Propagation of LexA regulog to Paenibacillus sp. JDR-2

Reference regulog properties
Source regulog:	LexA - Bacillales
Regulator type:	Transcription factor
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Phylum:	Firmicutes
Propagated regulon:
Target genome	Paenibacillus sp. JDR-2
Orthologous TF(s)	Pjdr2_2621
Regulated genes	11

Built upon 206 sites [see more]

Predicted regulatory interactions in *Paenibacillus sp. JDR-2*
	Locus tag	Position	Score	Sequence
Position: -42 Score: 4.8 Sequence: TCGAACGTTTGTTCGC Locus tag: Pjdr2_1533
	Pjdr2_1533	-42	4.8	TCGAACGTTTGTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjD
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168	BSU10470	-35	4.3	TAGAACAAACGTTCCC
Bacillus amyloliquefaciens FZB42	RBAM_010690	-40	4.7	AAGAACAAAGGTTCTC
Paenibacillus sp. JDR-2	Pjdr2_1533	-42	4.8	TCGAACGTTTGTTCGC

Position: -90 Score: 5.1 Sequence: CAGAACATACGTTTGT Locus tag: Pjdr2_2219
	Pjdr2_2219	-90	5.1	CAGAACATACGTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: addB
Ortholog function: ATP-dependent deoxyribonuclease (subunit B)
Bacillus pumilus SAFR-032	BPUM_0993	-115	4.2	TCGAAGAGAGGTTCGT
Anoxybacillus flavithermus WK1	Aflv_2231	-174	4.3	GCGAACAAATGATCGA
		34	4.3	TAAAACATATGCTTGA
Geobacillus kaustophilus HTA426	GK0681	-55	4.1	GCGAACATACGTGCTA
Bacillus cereus ATCC 14579	BC1137	-40	4.5	GCAAACTAACGTTCGT
Oceanobacillus iheyensis HTE831	OB1181	-166	4.7	CAGATCATATGTTCGT
Paenibacillus sp. JDR-2	Pjdr2_2219	-90	5.1	CAGAACATACGTTTGT

Position: -172 Score: 4 Sequence: GCGAATTTATGTTATT Locus tag: Pjdr2_2492
	Pjdr2_2492	-172	4	GCGAATTTATGTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Bacillus subtilis subsp. subtilis str. 168	BSU18090	-220	4.9	ACAAACATACGTTCTC
Bacillus amyloliquefaciens FZB42	RBAM_017900	-243	4.3	GCGAACTCATGTTCTT
Bacillus pumilus SAFR-032	BPUM_1709	-246	4.8	TAGAACATTTGTTCTG
Anoxybacillus flavithermus WK1	Aflv_1444	-30	4.7	AGAAACAAATGTTCTT
Geobacillus kaustophilus HTA426	GK1751	-40	4.1	AGAAACAGGTGTTCTT
Bacillus cereus ATCC 14579	BC3597	-44	4.6	AGAAACATATGTTCTG
Bacillus halodurans C-125	BH2140	-72	4.9	CCGAACATGCGTTTGT
Bacillus clausii KSM-K16	ABC1989	-64	4.5	CAGAACAAACATTCGT
Oceanobacillus iheyensis HTE831	OB1693	-57	4.6	AAGAACAGTTGTTCTA
Paenibacillus sp. JDR-2	Pjdr2_2492	-172	4	GCGAATTTATGTTATT

Position: -118 Score: 5.1 Sequence: ACGAACAAATGTTTGC Position: -72 Score: 5.1 Sequence: AAGAACTTATGTTTGT Locus tag: Pjdr2_2621
	Pjdr2_2621	-118	5.1	ACGAACAAATGTTTGC
		-72	5.1	AAGAACTTATGTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response transcriptional repressor
Bacillus subtilis subsp. subtilis str. 168	BSU17850	-139	4.2	AGGAATGTTTGTTCGC
		-102	4.4	ACGAACAAACGTTTCT
		-73	5.1	TCGAACCTATGTTTGT
Bacillus amyloliquefaciens FZB42	RBAM_017650	-140	4.5	AAGAATGTTTGTTCGC
		-103	4.4	ACGAACAAACGTTTCT
		-73	5.1	TCGAACCTATGTTTGT
Bacillus pumilus SAFR-032	BPUM_1686	-142	4.6	TAGAATGTGTGTTCGT
		-103	4.4	ACGAACAAACGTTTCT
		-73	5.1	TCGAACCTATGTTTGT
Bacillus licheniformis DSM 13	BLi02032	-346	4.1	ATGAATTTGTGTTTGT
		-141	4.2	CAGAATGTTTGTTCGG
		-103	4.6	ACGAACAAATGTTTCT
		-73	5.1	TCGAACCTATGTTTGT
Anoxybacillus flavithermus WK1	Aflv_1506	-110	5.2	TAGAACATTTGTTTGT
		-82	4.8	GAGAACTTTTGTTCGT
		-53	5.2	TCGAACTTATGTTTGT
Geobacillus kaustophilus HTA426	GK1328	-136	4.5	TAGAATGTTTGTTCGC
		-103	4.9	AGGAACATTTGTTTGT
		-74	5.1	TCGAACCTATGTTTGT
Bacillus cereus ATCC 14579	BC3690	-70	5.2	TCGAACTTATGTTTGT
Bacillus halodurans C-125	BH2356	-107	4.7	AAGAACACTTGTTTGT
		-78	4.9	TAGAACTTATGTTTGC
Bacillus clausii KSM-K16	ABC2167	-107	4.6	AGGAACAACTGTTCGT
		-76	4.9	TAGAACTTATGTTTGC
Oceanobacillus iheyensis HTE831	OB1669	-142	4.8	CAGAACAATTGTTCTT
		-107	4.6	CCGAACATATGATCTT
		-78	4.2	TAGAACGAGTGTTTGC
Paenibacillus sp. JDR-2	Pjdr2_2621	-157	4.4	CCGAACGTTTGTTCTG
		-118	5.1	ACGAACAAATGTTTGC
		-72	5.1	AAGAACTTATGTTTGT

Position: -113 Score: 5.1 Sequence: ACAAACATAAGTTCTT Locus tag: Pjdr2_2622
	Pjdr2_2622	-113	5.1	ACAAACATAAGTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_2622
Ortholog function: Peptidoglycan-binding protein
Paenibacillus sp. JDR-2	Pjdr2_2622	-129	4.2	TAGAACCGGAGTTCGT
		-113	5.1	ACAAACATAAGTTCTT
		-97	4.8	AAAAACAAAAGTTCGC
		-67	5	GCAAACATTTGTTCGT
		-28	4.7	CAGAACAAACGTTCGG

Position: -84 Score: 4.9 Sequence: ACGAATGTATGTTCGA Locus tag: Pjdr2_3379
	Pjdr2_3379	-84	4.9	ACGAATGTATGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein A
Bacillus subtilis subsp. subtilis str. 168	BSU16940	-87	4.7	CCGAATATGCGTTCGC
Bacillus amyloliquefaciens FZB42	RBAM_016780	-86	4.7	CCGAATATGCGTTCGC
Bacillus pumilus SAFR-032	BPUM_1598	-88	5.2	TCGAATATGTGTTCGT
Bacillus licheniformis DSM 13	BLi01918	-259	4.3	TCGAATTTCAGTTCGC
		-86	4.8	TCGAATATGCGTTCGC
Anoxybacillus flavithermus WK1	Aflv_1530	34	4.7	ACGAACATCTATTCGT
Geobacillus kaustophilus HTA426	GK1295	-85	4.4	ACGAATGGACGTTCGT
Bacillus cereus ATCC 14579	BC3779	-85	5.1	TCGAATAAATGTTCGA
Bacillus halodurans C-125	BH2383	-343	4	AAAAATTCACGTTTGT
		-121	4.9	GCGAATAAATGTTCGT
Bacillus clausii KSM-K16	ABC2199	-132	5.3	ACGAATAAATGTTCGT
Oceanobacillus iheyensis HTE831	OB1624	-82	4.4	AAGAACATCCATTCGT
Paenibacillus sp. JDR-2	Pjdr2_3379	-297	3.9	GCGAACAATAATTTGT
		-84	4.9	ACGAATGTATGTTCGA

Position: -66 Score: 4.2 Sequence: GCGAACATACATTCGG Position: -37 Score: 4.7 Sequence: ACGAACATACTTTCGC Locus tag: Pjdr2_3737
	Pjdr2_3737	-66	4.2	GCGAACATACATTCGG
		-37	4.7	ACGAACATACTTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqjW
Ortholog function: DNA polymerase IV (EC 2.7.7.7)
Bacillus subtilis subsp. subtilis str. 168	BSU23710	-57	4.7	ACGAACATACTTTCGC
		-29	4.9	GCGAACATAAGTTCTT
Bacillus amyloliquefaciens FZB42	RBAM_021830	-28	4.3	CAGAACAAATGTTCCC
Bacillus pumilus SAFR-032	BPUM_2102	-29	4.9	CAGAACATACGTTCTA
Bacillus halodurans C-125	BH2741	-57	4	ACGAACAAATATTCAC
		-30	5	CAGAACAAATGTTCTT
Bacillus clausii KSM-K16	ABC3826	-85	4.1	CCGAACGTCTATTCGT
Paenibacillus sp. JDR-2	Pjdr2_3737	-66	4.2	GCGAACATACATTCGG
		-37	4.7	ACGAACATACTTTCGC

Position: -70 Score: 4.1 Sequence: GCGAATATATGTACGG Locus tag: Pjdr2_4630
	Pjdr2_4630	-70	4.1	GCGAATATATGTACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbcD
Ortholog function: DNA repair exonuclease subunit D
Bacillus pumilus SAFR-032	BPUM_0995	-115	4.2	TCGAAGAGAGGTTCGT
Anoxybacillus flavithermus WK1	Aflv_2229	-174	4.3	GCGAACAAATGATCGA
		34	4.3	TAAAACATATGCTTGA
Geobacillus kaustophilus HTA426	GK0683	-55	4.1	GCGAACATACGTGCTA

Position: -35 Score: 5.2 Sequence: AAGAACATATGTTCTC Locus tag: Pjdr2_4666
	Pjdr2_4666	-35	5.2	AAGAACATATGTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: vsr
Ortholog function: DNA mismatch endonuclease
Paenibacillus sp. JDR-2	Pjdr2_4666	-35	5.2	AAGAACATATGTTCTC

Position: -329 Score: 4.3 Sequence: CGAAACATGCGTTCGA Locus tag: Pjdr2_4818
	Pjdr2_4818	-329	4.3	CGAAACATGCGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrC
Ortholog function: Excinuclease ABC subunit C
Bacillus subtilis subsp. subtilis str. 168	BSU28490	-59	5	AAAAACAAACGTTCGT
Bacillus amyloliquefaciens FZB42	RBAM_025550	-62	5.2	AAAAACAAATGTTCGT
Bacillus pumilus SAFR-032	BPUM_2506	-62	5.2	TAAAACAAATGTTCGT
Bacillus cereus ATCC 14579	BC4520	-83	4.1	AAGAACGTATGTTGGG
Paenibacillus sp. JDR-2	Pjdr2_4818	-329	4.3	CGAAACATGCGTTCGA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of LexA regulog to Paenibacillus sp. JDR-2

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --