Regulog AraR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Arabinose utilization |
| Effector: | Arabinose |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By trascription factor - AraR
- By TF family - GntR/Others
- By effector - Arabinose
- By pathway - Arabinose utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 13 | 5 |
| Bacillus amyloliquefaciens FZB42 | 13 | 5 |
| Bacillus pumilus SAFR-032 | 5 | 2 |
| Bacillus licheniformis DSM 13 | 13 | 3 |
| Anoxybacillus flavithermus WK1 | 6 | 2 |
| Geobacillus kaustophilus HTA426 | 7 | 3 |
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | 12 | 5 |
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | 5 | 2 |
| Paenibacillus sp. JDR-2 | 4 | 3 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| BH1061 |
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Bacillus halodurans C-125 Site: position = -172 score = 5.57692 sequence = TTATTCGTACGAACAAATAA Gene: BH1061: Alpha-glucuronidase (EC 3.2.1.139) |
Gene: ABC0555: Alpha-glucuronidase (EC 3.2.1.139) |
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Gene: Pjdr2_1323: Alpha-glucuronidase (EC 3.2.1.139) |
Alpha-glucuronidase (EC 3.2.1.139) |
| CRON 2. | ||||||||||||
| araA |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -103 score = 5.853 sequence = AAAATTGTTCGTACAAATAT Gene: BSU28800: L-arabinose isomerase (EC 5.3.1.4) |
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Bacillus amyloliquefaciens FZB42 Site: position = -57 score = 5.26869 sequence = ATATTCGTACGTATATTTTT Site: position = -99 score = 5.83127 sequence = AAAATTGTTCGTACAAATAA Gene: RBAM_025860: L-arabinose isomerase (EC 5.3.1.4) |
Gene: BPUM_2327: L-arabinose isomerase (EC 5.3.1.4) |
*2
Bacillus licheniformis DSM 13 Gene: BLi02064: L-arabinose isomerase (EC 5.3.1.4) Site: position = -125 score = 5.71286 sequence = TTAGTTGTACGTACATATAA Site: position = -155 score = 5.15606 sequence = GAAGTTGTTCGTACAAATAT Gene: BLi03028: L-arabinose isomerase (EC 5.3.1.4) |
Gene: Aflv_0531: L-arabinose isomerase (EC 5.3.1.4) |
Gene: GK1904: L-arabinose isomerase (EC 5.3.1.4) |
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Gene: BH1873: L-arabinose isomerase (EC 5.3.1.4) |
Gene: ABC0408: L-arabinose isomerase (EC 5.3.1.4) |
Gene: OB2797: L-arabinose isomerase (EC 5.3.1.4) |
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Paenibacillus sp. JDR-2 Site: position = -83 score = 5.60097 sequence = TAAGTTGTACGTACAACTTA Gene: Pjdr2_2502: L-arabinose isomerase (EC 5.3.1.4) |
L-arabinose isomerase (EC 5.3.1.4) |
| araB |
Gene: BSU28790: Ribulokinase (EC 2.7.1.16) |
Gene: RBAM_025850: Ribulokinase (EC 2.7.1.16) |
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Gene: BLi03027: Ribulokinase (EC 2.7.1.16) |
Gene: Aflv_0530: Ribulokinase (EC 2.7.1.16) |
Gene: GK1905: Ribulokinase (EC 2.7.1.16) |
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Gene: BH1872: Ribulokinase (EC 2.7.1.16) |
Gene: ABC0407: Ribulokinase (EC 2.7.1.16) |
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Ribulokinase (EC 2.7.1.16) |
| araD |
Gene: BSU28780: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: RBAM_025840: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: BPUM_2328: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
2
Bacillus licheniformis DSM 13 Gene: BLi02063: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) Gene: BLi03026: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
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Anoxybacillus flavithermus WK1 Site: position = -54 score = 5.73456 sequence = AAAAATGTACGTACAAAATT Gene: Aflv_0529: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
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Geobacillus kaustophilus HTA426 Site: position = -61 score = 5.63588 sequence = AAAATTGTACGTACAATAGT Gene: GK1906: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
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Bacillus halodurans C-125 Site: position = -71 score = 5.71057 sequence = AAAATTGTACGTACAAGTGT Gene: BH1871: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: ABC0406: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: OB2798: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
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Paenibacillus sp. JDR-2 Site: position = -62 score = 5.30592 sequence = AAACATGTACGTACAAGTGT Gene: Pjdr2_4207: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
| araL |
Gene: BSU28770: L-arabinose utilization protein |
Gene: RBAM_025830: L-arabinose utilization protein |
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Gene: ABC0404: L-arabinose utilization protein |
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L-arabinose utilization protein |
| egsA |
Gene: BSU28760: Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261) |
Gene: RBAM_025820: Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261) |
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Gene: BLi03025: Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261) |
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Gene: BH1862: Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261) |
Gene: ABC0405: Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261) |
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Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261) |
| araN |
Gene: BSU28750: Alpha-arabinosides ABC transport system, substrate-binding protein |
Gene: RBAM_025810: Alpha-arabinosides ABC transport system, substrate-binding protein |
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Gene: BLi03024: Alpha-arabinosides ABC transport system, substrate-binding protein |
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Gene: BH0905: Alpha-arabinosides ABC transport system, substrate-binding protein |
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Alpha-arabinosides ABC transport system, substrate-binding protein |
| araP |
Gene: BSU28740: Alpha-arabinosides ABC transport system, permease protein 1 |
Gene: RBAM_025800: Alpha-arabinosides ABC transport system, permease protein 1 |
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Gene: BLi03023: Alpha-arabinosides ABC transport system, permease protein 1 |
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Bacillus halodurans C-125 Site: position = -49 score = 4.42753 sequence = AAACGTGTACGTACACGATA Gene: BH0902: Alpha-arabinosides ABC transport system, permease protein 1 |
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Alpha-arabinosides ABC transport system, permease protein 1 |
| araQ |
Gene: BSU28730: Alpha-arabinosides ABC transport system, permease protein 2 |
Gene: RBAM_025790: Alpha-arabinosides ABC transport system, permease protein 2 |
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Gene: BLi03022: Alpha-arabinosides ABC transport system, permease protein 2 |
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Gene: BH0903: Alpha-arabinosides ABC transport system, permease protein 2 |
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Alpha-arabinosides ABC transport system, permease protein 2 |
| abfA |
Gene: BSU28720: Alpha-N-arabinofuranosidase (EC 3.2.1.55) |
Gene: RBAM_025780: Alpha-N-arabinofuranosidase (EC 3.2.1.55) |
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Gene: BLi03021: Alpha-N-arabinofuranosidase (EC 3.2.1.55) |
Gene: Aflv_0533: Alpha-N-arabinofuranosidase (EC 3.2.1.55) |
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Bacillus halodurans C-125 Site: position = -198 score = 6.12355 sequence = AAATTTGTACGTACAAAAAA Site: position = -100 score = 5.51212 sequence = TATTATGTACGTACAAGTTA Gene: BH1861: Alpha-N-arabinofuranosidase (EC 3.2.1.55) |
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Alpha-N-arabinofuranosidase (EC 3.2.1.55) |
| abf5 |
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Gene: Aflv_0532: Alpha-L-arabinofuranosidase II precursor |
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Alpha-L-arabinofuranosidase II precursor |
| araK |
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Bacillus pumilus SAFR-032 Site: position = -102 score = 6.06043 sequence = ACATATGTACGTACAAATAT Gene: BPUM_2329: Ribulokinase (EC 2.7.1.16) |
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Bacillus licheniformis DSM 13 Site: position = -138 score = 5.03828 sequence = ATATTTATATGAACATATTA Site: position = -106 score = 5.78504 sequence = ACATATGTACGTACAAAAAA Gene: BLi02062: Ribulokinase (EC 2.7.1.16) |
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Oceanobacillus iheyensis HTE831 Site: position = -152 score = 5.87614 sequence = TAATTTGTACGTATATATAT Site: position = -119 score = 5.38375 sequence = ACAAATGTACGTACAATAAT Gene: OB2799: Ribulokinase (EC 2.7.1.16) |
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Paenibacillus sp. JDR-2 Site: position = -100 score = 4.75903 sequence = TCACATGTACATACAAGTTA Gene: Pjdr2_4209: Ribulokinase (EC 2.7.1.16) |
Ribulokinase (EC 2.7.1.16) |
| araE |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -190 score = 5.26157 sequence = AAATGTATACGGACAAATTT Site: position = -109 score = 6.00642 sequence = ATATTTGTACGTACTAATTA Site: position = -66 score = 5.4564 sequence = ATATAAGTACGTACAATTGA Gene: BSU33960: L-arabinose-proton symporter |
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Bacillus amyloliquefaciens FZB42 Site: position = -152 score = 5.40942 sequence = TTATTTGTGCGTACTAATTT Site: position = -109 score = 5.58152 sequence = TCATAAGTACGTACAAATGT Gene: RBAM_031320: L-arabinose-proton symporter |
Gene: BPUM_2326: L-arabinose-proton symporter |
Gene: BLi02065: L-arabinose-proton symporter |
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Gene: OB2796: L-arabinose-proton symporter |
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L-arabinose-proton symporter |
| xsa |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -173 score = 5.4802 sequence = AAATACATACGTACAAATAT Gene: BSU28510: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) |
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Bacillus amyloliquefaciens FZB42 Site: position = -169 score = 5.56371 sequence = TAATTGGTTCGTACAAATTA Gene: RBAM_025570: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) |
Gene: BPUM_2508: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) |
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Gene: BH1874: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) |
Gene: ABC3371: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) |
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Gene: Pjdr2_5206: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) |
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) |
| yteU |
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Gene: BH0904: Predicted integral membrane protein |
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Predicted integral membrane protein |
| araR |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -48 score = 6.00642 sequence = TAATTAGTACGTACAAATAT Site: position = -91 score = 5.4564 sequence = TCAATTGTACGTACTTATAT Gene: BSU33970: Transcriptional repressor of arabinoside utilization, GntR family |
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Bacillus amyloliquefaciens FZB42 Site: position = -167 score = 5.58152 sequence = ACATTTGTACGTACTTATGA Site: position = -124 score = 5.40942 sequence = AAATTAGTACGCACAAATAA Gene: RBAM_031330: Transcriptional repressor of arabinoside utilization, GntR family |
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Bacillus pumilus SAFR-032 Site: position = -191 score = 6.06043 sequence = ATATTTGTACGTACATATGT Gene: BPUM_2330: Transcriptional repressor of arabinoside utilization, GntR family |
*2
Bacillus licheniformis DSM 13 Site: position = -160 score = 5.03828 sequence = TAATATGTTCATATAAATAT Site: position = -192 score = 5.78504 sequence = TTTTTTGTACGTACATATGT Gene: BLi02061: Transcriptional repressor of arabinoside utilization, GntR family Gene: BLi03256: Transcriptional repressor of arabinoside utilization, GntR family |
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Anoxybacillus flavithermus WK1 Site: position = -81 score = 5.87614 sequence = AAATATATACGTACAAATAA Gene: Aflv_0528: Transcriptional repressor of arabinoside utilization, GntR family |
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Geobacillus kaustophilus HTA426 Site: position = -75 score = 4.96238 sequence = ATAATGATACGGACAAATAA Gene: GK1907: Transcriptional repressor of arabinoside utilization, GntR family |
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Bacillus halodurans C-125 Site: position = -36 score = 5.22018 sequence = TCATTTGTACGTATAAGTTG Gene: BH1875: Transcriptional repressor of arabinoside utilization, GntR family |
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Oceanobacillus iheyensis HTE831 Site: position = -203 score = 5.38375 sequence = ATTATTGTACGTACATTTGT Site: position = -170 score = 5.87614 sequence = ATATATATACGTACAAATTA Site: position = -63 score = 5.27937 sequence = AAATATGTACATACAAGTAT Gene: OB2800: Transcriptional repressor of arabinoside utilization, GntR family |
Gene: Pjdr2_4208: Transcriptional repressor of arabinoside utilization, GntR family |
Transcriptional repressor of arabinoside utilization, GntR family |
| CRON 3. | ||||||||||||
| araF |
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Gene: BLi00442: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
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Geobacillus kaustophilus HTA426 Site: position = -36 score = 5.66463 sequence = TTAAATATACGTACAAATTT Gene: GK1910: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
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Gene: BH3442: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
Gene: ABC0409: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
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Gene: Pjdr2_0661: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
| araG |
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Gene: BLi00443: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
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Gene: GK1909: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
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Gene: BH3441: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
Gene: ABC0410: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
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Gene: Pjdr2_0662: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
| araH |
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Gene: BLi00444: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
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Gene: GK1908: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
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Gene: BH3440: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
Gene: ABC0411: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
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Gene: Pjdr2_0663: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
L-arabinose transport system permease protein (TC 3.A.1.2.2) |
| CRON 4. | ||||||||||||
| abnA |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -159 score = 5.18073 sequence = TTTTTTGTCTGTACAAATTA Gene: BSU28810: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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Bacillus amyloliquefaciens FZB42 Site: position = -105 score = 5.17601 sequence = TTTTTTGTCTGTACAAATAT Gene: RBAM_025870: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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2
Bacillus licheniformis DSM 13 Gene: BLi03029: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) Gene: BLi01295: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |