Regulog HexR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 2-keto-3-deoxy-6-phosphogluconate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - HexR
- By taxonomy - Pseudomonadaceae
- By TF family - RpiR
- By effector - 2-keto-3-deoxy-6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | 12 | 5 |
| Pseudomonas aeruginosa PAO1 | 9 | 4 |
| Pseudomonas entomophila L48 | 9 | 4 |
| Pseudomonas fluorescens Pf-5 | 9 | 4 |
| Pseudomonas mendocina ymp | 9 | 5 |
| Pseudomonas putida KT2440 | 9 | 4 |
| Pseudomonas stutzeri A1501 | 12 | 4 |
| Pseudomonas syringae pv. tomato str. DC3000 | 9 | 4 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| zwf |
*3
Azotobacter vinelandii AvOP Site: position = -84 score = 6.94492 sequence = TTGTTTT-(4)-ACAACAT Gene: Avin_17630: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Site: position = -84 score = 5.52106 sequence = ATGTaGT-(6)-ACgcaAT Gene: Avin_27260: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Gene: Avin_16620: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Pseudomonas aeruginosa PAO1 Site: position = -81 score = 7.76461 sequence = ATGTTGT-(6)-ACTACAT Gene: PA3183: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Pseudomonas entomophila L48 Site: position = -85 score = 7.76461 sequence = ATGTTGT-(7)-ACTACAT Gene: PSEEN4405: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Pseudomonas fluorescens Pf-5 Site: position = -85 score = 7.76461 sequence = ATGTTGT-(7)-ACTACAT Gene: PFL_4610: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Pseudomonas mendocina ymp Site: position = -85 score = 8.10947 sequence = ATGTTGT-(7)-ACAACAT Gene: Pmen_3143: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Pseudomonas putida KT2440 Site: position = -85 score = 7.76461 sequence = ATGTTGT-(7)-ACTACAT Gene: PP1022: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*2
Pseudomonas stutzeri A1501 Site: position = -85 score = 7.76461 sequence = ATGTTGT-(7)-ACTACAT Gene: PST_3497: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Gene: PST_2329: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -85 score = 7.76461 sequence = ATGTTGT-(7)-ACTACAT Gene: PSPTO1300: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) |
| eda |
3
Azotobacter vinelandii AvOP Gene: Avin_27250: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) Gene: Avin_15720: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) Gene: Avin_27250: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: PA3181: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: PSEEN4403: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: PFL_4608: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Pmen_3141: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: PP1024: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
2
Pseudomonas stutzeri A1501 Gene: PST_3495: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) Gene: PST_2327: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: PSPTO1302: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
| pykA |
Gene: Avin_27240: Pyruvate kinase |
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Pyruvate kinase |
| Avin_45750 |
Gene: Avin_27230: hypothetical protein |
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hypothetical protein |
| eno |
Gene: Avin_27220: Enolase |
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Enolase |
| gapN |
2
Azotobacter vinelandii AvOP Gene: Avin_27210: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.9) Gene: Avin_45780: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.9) |
Gene: PA2323: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.9) |
Gene: PSEEN2956: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.9) |
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Gene: PP3443: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.9) |
Gene: PST_3494: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.9) |
|
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.9) |
| pgl |
*2
Azotobacter vinelandii AvOP Gene: Avin_17640: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Site: position = -127 score = 7.03484 sequence = TCGTAGT-(6)-ACAACAT Gene: Avin_15710: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: PA3182: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: PSEEN4404: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: PFL_4609: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: Pmen_3142: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: PP1023: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
2
Pseudomonas stutzeri A1501 Gene: PST_2328: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Gene: PST_3496: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
Gene: PSPTO1301: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type |
| PST_3493 |
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Gene: PST_3493: Aldo/keto reductase |
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Aldo/keto reductase |
| CRON 2. | |||||||||
| hexR |
*2
Azotobacter vinelandii AvOP Site: position = -66 score = 7.03484 sequence = ATGTTGT-(6)-ACtACga Gene: Avin_15700: Central carbohydrate metabolism transcription regulator HexR, RpiR family Site: position = -111 score = 5.52106 sequence = ATtgcGT-(6)-ACtACAT Gene: Avin_27270: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas aeruginosa PAO1 Site: position = -125 score = 7.76461 sequence = ATGTAGT-(6)-ACAACAT Gene: PA3184: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas entomophila L48 Site: position = -138 score = 7.76461 sequence = ATGTAGT-(7)-ACAACAT Gene: PSEEN4406: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas fluorescens Pf-5 Site: position = -239 score = 7.76461 sequence = ATGTAGT-(7)-ACAACAT Gene: PFL_4611: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas mendocina ymp Site: position = -138 score = 8.10947 sequence = ATGTTGT-(7)-ACAACAT Gene: Pmen_3144: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas putida KT2440 Site: position = -138 score = 7.76461 sequence = ATGTAGT-(7)-ACAACAT Gene: PP_1021: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas stutzeri A1501 Site: position = -178 score = 7.76461 sequence = ATGTAGT-(7)-ACAACAT Gene: PST_3498: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -154 score = 7.76461 sequence = ATGTAGT-(7)-ACAACAT Gene: PSPTO1299: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Central carbohydrate metabolism transcription regulator HexR, RpiR family |
| CRON 3. | |||||||||
| edd |
2
Azotobacter vinelandii AvOP Gene: Avin_15680: Phosphogluconate dehydratase (EC 4.2.1.12) Gene: Avin_27280: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Pseudomonas aeruginosa PAO1 Site: position = -43 score = 7.91839 sequence = ATGTTGT-(4)-ACAACAA Gene: PA3194: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Pseudomonas entomophila L48 Site: position = -141 score = 7.03565 sequence = ATTTTGT-(8)-ACAACGA Site: position = -204 score = 7.51083 sequence = TTGTTGT-(7)-ACAAGAT Gene: PSEEN4417: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Pseudomonas fluorescens Pf-5 Site: position = -138 score = 7.03565 sequence = ATtTTGT-(7)-ACAACga Site: position = -201 score = 7.51083 sequence = TTGTTGT-(7)-ACAAGAT Gene: PFL_4622: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Pseudomonas mendocina ymp Site: position = -50 score = 6.46186 sequence = ATtTTGT-(7)-ACAAaca Site: position = -111 score = 7.51083 sequence = TTGTTGT-(7)-ACAAGAT Gene: Pmen_1312: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Pseudomonas putida KT2440 Site: position = -142 score = 7.03565 sequence = ATtTTGT-(8)-ACAACga Site: position = -203 score = 7.51083 sequence = TTGTTGT-(7)-ACAAGAT Gene: PP1010: Phosphogluconate dehydratase (EC 4.2.1.12) |
*2
Pseudomonas stutzeri A1501 Site: position = -38 score = 6.80592 sequence = tgGTTGT-(6)-ACAAaAT Gene: PST_2444: Phosphogluconate dehydratase (EC 4.2.1.12) Site: position = -31 score = 6.58015 sequence = TTGTTAT-(4)-ACTACAA Gene: PST_3500: Phosphogluconate dehydratase (EC 4.2.1.12) |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -140 score = 6.90724 sequence = ATtTTGT-(7)-ACAACta Site: position = -201 score = 7.51083 sequence = TTGTTGT-(7)-ACAAGAT Gene: PSPTO1288: Phosphogluconate dehydratase (EC 4.2.1.12) |
Phosphogluconate dehydratase (EC 4.2.1.12) |
| glk |
2
Azotobacter vinelandii AvOP Gene: Avin_04130: Glucokinase (EC 2.7.1.2) Gene: Avin_15690: Glucokinase (EC 2.7.1.2) |
Gene: PA3193: Glucokinase (EC 2.7.1.2) |
Gene: PSEEN4416: Glucokinase (EC 2.7.1.2) |
Gene: PFL_4621: Glucokinase (EC 2.7.1.2) |
*
Pseudomonas mendocina ymp Site: position = -193 score = 7.72731 sequence = TTGTTGT-(8)-ACAACAA Gene: Pmen_1147: Glucokinase (EC 2.7.1.2) |
Gene: PP1011: Glucokinase (EC 2.7.1.2) |
2
Pseudomonas stutzeri A1501 Gene: PST_2443: Glucokinase (EC 2.7.1.2) Gene: PST_3499: Glucokinase (EC 2.7.1.2) |
Gene: PSPTO1289: Glucokinase (EC 2.7.1.2) |
Glucokinase (EC 2.7.1.2) |
| gltR |
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Gene: PA3192: DNA-binding response regulator GltR, controls specific porins for the entry of glucose |
Gene: PSEEN4415: DNA-binding response regulator GltR, controls specific porins for the entry of glucose |
Gene: PFL_4620: DNA-binding response regulator GltR, controls specific porins for the entry of glucose |
Gene: Pmen_1148: DNA-binding response regulator GltR, controls specific porins for the entry of glucose |
Gene: PP1012: DNA-binding response regulator GltR, controls specific porins for the entry of glucose |
Gene: PST_2442: DNA-binding response regulator GltR, controls specific porins for the entry of glucose |
Gene: PSPTO1290: DNA-binding response regulator GltR, controls specific porins for the entry of glucose |
DNA-binding response regulator GltR, controls specific porins for the entry of glucose |
| gltS |
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Gene: PA3191: Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster |
Gene: PSEEN4414: Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster |
Gene: PFL_4619: Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster |
Gene: Pmen_1149: Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster |
Gene: PP1013: Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster |
Gene: PST_2441: Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster |
Gene: PSPTO1291: Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster |
Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster |
| CRON 4. | |||||||||
| gapA |
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*
Pseudomonas aeruginosa PAO1 Site: position = -104 score = 7.91839 sequence = TTGTTGT-(4)-ACAACAT Gene: PA3195: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Pseudomonas entomophila L48 Site: position = -146 score = 7.03565 sequence = TCGTTGT-(8)-ACAAAAT Site: position = -83 score = 7.51083 sequence = ATCTTGT-(7)-ACAACAA Gene: PSEEN4418: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Pseudomonas fluorescens Pf-5 Site: position = -105 score = 7.03565 sequence = TCGTTGT-(7)-ACAAAAT Site: position = -43 score = 7.51083 sequence = ATCTTGT-(7)-ACAACAA Gene: PFL_4623: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Pseudomonas mendocina ymp Site: position = -97 score = 6.256 sequence = TTGTATT-(4)-ACAAAAT Site: position = -38 score = 7.51083 sequence = ATCTTGT-(7)-ACAACAA Gene: Pmen_1311: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Pseudomonas putida KT2440 Site: position = -145 score = 7.03565 sequence = TCGTTGT-(8)-ACAAAAT Site: position = -82 score = 7.51083 sequence = ATCTTGT-(7)-ACAACAA Gene: PP1009: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
|
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -98 score = 6.25077 sequence = TTGTAGA-(4)-ACAAAAT Site: position = -39 score = 7.51083 sequence = ATCTTGT-(7)-ACAACAA Gene: PSPTO1287: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |