Regulon of SdaR in Pseudomonas syringae pv. tomato str. DC3000
| Regulator type: | Transcription factor |
| TF locus tag: | PSPTOA0035 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucarate utilization; Galactarate utilization |
| Effector: | |
| Regulog: | SdaR - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 5 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/Others
- By pathway - Glucarate utilization
- By pathway - Galactarate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -36
Score: 5.5 Sequence: ATGTTGTCAGACAACCT
Locus tag: PSPTO_B0042
Name: COG579 Funciton: 2-hydroxyglutarate dehydrogenase
Locus tag: PSPTO_B0043
Name: sdaP Funciton: Predicted glucarate/galactarate transporter, MFS superfamily |
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COG579
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2-hydroxyglutarate dehydrogenase
|
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sdaP
|
Predicted glucarate/galactarate transporter, MFS superfamily
|
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Position: -37
Score: 5.9 Sequence: AGGTTGTCAGACAACCT
Locus tag: PSPTOA0036
Name: COG579 Funciton: 2-hydroxyglutarate dehydrogenase
Locus tag: PSPTOA0037
Name: sdaP Funciton: Predicted glucarate/galactarate transporter, MFS superfamily |
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COG579
|
2-hydroxyglutarate dehydrogenase
|
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sdaP
|
Predicted glucarate/galactarate transporter, MFS superfamily
|
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|
Position: -29
Score: 4.3 Sequence: TGATTGTCTGACAACAG
Locus tag: PSPTOA0035
Name: sdaR Funciton: Predicted regulator of D-glucarate/D-galactarate utilization, GntR family |
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sdaR
|
Predicted regulator of D-glucarate/D-galactarate utilization, GntR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |