Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Paenibacillus sp. JDR-2

Type Regulator Effector Pathway Genes Sites
TF AraR Arabinose Arabinose utilization 3 4
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 2 3
TF BirA Biotin Biotin biosynthesis 2 2
TF CcpA HPr, phosphocarrier protein Carbon catabolism 19 22
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 9 16
TF CsoR Copper ion, (Cu+) Copper resistance 2 3
TF CtsR Heat shock Heat shock response 1 1
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 9 10
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 1 1
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 2 2
TF FapR Malonyl-CoA Fatty acid biosynthesis 3 4
TF Fnr Oxygen Anaerobic metabolism 1 3
TF Fur Iron ion, (Fe2+) Iron homeostasis 7 17
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 2 3
TF GltC2 Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF GltR unknown 3 3
TF HisR Histidine Histidine biosynthesis 1 1
TF HrcA Heat shock Heat shock response 3 3
TF HxlR Formaldehyde Ribulose monophosphate pathway 1 1
TF IolR1 Inositol utilization 1 1
TF LexA DNA damage SOS response 11 20
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF MhqR 2-Methylhydroquinone and catechol resistance 4 4
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 1 1
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 1 1
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 2
TF OhrR tert-Butyl hydroperoxide; Diamide; Cumene hydroperoxide; Hydrogen peroxide Peroxide stress response 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 6 11
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 2 2
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 4 6
TF RhgR Rhamnogalacturonides utilization 1 2
TF RmgR Rhamnogalacturonides utilization 1 2
TF SdpR SdpI, signal transduction protein Toxin-antitoxin system 1 1
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 26 58
TF UxuR Aldotetraouronic acid Glucuronate utilization 1 2
TF XylR Xylose Xylose utilization 2 4
TF YdfD/YisV Metabolite transport 1 1
TF YfmP Metal efflux 2 2
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YodB/CatR Diamide; Quinone Oxidative stress response 4 5
TF YtcD 2 2
TF YtlI L-cystine transporter 1 2
TF YvcP YvcQ, sensor histidine kinase Bacitracin resistance 1 1
TF YvfU YvfT, sensor histidine kinase Metabolite transport 1 1
TF YwbI Cell wall metabolism 1 1
TF YwrC Metal homeostasis 1 1
TF YybA Polyamine homeostasis 2 2
TF YybR/YdeP Multidrug resistance 2 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 2 4