Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Pseudomonas syringae pv. tomato str. DC3000

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF BirA Biotin Biotin biosynthesis 2 2
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 2 1
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF DesT Unsaturated acyl-CoA; Unsaturated acyl-ACP Fatty acid biosynthesis 1 1
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Fructose utilization 2 2
TF GcvR Glycine Glycine metabolism 1 3
TF GguR Glucuronate utilization; Glucarate utilization; Galacturonate utilization; Galactarate utilization 6 5
TF GntR Gluconate Gluconate utilization 3 5
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 4 6
TF HexR1 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 4 3
TF HmgR Homogentisate Tyrosine degradation 3 3
TF HpxS Allantoin utilization 1 1
TF HutC cis-Urocanic acid Histidine utilization 3 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 2
TF LexA DNA damage SOS response 18 12
TF LexA2 DNA damage SOS response 1 1
TF LiuR Branched-chain amino acid degradation 2 2
TF MetR Homocysteine Methionine biosynthesis 4 3
TF ModE Molybdate Molybdenum homeostasis 2 1
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 3 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 5 7
TF PA1520 Xanthine utilization; Allantoin utilization 3 5
TF PFL_0254 Sugar utilization 1 1
TF PSPTO0485 Sugar utilization 1 1
TF PSPTO1352 1 1
TF PSPTO5027 4 3
TF PdxW2 Pyridoxal-5-phosphate Pyridoxine biosynthesis 1 1
TF PhhR Tyrosine; Phenylalanine Aromatic amino acid metabolism 2 4
TF PhnF Phosphonate utilization 1 1
TF PhnR Phosphonate utilization; 2-aminoethylphosphonate utilization 3 4
TF PhrR Blue light; Adenosylcobalamin Light-dependent DNA repair 8 6
TF PrpR 2-methylcitrate Methylcitrate utilization 3 2
TF PsrA Oleate Fatty acid degradation 9 8
TF RbsR Ribose Ribose utilization 1 1
TF RutR Uracil Pyrimidine utilization 5 4
TF RutR3 Uracil Pyrimidine utilization 2 2
TF RutR4 Uracil Pyrimidine utilization 2 2
TF SahR S-adenosylhomocysteine Methionine metabolism 1 1
TF ScrR Sucrose Sucrose utilization 2 2
TF SdaR D-glycerate Glycerate utilization 2 1
TF SdaR Glucarate utilization; Galactarate utilization 3 3
TF UreR 2 6
TF VanR Vanillate Vanillate utilization 1 2
TF YjiR 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 11 6
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 8 4
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 1
RNA S15 Ribosome biogenesis 1 1
RNA SAH_riboswitch S-adenosylhomocysteine Methionine metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 1 1
RNA ykkC-yxkD Multidrug resistance 1 1
RNA yybP-ykoY 2 2
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise