Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PhrR in Pseudomonas syringae pv. tomato str. DC3000

Properties
Regulator type: Transcription factor
TF locus tag: PSPTO1122
Regulator family: MerR
Regulation mode: repressor
Biological process: Light-dependent DNA repair
Effector: Blue light; Adenosylcobalamin
Regulog: PhrR - Pseudomonadaceae
Statistics of regulated genes:
- Genes 19
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 43 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -71
Score: 5.4
Sequence: TATACCAAACAAGAAGATTGTACA
Locus tag: PSPTO1126
Name: COG3380
Funciton: Predicted NAD/FAD-dependent oxidoreductase
Locus tag: PSPTO1125
Name: PF09493
Funciton: Tryptophan-rich protein (DUF2389)
PSPTO1126
COG3380
Predicted NAD/FAD-dependent oxidoreductase
PSPTO1125
PF09493
Tryptophan-rich protein (DUF2389)
Position: -240
Score: 5.5
Sequence: TGTACAATCTTCTTGTTTGGTATA
Locus tag: PSPTO1127
Name: COG1090
Funciton: Predicted nucleoside-diphosphate sugar epimerase
Locus tag: PSPTO1128
Name: hemH
Funciton: Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)
PSPTO1127
COG1090
Predicted nucleoside-diphosphate sugar epimerase
PSPTO1128
hemH
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)
Position: -101
Score: 6.1
Sequence: TGTACAAAAAAATTCTCTGGTATA
Locus tag: PSPTO1183
Name: folM
Funciton: FolM Alternative dihydrofolate reductase 1
Locus tag: PSPTO1182
Name: folE
Funciton: GTP cyclohydrolase I (EC 3.5.4.16) type 1
Locus tag: PSPTO1181
Name: folB
Funciton: Dihydroneopterin triphosphate epimerase
Locus tag: PSPTO1180
Name: PF06844
Funciton: protein of unknown function DUF1244
Locus tag: PSPTO1179
Name: PF08888
Funciton: HopJ type III effector protein
PSPTO1183
folM
FolM Alternative dihydrofolate reductase 1
PSPTO1182
folE
GTP cyclohydrolase I (EC 3.5.4.16) type 1
PSPTO1181
folB
Dihydroneopterin triphosphate epimerase
PSPTO1180
PF06844
protein of unknown function DUF1244
PSPTO1179
PF08888
HopJ type III effector protein
Position: -47
Score: 6
Sequence: TGTACAAAAATTTACATTGGTACA
Locus tag: PSPTO3689
Name: phrB
Funciton: DNA photolyase PhrB
PSPTO3689
phrB
DNA photolyase PhrB
Position: -101
Score: 6.1
Sequence: TCTACAAAGAATTTGACTTGTACA
Position: -51
Score: 4.9
Sequence: TGTACAGCACAGTTAATCTGTACA
Locus tag: PSPTO1123
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: PSPTO1122
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: PSPTO1121
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: PSPTO1120
Name: PF07366
Funciton: Protein of unknown function DUF1486
Locus tag: PSPTO1119
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: PSPTO1118
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: PSPTO1117
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: PSPTO1116
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: PSPTO1115
Name: PF11086
Funciton: Protein of unknown function DUF2878
PSPTO1123
COG3272
COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
PSPTO1122
phrR
Transcriptional regulator, MerR family, associated with photolyase
PSPTO1121
phr
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
PSPTO1120
PF07366
Protein of unknown function DUF1486
PSPTO1119
PF00106
Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
PSPTO1118
PF01593
Flavin containing amine oxidoreductase
PSPTO1117
PF07103
Protein of unknown function DUF1365
PSPTO1116
PF02353
S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
PSPTO1115
PF11086
Protein of unknown function DUF2878
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