Regulog DeoR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nucleoside utilization |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - CRP
- By pathway - Nucleoside utilization
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 2 | 1 |
| Shewanella putrefaciens CN-32 | 2 | 1 |
| Shewanella sp W3-18-1 | 2 | 1 |
| Shewanella sp ANA-3 | 2 | 1 |
| Shewanella sp MR-4 | ||
| Shewanella sp MR-7 | ||
| Shewanella baltica OS155 | ||
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | ||
| Shewanella amazonensis SB2B | ||
| Shewanella loihica PV-4 | ||
| Shewanella pealeana ATCC 700345 | 2 | 1 |
| Shewanella halifaxensis HAW-EB4 | 2 | 1 |
| Shewanella piezotolerans WP3 | 2 | 1 |
| Shewanella sediminis HAW-EB3 | 2 | 1 |
| Shewanella woodyi ATCC 51908 | 2 | 1 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| deoD |
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Shewanella oneidensis MR-1 Site: position = -73 score = 5.9955 sequence = TCCGGACTTTAGTCCTAA Gene: SO_2719: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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Shewanella putrefaciens CN-32 Site: position = -73 score = 5.9955 sequence = TCCGGACTTTAGTCCTAA Gene: Sputcn32_1657: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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Shewanella sp W3-18-1 Site: position = -73 score = 5.9955 sequence = TCCGGACTTTAGTCCTAA Gene: Sputw3181_2368: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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Shewanella sp ANA-3 Site: position = -73 score = 5.77892 sequence = AGCGGACTTTAGTCCTAA Gene: Shewana3_2503: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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Shewanella pealeana ATCC 700345 Site: position = -72 score = 5.53649 sequence = TGCGGACTTATGTCCTCT Gene: Spea_3784: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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Shewanella halifaxensis HAW-EB4 Site: position = -72 score = 5.4797 sequence = TGCGGACTAATGTCCTCT Gene: Shal_3869: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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Shewanella piezotolerans WP3 Site: position = -72 score = 5.53649 sequence = TGCGGACTTATGTCCTCT Gene: swp_0461: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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Shewanella sediminis HAW-EB3 Site: position = -93 score = 5.77892 sequence = TGCGGACTTTTGTCCTAA Gene: Ssed_3271: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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Shewanella woodyi ATCC 51908 Site: position = -116 score = 5.34488 sequence = TGCGGACTTTTGTCCTTA Gene: Swoo_3422: Purine nucleoside phosphorylase (EC 2.4.2.1) |
Purine nucleoside phosphorylase (EC 2.4.2.1) |
| deoT |
Gene: SO_2718: Predicted purine nucleoside transporter, MFS superfamily |
Gene: Sputcn32_1658: Predicted purine nucleoside transporter, MFS superfamily |
Gene: Sputw3181_2367: Predicted purine nucleoside transporter, MFS superfamily |
Gene: Shewana3_2502: Predicted purine nucleoside transporter, MFS superfamily |
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Gene: Spea_3785: Predicted purine nucleoside transporter, MFS superfamily |
Gene: Shal_3870: Predicted purine nucleoside transporter, MFS superfamily |
Gene: swp_0460: Predicted purine nucleoside transporter, MFS superfamily |
Gene: Ssed_3272: Predicted purine nucleoside transporter, MFS superfamily |
Gene: Swoo_3423: Predicted purine nucleoside transporter, MFS superfamily |
Predicted purine nucleoside transporter, MFS superfamily |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |