Regulon of HexR in Pseudomonas syringae pv. tomato str. DC3000
| Regulator type: | Transcription factor |
| TF locus tag: | PSPTO1299 |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 2-keto-3-deoxy-6-phosphogluconate |
| Regulog: | HexR - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - HexR
- By taxonomy - Pseudomonadaceae
- By TF family - RpiR
- By effector - 2-keto-3-deoxy-6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -154
Score: 7.8 Sequence: ATGTAGT-(7)-ACAACAT
Locus tag: PSPTO1299
Name: hexR Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
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hexR
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Central carbohydrate metabolism transcription regulator HexR, RpiR family
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Position: -201
Score: 7.5 Sequence: TTGTTGT-(7)-ACAAGAT
Position: -140
Score: 6.9 Sequence: ATtTTGT-(7)-ACAACta
Locus tag: PSPTO1288
Name: edd Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
Locus tag: PSPTO1289
Name: glk Funciton: Glucokinase (EC 2.7.1.2)
Locus tag: PSPTO1290
Name: gltR Funciton: DNA-binding response regulator GltR, controls specific porins for the entry of glucose
Locus tag: PSPTO1291
Name: gltS Funciton: Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster |
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edd
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Phosphogluconate dehydratase (EC 4.2.1.12)
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glk
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Glucokinase (EC 2.7.1.2)
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gltR
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DNA-binding response regulator GltR, controls specific porins for the entry of glucose
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gltS
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Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster
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Position: -85
Score: 7.8 Sequence: ATGTTGT-(7)-ACTACAT
Locus tag: PSPTO1300
Name: zwf Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: PSPTO1301
Name: pgl Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: PSPTO1302
Name: eda Funciton: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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zwf
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Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
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pgl
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6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
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eda
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4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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Position: -98
Score: 6.3 Sequence: TTGTAGA-(4)-ACAAAAT
Position: -39
Score: 7.5 Sequence: ATCTTGT-(7)-ACAACAA
Locus tag: PSPTO1287
Name: gapA Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
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gapA
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NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |