Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of DeoR regulog to Shewanella sediminis HAW-EB3

Reference regulog properties
Source regulog: DeoR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nucleoside utilization
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sediminis HAW-EB3
Orthologous TF(s) Ssed_3273
Regulated genes 1
Built upon 9 sites [see more]
Predicted regulatory interactions in Shewanella sediminis HAW-EB3
Locus tag Position Score Sequence
Position: -93
Score: 5.8
Sequence: TGCGGACTTTTGTCCTAA
Locus tag: Ssed_3271
Ssed_3271 -93 5.8 TGCGGACTTTTGTCCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoD
Ortholog function: Purine nucleoside phosphorylase (EC 2.4.2.1)
Shewanella oneidensis MR-1 SO_2719 -73 6 TCCGGACTTTAGTCCTAA
Shewanella putrefaciens CN-32 Sputcn32_1657 -73 6 TCCGGACTTTAGTCCTAA
Shewanella sp W3-18-1 Sputw3181_2368 -73 6 TCCGGACTTTAGTCCTAA
Shewanella sp ANA-3 Shewana3_2503 -73 5.8 AGCGGACTTTAGTCCTAA
Shewanella pealeana ATCC 700345 Spea_3784 -72 5.5 TGCGGACTTATGTCCTCT
Shewanella halifaxensis HAW-EB4 Shal_3869 -72 5.5 TGCGGACTAATGTCCTCT
Shewanella piezotolerans WP3 swp_0461 -72 5.5 TGCGGACTTATGTCCTCT
Shewanella sediminis HAW-EB3 Ssed_3271 -93 5.8 TGCGGACTTTTGTCCTAA
Shewanella woodyi ATCC 51908 Swoo_3422 -116 5.3 TGCGGACTTTTGTCCTTA
© 2009-2020 RegPrecise