Propagation of BirA regulog to Shewanella sediminis HAW-EB3
| Source regulog: | BirA - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella sediminis HAW-EB3 |
| Orthologous TF(s) | Ssed_4334 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -99
Score: 8 Sequence: TAGTAAACC-(15)-CGTTGACAG
Locus tag: Ssed_2776
|
||||
| Ssed_2776 | -99 | 8 | TAGTAAACC-(15)-CGTTGACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bioB | ||||
| Ortholog function: Biotin synthase (EC 2.8.1.6) | ||||
| Shewanella oneidensis MR-1 | SO_2740 | -89 | 7.8 | TGGTAAACC-(15)-CGTTGACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_2345 | -90 | 7.5 | TAGTAAACT-(15)-CGTTGACAG |
| Shewanella sp W3-18-1 | Sputw3181_1663 | -90 | 7.5 | TAGTAAACT-(15)-CGTTGACAG |
| Shewanella sp ANA-3 | Shewana3_2519 | -89 | 7.8 | TGGTAAACC-(15)-CGTTGACAG |
| Shewanella sp MR-4 | Shewmr4_2359 | -89 | 7.8 | TGGTAAACC-(15)-CGTTGACAG |
| Shewanella sp MR-7 | Shewmr7_2431 | -89 | 7.8 | TGGTAAACC-(15)-CGTTGACAG |
| Shewanella baltica OS155 | Sbal_1758 | -89 | 7.5 | TAGTAAACT-(15)-CGTTGACAG |
| Shewanella denitrificans OS217 | Sden_1658 | -86 | 6.8 | TaGTcAAgt-(15)-cGTTgACAg |
| Shewanella frigidimarina NCIMB 400 | Sfri_1475 | -87 | 7.3 | TAGTAAAGC-(15)-CGTTGACAG |
| Shewanella amazonensis SB2B | Sama_1438 | -86 | 7.8 | CAGTAAACC-(15)-CGTTGACAG |
| Shewanella loihica PV-4 | Shew_1719 | -122 | 8 | TAGTAAACC-(15)-CGTTGACAG |
| Shewanella pealeana ATCC 700345 | Spea_1801 | -238 | 7.3 | TAGTAAACC-(15)-CATTGACAG |
| Shewanella halifaxensis HAW-EB4 | Shal_2477 | -236 | 7.3 | TAGTAAACC-(15)-CATTGACAG |
| Shewanella piezotolerans WP3 | swp_2928 | -242 | 7.3 | TAGTAAACC-(15)-CATTGACAG |
| Shewanella sediminis HAW-EB3 | Ssed_2776 | -99 | 8 | TAGTAAACC-(15)-CGTTGACAG |
| Shewanella woodyi ATCC 51908 | Swoo_1866 | -99 | 8 | TAGTAAACC-(15)-CGTTGACAG |
|
Position: -44
Score: 8 Sequence: CTGTCAACG-(15)-GGTTTACTA
Locus tag: Ssed_2777
|
||||
| Ssed_2777 | -44 | 8 | CTGTCAACG-(15)-GGTTTACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bioA | ||||
| Ortholog function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) | ||||
| Shewanella oneidensis MR-1 | SO_2741 | -66 | 7.8 | CTGTCAACG-(15)-GGTTTACCA |
| Shewanella putrefaciens CN-32 | Sputcn32_2346 | -66 | 7.5 | CTGTCAACG-(15)-AGTTTACTA |
| Shewanella sp W3-18-1 | Sputw3181_1662 | -66 | 7.5 | CTGTCAACG-(15)-AGTTTACTA |
| Shewanella sp ANA-3 | Shewana3_2520 | -66 | 7.8 | CTGTCAACG-(15)-GGTTTACCA |
| Shewanella sp MR-4 | Shewmr4_2360 | -66 | 7.8 | CTGTCAACG-(15)-GGTTTACCA |
| Shewanella sp MR-7 | Shewmr7_2432 | -66 | 7.8 | CTGTCAACG-(15)-GGTTTACCA |
| Shewanella baltica OS155 | Sbal_1757 | -66 | 7.5 | CTGTCAACG-(15)-AGTTTACTA |
| Shewanella denitrificans OS217 | Sden_1657 | -43 | 6.8 | cTGTcAACg-(15)-acTTgACtA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1474 | -60 | 7.3 | CTGTCAACG-(15)-GCTTTACTA |
| Shewanella amazonensis SB2B | Sama_1437 | -57 | 7.8 | CTGTCAACG-(15)-GGTTTACTG |
| Shewanella loihica PV-4 | Shew_1718 | -60 | 8 | CTGTCAACG-(15)-GGTTTACTA |
| Shewanella pealeana ATCC 700345 | Spea_1800 | -44 | 7.3 | CTGTCAATG-(15)-GGTTTACTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2478 | -44 | 7.3 | CTGTCAATG-(15)-GGTTTACTA |
| Shewanella piezotolerans WP3 | swp_2929 | -44 | 7.3 | CTGTCAATG-(15)-GGTTTACTA |
| Shewanella sediminis HAW-EB3 | Ssed_2777 | -44 | 8 | CTGTCAACG-(15)-GGTTTACTA |
| Shewanella woodyi ATCC 51908 | Swoo_1865 | -44 | 8 | CTGTCAACG-(15)-GGTTTACTA |