGTTTACTA
© 2009-2020 RegPrecise