Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Paenibacillus sp. JDR-2

Reference regulog properties
Source regulog: LexA - Bacillales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Paenibacillus sp. JDR-2
Orthologous TF(s) Pjdr2_2621
Regulated genes 11
Built upon 206 sites [see more]
Predicted regulatory interactions in Paenibacillus sp. JDR-2
Locus tag Position Score Sequence
Position: -42
Score: 4.8
Sequence: TCGAACGTTTGTTCGC
Locus tag: Pjdr2_1533
Pjdr2_1533 -42 4.8 TCGAACGTTTGTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjD
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU10470 -35 4.3 TAGAACAAACGTTCCC
Bacillus amyloliquefaciens FZB42 RBAM_010690 -40 4.7 AAGAACAAAGGTTCTC
Paenibacillus sp. JDR-2 Pjdr2_1533 -42 4.8 TCGAACGTTTGTTCGC
Position: -90
Score: 5.1
Sequence: CAGAACATACGTTTGT
Locus tag: Pjdr2_2219
Pjdr2_2219 -90 5.1 CAGAACATACGTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: addB
Ortholog function: ATP-dependent deoxyribonuclease (subunit B)
Bacillus pumilus SAFR-032 BPUM_0993 -115 4.2 TCGAAGAGAGGTTCGT
Anoxybacillus flavithermus WK1 Aflv_2231 -174 4.3 GCGAACAAATGATCGA
34 4.3 TAAAACATATGCTTGA
Geobacillus kaustophilus HTA426 GK0681 -55 4.1 GCGAACATACGTGCTA
Bacillus cereus ATCC 14579 BC1137 -40 4.5 GCAAACTAACGTTCGT
Oceanobacillus iheyensis HTE831 OB1181 -166 4.7 CAGATCATATGTTCGT
Paenibacillus sp. JDR-2 Pjdr2_2219 -90 5.1 CAGAACATACGTTTGT
Position: -172
Score: 4
Sequence: GCGAATTTATGTTATT
Locus tag: Pjdr2_2492
Pjdr2_2492 -172 4 GCGAATTTATGTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU18090 -220 4.9 ACAAACATACGTTCTC
Bacillus amyloliquefaciens FZB42 RBAM_017900 -243 4.3 GCGAACTCATGTTCTT
Bacillus pumilus SAFR-032 BPUM_1709 -246 4.8 TAGAACATTTGTTCTG
Anoxybacillus flavithermus WK1 Aflv_1444 -30 4.7 AGAAACAAATGTTCTT
Geobacillus kaustophilus HTA426 GK1751 -40 4.1 AGAAACAGGTGTTCTT
Bacillus cereus ATCC 14579 BC3597 -44 4.6 AGAAACATATGTTCTG
Bacillus halodurans C-125 BH2140 -72 4.9 CCGAACATGCGTTTGT
Bacillus clausii KSM-K16 ABC1989 -64 4.5 CAGAACAAACATTCGT
Oceanobacillus iheyensis HTE831 OB1693 -57 4.6 AAGAACAGTTGTTCTA
Paenibacillus sp. JDR-2 Pjdr2_2492 -172 4 GCGAATTTATGTTATT
Position: -118
Score: 5.1
Sequence: ACGAACAAATGTTTGC
Position: -72
Score: 5.1
Sequence: AAGAACTTATGTTTGT
Locus tag: Pjdr2_2621
Pjdr2_2621 -118 5.1 ACGAACAAATGTTTGC
-72 5.1 AAGAACTTATGTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response transcriptional repressor
Bacillus subtilis subsp. subtilis str. 168 BSU17850 -139 4.2 AGGAATGTTTGTTCGC
-102 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus amyloliquefaciens FZB42 RBAM_017650 -140 4.5 AAGAATGTTTGTTCGC
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus pumilus SAFR-032 BPUM_1686 -142 4.6 TAGAATGTGTGTTCGT
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus licheniformis DSM 13 BLi02032 -346 4.1 ATGAATTTGTGTTTGT
-141 4.2 CAGAATGTTTGTTCGG
-103 4.6 ACGAACAAATGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Anoxybacillus flavithermus WK1 Aflv_1506 -110 5.2 TAGAACATTTGTTTGT
-82 4.8 GAGAACTTTTGTTCGT
-53 5.2 TCGAACTTATGTTTGT
Geobacillus kaustophilus HTA426 GK1328 -136 4.5 TAGAATGTTTGTTCGC
-103 4.9 AGGAACATTTGTTTGT
-74 5.1 TCGAACCTATGTTTGT
Bacillus cereus ATCC 14579 BC3690 -70 5.2 TCGAACTTATGTTTGT
Bacillus halodurans C-125 BH2356 -107 4.7 AAGAACACTTGTTTGT
-78 4.9 TAGAACTTATGTTTGC
Bacillus clausii KSM-K16 ABC2167 -107 4.6 AGGAACAACTGTTCGT
-76 4.9 TAGAACTTATGTTTGC
Oceanobacillus iheyensis HTE831 OB1669 -142 4.8 CAGAACAATTGTTCTT
-107 4.6 CCGAACATATGATCTT
-78 4.2 TAGAACGAGTGTTTGC
Paenibacillus sp. JDR-2 Pjdr2_2621 -157 4.4 CCGAACGTTTGTTCTG
-118 5.1 ACGAACAAATGTTTGC
-72 5.1 AAGAACTTATGTTTGT
Position: -113
Score: 5.1
Sequence: ACAAACATAAGTTCTT
Locus tag: Pjdr2_2622
Pjdr2_2622 -113 5.1 ACAAACATAAGTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_2622
Ortholog function: Peptidoglycan-binding protein
Paenibacillus sp. JDR-2 Pjdr2_2622 -129 4.2 TAGAACCGGAGTTCGT
-113 5.1 ACAAACATAAGTTCTT
-97 4.8 AAAAACAAAAGTTCGC
-67 5 GCAAACATTTGTTCGT
-28 4.7 CAGAACAAACGTTCGG
Position: -84
Score: 4.9
Sequence: ACGAATGTATGTTCGA
Locus tag: Pjdr2_3379
Pjdr2_3379 -84 4.9 ACGAATGTATGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein A
Bacillus subtilis subsp. subtilis str. 168 BSU16940 -87 4.7 CCGAATATGCGTTCGC
Bacillus amyloliquefaciens FZB42 RBAM_016780 -86 4.7 CCGAATATGCGTTCGC
Bacillus pumilus SAFR-032 BPUM_1598 -88 5.2 TCGAATATGTGTTCGT
Bacillus licheniformis DSM 13 BLi01918 -259 4.3 TCGAATTTCAGTTCGC
-86 4.8 TCGAATATGCGTTCGC
Anoxybacillus flavithermus WK1 Aflv_1530 34 4.7 ACGAACATCTATTCGT
Geobacillus kaustophilus HTA426 GK1295 -85 4.4 ACGAATGGACGTTCGT
Bacillus cereus ATCC 14579 BC3779 -85 5.1 TCGAATAAATGTTCGA
Bacillus halodurans C-125 BH2383 -343 4 AAAAATTCACGTTTGT
-121 4.9 GCGAATAAATGTTCGT
Bacillus clausii KSM-K16 ABC2199 -132 5.3 ACGAATAAATGTTCGT
Oceanobacillus iheyensis HTE831 OB1624 -82 4.4 AAGAACATCCATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3379 -297 3.9 GCGAACAATAATTTGT
-84 4.9 ACGAATGTATGTTCGA
Position: -66
Score: 4.2
Sequence: GCGAACATACATTCGG
Position: -37
Score: 4.7
Sequence: ACGAACATACTTTCGC
Locus tag: Pjdr2_3737
Pjdr2_3737 -66 4.2 GCGAACATACATTCGG
-37 4.7 ACGAACATACTTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqjW
Ortholog function: DNA polymerase IV (EC 2.7.7.7)
Bacillus subtilis subsp. subtilis str. 168 BSU23710 -57 4.7 ACGAACATACTTTCGC
-29 4.9 GCGAACATAAGTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_021830 -28 4.3 CAGAACAAATGTTCCC
Bacillus pumilus SAFR-032 BPUM_2102 -29 4.9 CAGAACATACGTTCTA
Bacillus halodurans C-125 BH2741 -57 4 ACGAACAAATATTCAC
-30 5 CAGAACAAATGTTCTT
Bacillus clausii KSM-K16 ABC3826 -85 4.1 CCGAACGTCTATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3737 -66 4.2 GCGAACATACATTCGG
-37 4.7 ACGAACATACTTTCGC
Position: -70
Score: 4.1
Sequence: GCGAATATATGTACGG
Locus tag: Pjdr2_4630
Pjdr2_4630 -70 4.1 GCGAATATATGTACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbcD
Ortholog function: DNA repair exonuclease subunit D
Bacillus pumilus SAFR-032 BPUM_0995 -115 4.2 TCGAAGAGAGGTTCGT
Anoxybacillus flavithermus WK1 Aflv_2229 -174 4.3 GCGAACAAATGATCGA
34 4.3 TAAAACATATGCTTGA
Geobacillus kaustophilus HTA426 GK0683 -55 4.1 GCGAACATACGTGCTA
Position: -35
Score: 5.2
Sequence: AAGAACATATGTTCTC
Locus tag: Pjdr2_4666
Pjdr2_4666 -35 5.2 AAGAACATATGTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: vsr
Ortholog function: DNA mismatch endonuclease
Paenibacillus sp. JDR-2 Pjdr2_4666 -35 5.2 AAGAACATATGTTCTC
Position: -329
Score: 4.3
Sequence: CGAAACATGCGTTCGA
Locus tag: Pjdr2_4818
Pjdr2_4818 -329 4.3 CGAAACATGCGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrC
Ortholog function: Excinuclease ABC subunit C
Bacillus subtilis subsp. subtilis str. 168 BSU28490 -59 5 AAAAACAAACGTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_025550 -62 5.2 AAAAACAAATGTTCGT
Bacillus pumilus SAFR-032 BPUM_2506 -62 5.2 TAAAACAAATGTTCGT
Bacillus cereus ATCC 14579 BC4520 -83 4.1 AAGAACGTATGTTGGG
Paenibacillus sp. JDR-2 Pjdr2_4818 -329 4.3 CGAAACATGCGTTCGA