Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of AraR regulog to Paenibacillus sp. JDR-2

Reference regulog properties
Source regulog: AraR - Bacillales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Arabinose utilization
Effector: Arabinose
Phylum: Firmicutes
Propagated regulon:
Target genome Paenibacillus sp. JDR-2
Orthologous TF(s) Pjdr2_4208
Regulated genes 3
Built upon 43 sites [see more]
Predicted regulatory interactions in Paenibacillus sp. JDR-2
Locus tag Position Score Sequence
Position: -83
Score: 5.6
Sequence: TAAGTTGTACGTACAACTTA
Locus tag: Pjdr2_2502
Pjdr2_2502 -83 5.6 TAAGTTGTACGTACAACTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araA
Ortholog function: L-arabinose isomerase (EC 5.3.1.4)
Bacillus subtilis subsp. subtilis str. 168 BSU28800 -103 5.9 AAAATTGTTCGTACAAATAT
Bacillus amyloliquefaciens FZB42 RBAM_025860 -99 5.8 AAAATTGTTCGTACAAATAA
-57 5.3 ATATTCGTACGTATATTTTT
Bacillus pumilus SAFR-032 BPUM_2327 -102 6.1 ACATATGTACGTACAAATAT
Bacillus licheniformis DSM 13 BLi02064 -138 5 ATATTTATATGAACATATTA
-106 5.8 ACATATGTACGTACAAAAAA
Bacillus licheniformis DSM 13 BLi03028 -155 5.2 GAAGTTGTTCGTACAAATAT
-125 5.7 TTAGTTGTACGTACATATAA
Anoxybacillus flavithermus WK1 Aflv_0531 -54 5.7 AAAAATGTACGTACAAAATT
Geobacillus kaustophilus HTA426 GK1904 -61 5.6 AAAATTGTACGTACAATAGT
Bacillus halodurans C-125 BH1873 -71 5.7 AAAATTGTACGTACAAGTGT
Oceanobacillus iheyensis HTE831 OB2797 -152 5.9 TAATTTGTACGTATATATAT
-119 5.4 ACAAATGTACGTACAATAAT
Paenibacillus sp. JDR-2 Pjdr2_2502 -83 5.6 TAAGTTGTACGTACAACTTA
Position: -62
Score: 5.3
Sequence: AAACATGTACGTACAAGTGT
Locus tag: Pjdr2_4207
Pjdr2_4207 -62 5.3 AAACATGTACGTACAAGTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araD
Ortholog function: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Bacillus subtilis subsp. subtilis str. 168 BSU28780 -103 5.9 AAAATTGTTCGTACAAATAT
Bacillus amyloliquefaciens FZB42 RBAM_025840 -99 5.8 AAAATTGTTCGTACAAATAA
-57 5.3 ATATTCGTACGTATATTTTT
Bacillus licheniformis DSM 13 BLi03026 -155 5.2 GAAGTTGTTCGTACAAATAT
-125 5.7 TTAGTTGTACGTACATATAA
Anoxybacillus flavithermus WK1 Aflv_0529 -54 5.7 AAAAATGTACGTACAAAATT
Geobacillus kaustophilus HTA426 GK1906 -61 5.6 AAAATTGTACGTACAATAGT
Bacillus halodurans C-125 BH1871 -71 5.7 AAAATTGTACGTACAAGTGT
Paenibacillus sp. JDR-2 Pjdr2_4207 -62 5.3 AAACATGTACGTACAAGTGT
Position: -100
Score: 4.8
Sequence: TCACATGTACATACAAGTTA
Locus tag: Pjdr2_4209
Pjdr2_4209 -100 4.8 TCACATGTACATACAAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araK
Ortholog function: Ribulokinase (EC 2.7.1.16)
Bacillus pumilus SAFR-032 BPUM_2329 -102 6.1 ACATATGTACGTACAAATAT
Bacillus licheniformis DSM 13 BLi02062 -138 5 ATATTTATATGAACATATTA
-106 5.8 ACATATGTACGTACAAAAAA
Oceanobacillus iheyensis HTE831 OB2799 -152 5.9 TAATTTGTACGTATATATAT
-119 5.4 ACAAATGTACGTACAATAAT
Paenibacillus sp. JDR-2 Pjdr2_4209 -100 4.8 TCACATGTACATACAAGTTA
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