Regulon of PsrA in Pseudomonas syringae pv. tomato str. DC3000
| Regulator type: | Transcription factor |
| TF locus tag: | PSPTO3508 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Regulog: | PsrA - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PsrA
- By taxonomy - Pseudomonadaceae
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -68
Score: 4.8 Sequence: TTTCAAACAAACGTTTTGAC
Locus tag: PSPTO2192
Name: null Funciton: Proteinase inhibitor |
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Proteinase inhibitor
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Position: -180
Score: 5.7 Sequence: AATCAAACGGGCGTATGAAA
Locus tag: PSPTO3517
Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: PSPTO3516
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
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fadB
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Enoyl-CoA hydratase (EC 4.2.1.17)
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fadA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16)
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Position: -113
Score: 5.6 Sequence: TTTCAAACACCTGTTTGACC
Locus tag: PSPTO0500
Name: acdH1 Funciton: probable acyl-CoA dehydrogenase |
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acdH1
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probable acyl-CoA dehydrogenase
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Position: -373
Score: 5.6 Sequence: ATACAAACGTTTGTTTGAAT
Locus tag: PSPTO2185
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: PSPTO2186
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein, alpha subunit
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Position: -31
Score: 5.6 Sequence: TTTCAAACGTTCGTTTGTTA
Locus tag: PSPTO3508
Name: psrA Funciton: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
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psrA
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Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
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Position: -89
Score: 5.8 Sequence: TTTCAAACGAGCGTATGTTT
Locus tag: PSPTO2726
Name: null Funciton: Phosphoglycerate mutase family protein
Locus tag: PSPTO2725
Name: scp Funciton: Sterol-binding domain protein |
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Phosphoglycerate mutase family protein
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scp
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Sterol-binding domain protein
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Position: -180
Score: 5.3 Sequence: TATTAAACGCTTGTATGAAC
Locus tag: PSPTO0134
Name: algQ Funciton: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ |
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algQ
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Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
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Position: -427
Score: 4.8 Sequence: CCTCAAACGGCAGTTTGAAT
Locus tag: PSPTO1565
Name: rpoS Funciton: RNA polymerase sigma factor RpoS |
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rpoS
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RNA polymerase sigma factor RpoS
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |