Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SdaR - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucarate utilization; Galactarate utilization
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP 1 1
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48 3 2
Pseudomonas fluorescens Pf-5 3 2
Pseudomonas mendocina ymp
Pseudomonas putida KT2440
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000 5 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG579
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -58
score = 5.15012
sequence = AATTAGTCTGACAACCT

Gene: PSEEN1736: 2-hydroxyglutarate dehydrogenase
*
Pseudomonas fluorescens Pf-5

Site:
position = -61
score = 5.20196
sequence = AGTTAGTCTGACAACCT

Gene: PFL_2432: 2-hydroxyglutarate dehydrogenase
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
*2
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -36
score = 5.54773
sequence = ATGTTGTCAGACAACCT

Gene: PSPTO_B0042: 2-hydroxyglutarate dehydrogenase

Site:
position = -37
score = 5.87708
sequence = AGGTTGTCAGACAACCT

Gene: PSPTOA0036: 2-hydroxyglutarate dehydrogenase
2-hydroxyglutarate dehydrogenase
sdaP
 
Azotobacter vinelandii AvOP

Gene: Avin_26820: Predicted glucarate/galactarate transporter, MFS superfamily
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN1735: Predicted glucarate/galactarate transporter, MFS superfamily
 
Pseudomonas fluorescens Pf-5

Gene: PFL_2431: Predicted glucarate/galactarate transporter, MFS superfamily
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 2
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTOA0037: Predicted glucarate/galactarate transporter, MFS superfamily

Gene: PSPTO_B0043: Predicted glucarate/galactarate transporter, MFS superfamily
Predicted glucarate/galactarate transporter, MFS superfamily
 
CRON 2.
sdaR
*
Azotobacter vinelandii AvOP

Site:
position = -31
score = 4.75762
sequence = ATAATGTCAGACAACCT

Gene: Avin_26860: Predicted regulator of D-glucarate/D-galactarate utilization, GntR family
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -39
score = 4.83574
sequence = GCATTGTCTGACAACCT

Gene: PSEEN1737: Predicted regulator of D-glucarate/D-galactarate utilization, GntR family
*
Pseudomonas fluorescens Pf-5

Site:
position = -40
score = 4.93082
sequence = CTATTGTCTGACAACCT

Gene: PFL_2433: Predicted regulator of D-glucarate/D-galactarate utilization, GntR family
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -29
score = 4.31962
sequence = TGATTGTCTGACAACAG

Gene: PSPTOA0035: Predicted regulator of D-glucarate/D-galactarate utilization, GntR family
Predicted regulator of D-glucarate/D-galactarate utilization, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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