Regulog BirA - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	BirA
Regulation mode:	repressor
Biological process:	Biotin biosynthesis
Effector:	Biotin
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 32 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - BirA
By TF family - BirA
By effector - Biotin
By pathway - Biotin biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	2	2
Shewanella putrefaciens CN-32	5	2
Shewanella sp W3-18-1	5	2
Shewanella sp ANA-3	5	2
Shewanella sp MR-4	5	2
Shewanella sp MR-7	5	2
Shewanella baltica OS155	5	2
Shewanella denitrificans OS217	5	2
Shewanella frigidimarina NCIMB 400	5	2
Shewanella amazonensis SB2B	5	2
Shewanella loihica PV-4	5	2
Shewanella pealeana ATCC 700345	5	2
Shewanella halifaxensis HAW-EB4	5	2
Shewanella piezotolerans WP3	5	2
Shewanella sediminis HAW-EB3	5	2
Shewanella woodyi ATCC 51908	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
bioA	* Shewanella oneidensis MR-1 Site: position = -66 score = 7.84342 sequence = CTGTCAACG-(15)-GGTTTACCA Gene: SO_2741: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella putrefaciens CN-32 Site: position = -66 score = 7.52775 sequence = CTGTCAACG-(15)-AGTTTACTA Gene: Sputcn32_2346: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella sp W3-18-1 Site: position = -66 score = 7.52775 sequence = CTGTCAACG-(15)-AGTTTACTA Gene: Sputw3181_1662: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella sp ANA-3 Site: position = -66 score = 7.84342 sequence = CTGTCAACG-(15)-GGTTTACCA Gene: Shewana3_2520: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella sp MR-4 Site: position = -66 score = 7.84342 sequence = CTGTCAACG-(15)-GGTTTACCA Gene: Shewmr4_2360: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella sp MR-7 Site: position = -66 score = 7.84342 sequence = CTGTCAACG-(15)-GGTTTACCA Gene: Shewmr7_2432: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella baltica OS155 Site: position = -66 score = 7.52775 sequence = CTGTCAACG-(15)-AGTTTACTA Gene: Sbal_1757: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella denitrificans OS217 Site: position = -43 score = 6.75418 sequence = cTGTcAACg-(15)-acTTgACtA Gene: Sden_1657: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella frigidimarina NCIMB 400 Site: position = -60 score = 7.29355 sequence = CTGTCAACG-(15)-GCTTTACTA Gene: Sfri_1474: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella amazonensis SB2B Site: position = -57 score = 7.81242 sequence = CTGTCAACG-(15)-GGTTTACTG Gene: Sama_1437: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella loihica PV-4 Site: position = -60 score = 7.95601 sequence = CTGTCAACG-(15)-GGTTTACTA Gene: Shew_1718: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella pealeana ATCC 700345 Site: position = -44 score = 7.29355 sequence = CTGTCAATG-(15)-GGTTTACTA Gene: Spea_1800: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella halifaxensis HAW-EB4 Site: position = -44 score = 7.29355 sequence = CTGTCAATG-(15)-GGTTTACTA Gene: Shal_2478: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella piezotolerans WP3 Site: position = -44 score = 7.29355 sequence = CTGTCAATG-(15)-GGTTTACTA Gene: swp_2929: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella sediminis HAW-EB3 Site: position = -44 score = 7.95601 sequence = CTGTCAACG-(15)-GGTTTACTA Gene: Ssed_2777: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	* Shewanella woodyi ATCC 51908 Site: position = -44 score = 7.95601 sequence = CTGTCAACG-(15)-GGTTTACTA Gene: Swoo_1865: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)

CRON 2.
bioB	* Shewanella oneidensis MR-1 Site: position = -89 score = 7.84342 sequence = TGGTAAACC-(15)-CGTTGACAG Gene: SO_2740: Biotin synthase (EC 2.8.1.6)	* Shewanella putrefaciens CN-32 Site: position = -90 score = 7.52775 sequence = TAGTAAACT-(15)-CGTTGACAG Gene: Sputcn32_2345: Biotin synthase (EC 2.8.1.6)	* Shewanella sp W3-18-1 Site: position = -90 score = 7.52775 sequence = TAGTAAACT-(15)-CGTTGACAG Gene: Sputw3181_1663: Biotin synthase (EC 2.8.1.6)	* Shewanella sp ANA-3 Site: position = -89 score = 7.84342 sequence = TGGTAAACC-(15)-CGTTGACAG Gene: Shewana3_2519: Biotin synthase (EC 2.8.1.6)	* Shewanella sp MR-4 Site: position = -89 score = 7.84342 sequence = TGGTAAACC-(15)-CGTTGACAG Gene: Shewmr4_2359: Biotin synthase (EC 2.8.1.6)	* Shewanella sp MR-7 Site: position = -89 score = 7.84342 sequence = TGGTAAACC-(15)-CGTTGACAG Gene: Shewmr7_2431: Biotin synthase (EC 2.8.1.6)	* Shewanella baltica OS155 Site: position = -89 score = 7.52775 sequence = TAGTAAACT-(15)-CGTTGACAG Gene: Sbal_1758: Biotin synthase (EC 2.8.1.6)	* Shewanella denitrificans OS217 Site: position = -86 score = 6.75418 sequence = TaGTcAAgt-(15)-cGTTgACAg Gene: Sden_1658: Biotin synthase (EC 2.8.1.6)	* Shewanella frigidimarina NCIMB 400 Site: position = -87 score = 7.29355 sequence = TAGTAAAGC-(15)-CGTTGACAG Gene: Sfri_1475: Biotin synthase (EC 2.8.1.6)	* Shewanella amazonensis SB2B Site: position = -86 score = 7.81242 sequence = CAGTAAACC-(15)-CGTTGACAG Gene: Sama_1438: Biotin synthase (EC 2.8.1.6)	* Shewanella loihica PV-4 Site: position = -122 score = 7.95601 sequence = TAGTAAACC-(15)-CGTTGACAG Gene: Shew_1719: Biotin synthase (EC 2.8.1.6)	* Shewanella pealeana ATCC 700345 Site: position = -238 score = 7.29355 sequence = TAGTAAACC-(15)-CATTGACAG Gene: Spea_1801: Biotin synthase (EC 2.8.1.6)	* Shewanella halifaxensis HAW-EB4 Site: position = -236 score = 7.29355 sequence = TAGTAAACC-(15)-CATTGACAG Gene: Shal_2477: Biotin synthase (EC 2.8.1.6)	* Shewanella piezotolerans WP3 Site: position = -242 score = 7.29355 sequence = TAGTAAACC-(15)-CATTGACAG Gene: swp_2928: Biotin synthase (EC 2.8.1.6)	* Shewanella sediminis HAW-EB3 Site: position = -99 score = 7.95601 sequence = TAGTAAACC-(15)-CGTTGACAG Gene: Ssed_2776: Biotin synthase (EC 2.8.1.6)	* Shewanella woodyi ATCC 51908 Site: position = -99 score = 7.95601 sequence = TAGTAAACC-(15)-CGTTGACAG Gene: Swoo_1866: Biotin synthase (EC 2.8.1.6)	Biotin synthase (EC 2.8.1.6)
bioF	Shewanella oneidensis MR-1 Gene: SO_2739: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella putrefaciens CN-32 Gene: Sputcn32_2344: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella sp W3-18-1 Gene: Sputw3181_1664: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella sp ANA-3 Gene: Shewana3_2518: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella sp MR-4 Gene: Shewmr4_2358: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella sp MR-7 Gene: Shewmr7_2430: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella baltica OS155 Gene: Sbal_1759: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella denitrificans OS217 Gene: Sden_1659: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1476: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella amazonensis SB2B Gene: Sama_1439: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella loihica PV-4 Gene: Shew_1720: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella pealeana ATCC 700345 Gene: Spea_1802: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella halifaxensis HAW-EB4 Gene: Shal_2476: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella piezotolerans WP3 Gene: swp_2927: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella sediminis HAW-EB3 Gene: Ssed_2775: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Shewanella woodyi ATCC 51908 Gene: Swoo_1867: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioC	Shewanella oneidensis MR-1 Gene: SO_2738: Biotin synthesis protein bioC	Shewanella putrefaciens CN-32 Gene: Sputcn32_2343: Biotin synthesis protein bioC	Shewanella sp W3-18-1 Gene: Sputw3181_1665: Biotin synthesis protein bioC	Shewanella sp ANA-3 Gene: Shewana3_2517: Biotin synthesis protein bioC	Shewanella sp MR-4 Gene: Shewmr4_2357: Biotin synthesis protein bioC	Shewanella sp MR-7 Gene: Shewmr7_2429: Biotin synthesis protein bioC	Shewanella baltica OS155 Gene: Sbal_1760: Biotin synthesis protein bioC	Shewanella denitrificans OS217 Gene: Sden_1660: Biotin synthesis protein bioC	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1477: Biotin synthesis protein bioC	Shewanella amazonensis SB2B Gene: Sama_1440: Biotin synthesis protein bioC	Shewanella loihica PV-4 Gene: Shew_1721: Biotin synthesis protein bioC	Shewanella pealeana ATCC 700345 Gene: Spea_1803: Biotin synthesis protein bioC	Shewanella halifaxensis HAW-EB4 Gene: Shal_2475: Biotin synthesis protein bioC	Shewanella piezotolerans WP3 Gene: swp_2926: Biotin synthesis protein bioC	Shewanella sediminis HAW-EB3 Gene: Ssed_2774: Biotin synthesis protein bioC	Shewanella woodyi ATCC 51908 Gene: Swoo_1868: Biotin synthesis protein bioC	Biotin synthesis protein bioC
bioD	Shewanella oneidensis MR-1 Gene: SO_2737: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella putrefaciens CN-32 Gene: Sputcn32_2342: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella sp W3-18-1 Gene: Sputw3181_1666: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella sp ANA-3 Gene: Shewana3_2516: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella sp MR-4 Gene: Shewmr4_2356: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella sp MR-7 Gene: Shewmr7_2428: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella baltica OS155 Gene: Sbal_1761: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella denitrificans OS217 Gene: Sden_1661: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1478: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella amazonensis SB2B Gene: Sama_1441: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella loihica PV-4 Gene: Shew_1722: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella pealeana ATCC 700345 Gene: Spea_1804: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella halifaxensis HAW-EB4 Gene: Shal_2474: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella piezotolerans WP3 Gene: swp_2925: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella sediminis HAW-EB3 Gene: Ssed_2773: Dethiobiotin synthetase (EC 6.3.3.3)	Shewanella woodyi ATCC 51908 Gene: Swoo_1869: Dethiobiotin synthetase (EC 6.3.3.3)	Dethiobiotin synthetase (EC 6.3.3.3)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BirA - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --