Regulons of Pseudomonas syringae pv. tomato str. DC3000
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
BirA |
Biotin |
Biotin biosynthesis |
2 |
2 |
| TF |
CadR-PbrR |
Lead ion, (Pb2+); Cadmium, ion (Cd2+) |
Lead resistance; Cadmium resistance |
2 |
1 |
| TF |
CueR |
Copper ion, (Cu+) |
Copper resistance |
2 |
2 |
| TF |
DesT |
Unsaturated acyl-CoA; Unsaturated acyl-ACP |
Fatty acid biosynthesis |
1 |
1 |
| TF |
FruR |
Fructose-1-phosphate; Fructose-1,6-diphosphate |
Fructose utilization |
2 |
2 |
| TF |
GcvR |
Glycine |
Glycine metabolism |
1 |
3 |
| TF |
GguR |
|
Glucuronate utilization; Glucarate utilization; Galacturonate utilization; Galactarate utilization |
6 |
5 |
| TF |
GntR |
Gluconate |
Gluconate utilization |
3 |
5 |
| TF |
HexR |
2-keto-3-deoxy-6-phosphogluconate |
Central carbohydrate metabolism |
4 |
6 |
| TF |
HexR1 |
2-keto-3-deoxy-6-phosphogluconate |
Central carbohydrate metabolism |
4 |
3 |
| TF |
HmgR |
Homogentisate |
Tyrosine degradation |
3 |
3 |
| TF |
HpxS |
|
Allantoin utilization |
1 |
1 |
| TF |
HutC |
cis-Urocanic acid |
Histidine utilization |
3 |
4 |
| TF |
IscR |
Iron-sulfur cluster redox state |
Iron-sulfur cluster biogenesis |
2 |
2 |
| TF |
LexA |
DNA damage |
SOS response |
18 |
12 |
| TF |
LexA2 |
DNA damage |
SOS response |
1 |
1 |
| TF |
LiuR |
|
Branched-chain amino acid degradation |
2 |
2 |
| TF |
MetR |
Homocysteine |
Methionine biosynthesis |
4 |
3 |
| TF |
ModE |
Molybdate |
Molybdenum homeostasis |
2 |
1 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
3 |
4 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
5 |
7 |
| TF |
PA1520 |
|
Xanthine utilization; Allantoin utilization |
3 |
5 |
| TF |
PFL_0254 |
|
Sugar utilization |
1 |
1 |
| TF |
PSPTO0485 |
|
Sugar utilization |
1 |
1 |
| TF |
PSPTO1352 |
|
|
1 |
1 |
| TF |
PSPTO5027 |
|
|
4 |
3 |
| TF |
PdxW2 |
Pyridoxal-5-phosphate |
Pyridoxine biosynthesis |
1 |
1 |
| TF |
PhhR |
Tyrosine; Phenylalanine |
Aromatic amino acid metabolism |
2 |
4 |
| TF |
PhnF |
|
Phosphonate utilization |
1 |
1 |
| TF |
PhnR |
|
Phosphonate utilization; 2-aminoethylphosphonate utilization |
3 |
4 |
| TF |
PhrR |
Blue light; Adenosylcobalamin |
Light-dependent DNA repair |
8 |
6 |
| TF |
PrpR |
2-methylcitrate |
Methylcitrate utilization |
3 |
2 |
| TF |
PsrA |
Oleate |
Fatty acid degradation |
9 |
8 |
| TF |
RbsR |
Ribose |
Ribose utilization |
1 |
1 |
| TF |
RutR |
Uracil |
Pyrimidine utilization |
5 |
4 |
| TF |
RutR3 |
Uracil |
Pyrimidine utilization |
2 |
2 |
| TF |
RutR4 |
Uracil |
Pyrimidine utilization |
2 |
2 |
| TF |
SahR |
S-adenosylhomocysteine |
Methionine metabolism |
1 |
1 |
| TF |
ScrR |
Sucrose |
Sucrose utilization |
2 |
2 |
| TF |
SdaR |
D-glycerate |
Glycerate utilization |
2 |
1 |
| TF |
SdaR |
|
Glucarate utilization; Galactarate utilization |
3 |
3 |
| TF |
UreR |
|
|
2 |
6 |
| TF |
VanR |
Vanillate |
Vanillate utilization |
1 |
2 |
| TF |
YjiR |
|
|
1 |
1 |
| TF |
Zur |
Zinc ion, (Zn2+) |
Zinc homeostasis |
11 |
6 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
8 |
4 |
| RNA |
FMN |
Flavin mononucleotide |
Riboflavin biosynthesis |
2 |
1 |
| RNA |
S15 |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
SAH_riboswitch |
S-adenosylhomocysteine |
Methionine metabolism |
1 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
1 |
1 |
| RNA |
mini-ykkC |
|
Multidrug resistance |
1 |
1 |
| RNA |
ykkC-yxkD |
|
Multidrug resistance |
1 |
1 |
| RNA |
yybP-ykoY |
|
|
2 |
2 |
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